lat (LOC107567139,LOC107755157)


Basic Information

Item Value
gene id lat
gene name LOC107567139,LOC107755157
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20541330 ~ 20548973 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233995.1
ttgcagTGGCAAGAACGATGATCATAAAGTTTTTCAGTTGCTGTGGTTTCCTGTTTGTAGGTGGGATATAGAGATGCAAGTGTGTTTGGTAAATTTACTGTGAAAATTAGTCTTGTGAATGAATTATGAAAACCGAAGCGCCTGAACCGAAGCACGCATTGTTTTGCAGTGGAACATTTCGGTGGATGATGCTGTGCTTGTGACAATATAATGTACCAGTATGTCATTCCCGTAATTGGTGTTTGTGCAGGTTACAAGAACCCCACAAAATGCCACAAGAGTGGGAGGCAAGATTGAGAAATTATGACTCATTGTCCGCCGTAACGAAGcaacaaattaacatttatagtTCAAACCAGGCAAGGATtttaacagacagacaaacatcCGTGTTCTGtgacactttattaaaaaaatgaccccctattattattattatgactttaAATCTTGCAATGGGGCACCACAAATGTATGATCTGTTGCGGTCAATTTAACATACTGCTTTCTAAAAGGAGGTTTTCCAGAAAATCACGAAATAATGACTTTATCTTCTGGGTCTAACATCtgacaaatgaaaaaattaagaaagaaatGCTATCAAATCTGCATGGAGACAGAAAACTGAACCTTCAGATATAAGATACGAAACAAGAAGGGAGGTGAAATGAGCGAGAGATCAGCCAGTTACAGAGATGAAGAGGGAGAAAAAATGATGCTGACTGGTGGAAGCGACGGAACAGCGCTTTCTGTGAGCCTATGAGGAGGTAGAGAGCAAGAGCAGCGAGGGAAGAAACCTGAAAGTGAAGTTCTTTGCAGCAAAGGCCCTGTAGATCAGGACACACCTCGGCGGGTCATATGAAGTAAAAACATAGGAAAATTAACTTCGGCAGATATGAGCATATTGGGCAACTGACGAATGGGATTGCTTAAGTTTTGGTTGAGAGGTCAACTTAAGGAGAACAATTGAGGAACAAGTAGTGAGGGAGTAAGAGTAAAAAATGGTGGCACCGTCAGTGTGAGCCTTGACATAGGTGTGATTTGTGTAattgcagcgtgtgtgtgtgtgtgtgtgagagagagagctggtCGGCACTTTGGTTGCAGATTTCTGCTGAGAAGAGCGTGTGGTGTCTCGATTGACTTGATAGCTGCTGCTGATACTGTTATGGACTTCACTGCACTGCTGTCTGTGGTAGGCGGGGCTCTCTTCCTGTCAATCATCCTTGCAGCCAGTCTTTGCACATACTGCTGGGGACATAAACAACCAACATCCATCCATCAGAGGTCCAGTGACTCAGAATACAACGCAACATCAGGTTTTGTGGTTCGGCATCCTGTGTCAACATATGAGCACCATACGGATCACGGCAGAATCGGACCCTACCTACCCAATTCGCTCAGTTCACCGTCTATCACCGTCACAAAGGTGCCCTCCTGTCCTCCCTCAGAAACTGGAAGTCAAGCCAGTTATGTGAATCAAAACGGTGAGGAAGGAATCAGCAGTCGTGCCAATGGCCATgAGAGCGACGATGAGCCGTACGTTCAGCCTCCAAGCGAATACatAGTTGTTCTTCCAGACTCGCCAGTCACTCTGTCTCAGAGACCCAGCAGAGCTTCATCCCAGAGCTCAGGAGAACCGTACATAAATGTAGAAAAGGATGAGAATGTGCCCGAAGTTATATTTGACTACGAGATGTATGTGGATGAATCGGACTCAGacattcCAGATtatgaaaattgtaaaaattctCAAGaccaaagaaaacaaacctATAGTCTGTCCTGTGGAAGTCAAAGCAGTGATGAACGGGATAGCTCCGATTATGTCAACACAGACCctaatttacaataattaagGATTTGCCTTTGATGAAATGAGCAAAGTATCATCCGTCTGCCAGGAGTTCAGATTTACCTGTGCCTTACATTTTATAGTGCTTCACCACAGAAGACTTCCCTCAATCCTGACGATACCTgagaatgtttttatatatactttaagtTAACATTTGCTGTTTACTGTGTACTGCATCCAGGCTTTTACTTTCAAATATGATCTTTTCTTCCATGTAATATATAGCTTTTCGACTTAATGAACATGTTAACTATTGGTTTGTAAatggcaaaatacattttacaataaaagttttacaattta
>XM_043233996.1
ttgcagTGGCAAGAACGATGATCATAAAGTTTTTCAGTTGCTGTGGTTTCCTGTTTGTAGGTGGGATATAGAGATGCAAGTGTGTTTGGTAAATTTACTGTGAAAATTAGTCTTGTGAATGAATTATGAAAACCGAAGCGCCTGAACCGAAGCACGCATTGTTTTGCAGTGGAACATTTCGGTGGATGATGCTGTGCTTGTGACAATATAATGTACCAGTATGTCATTCCCGTAATTGGTGTTTGTGCAGGTTACAAGAACCCCACAAAATGCCACAAGAGTGGGAGGCAAGATTGAGAAATTATGACTCATTGTCCGCCGTAACGAAGcaacaaattaacatttatagtTCAAACCAGGCAAGGATtttaacagacagacaaacatcCGTGTTCTGtgacactttattaaaaaaatgaccccctattattattattatgactttaAATCTTGCAATGGGGCACCACAAATGTATGATCTGTTGCGGTCAATTTAACATACTGCTTTCTAAAAGGAGGTTTTCCAGAAAATCACGAAATAATGACTTTATCTTCTGGGTCTAACATCtgacaaatgaaaaaattaagaaagaaatGCTATCAAATCTGCATGGAGACAGAAAACTGAACCTTCAGATATAAGATACGAAACAAGAAGGGAGGTGAAATGAGCGAGAGATCAGCCAGTTACAGAGATGAAGAGGGAGAAAAAATGATGCTGACTGGTGGAAGCGACGGAACAGCGCTTTCTGTGAGCCTATGAGGAGGTAGAGAGCAAGAGCAGCGAGGGAAGAAACCTGAAAGTGAAGTTCTTTGCAGCAAAGGCCCTGTAGATCAGGACACACCTCGGCGGGTCATATGAAGTAAAAACATAGGAAAATTAACTTCGGCAGATATGAGCATATTGGGCAACTGACGAATGGGATTGCTTAAGTTTTGGTTGAGAGGTCAACTTAAGGAGAACAATTGAGGAACAAGTAGTGAGGGAGTAAGAGTAAAAAATGGTGGCACCGTCAGTGTGAGCCTTGACATAGGTGTGATTTGTGTAattgcagcgtgtgtgtgtgtgtgtgtgagagagagagctggtCGGCACTTTGGTTGCAGATTTCTGCTGAGAAGAGCGTGTGGTGTCTCGATTGACTTGATAGCTGCTGCTGATACTGGGGAAGTAACGTGCCATTTAGTGTCAGCTTGGTTGACACGCTACAGTGAAAAAGACGACTTATTCATCTACAATTTCGGTTATGGACTTCACTGCACTGCTGTCTGTGGTAGGCGGGGCTCTCTTCCTGTCAATCATCCTTGCAGCCAGTCTTTGCACATACTGCTGGGGACATAAACAACCAACATCCATCCATCAGAGGTCCAGTGACTCAGAATACAACGCAACATCAGGTTTTGTGGTTCGGCATCCTGTGTCAACATATGAGCACCATACGGATCACGGCAGAATCGGACCCTACCTACCCAATTCGCTCAGTTCACCGTCTATCACCGTCACAAAGGTGCCCTCCTGTCCTCCCTCAGAAACTGGAAGTCAAGCCAGTTATGTGAATCAAAACGGTGAGGAAGGAATCAGCAGTCGTGCCAATGGCCATgAGAGCGACGATGAGCCGTACGTTCAGCCTCCAAGCGAATACatAGTTGTTCTTCCAGACTCGCCAGTCACTCTGTCTCAGAGACCCAGCAGAGCTTCATCCCAGAGCTCAGGAGAACCGTACATAAATGTAGAAAAGGATGAGAATGTGCCCGAAGTTATATTTGACTACGAGATGTATGTGGATGAATCGGACTCAGacattcCAGATtatgaaaattgtaaaaattctCAAGaccaaagaaaacaaacctATAGTCTGTCCTGTGGAAGTCAAAGCAGTGATGAACGGGATAGCTCCGATTATGTCAACACAGACCctaatttacaataattaagGATTTGCCTTTGATGAAATGAGCAAAGTATCATCCGTCTGCCAGGAGTTCAGATTTACCTGTGCCTTACATTTTATAGTGCTTCACCACAGAAGACTTCCCTCAATCCTGACGATACCTgagaatgtttttatatatactttaagtTAACATTTGCTGTTTACTGTGTACTGCATCCAGGCTTTTACTTTCAAATATGATCTTTTCTTCCATGTAATATATAGCTTTTCGACTTAATGAACATGTTAACTATTGGTTTGTAAatggcaaaatacattttacaataaaagttttacaattta
>XM_043233997.1
TCACATTATAATTTCGAAACACATAGTCTATTGTCTATGCAAATCGGCAAACATACCTTTTTGGCATAAACGGTTTATATAGATGTATTGTTTTCTTGCTAATTGACTCTAAATGGTAATATGGCTGTAGTGTGATAAAGATCAGAGGGTCAAAAGGTCTTATTATCACATTCACTGTCCTTCGTCAAGTCAGTTACATCAACATTCATGTAAAATCAGTTGCGGAAAGCACGCGCTGACCATAATTACTCGTcttacaaatcttttttttgtatttaaacgAGTCCTGTcttgttgtaataataaaagtcCACGGTAAATTGCACTATAACACTGATTTGGTTTTCAAAATGTCTCTCATGCTGGTTGCTCAAGGCAGCTTTGATTGTATTTAGTTTAGGTTTTTTCTCAAATTTAGGTAAGGCTGACATTTGCCCTGCTTTTTCGGGGAGCTCTAGGTGGTAGTTTGCTATAACCTGACATCTCTGGAACTAAGAGAGGCCCAGACCATAATATGTcggttttttttctcatctaaCTGCAAAATACAGGAAATCCGTTTCCTGGCACTGAATGCAACCACAGACAGCCACACGTATCACATATATAGAGGAGTGTAAAAGCTTGCAAGGCAGGTGATGCTGAGTGAGTTTTCGCAGATTGAGAATTTGCCTTATTTGTCAGATGTTTCATCTGAAAAGCTCTGACCGCTCCGAAATTGTTGTGTATCCATTAAAATGCACACAGTGATGCAAGTTGAGTTATGGACTTCACTGCACTGCTGTCTGTGGTAGGCGGGGCTCTCTTCCTGTCAATCATCCTTGCAGCCAGTCTTTGCACATACTGCTGGGGACATAAACAACCAACATCCATCCATCAGAGGTCCAGTGACTCAGAATACAACGCAACATCAGGTTTTGTGGTTCGGCATCCTGTGTCAACATATGAGCACCATACGGATCACGGCAGAATCGGACCCTACCTACCCAATTCGCTCAGTTCACCGTCTATCACCGTCACAAAGGTGCCCTCCTGTCCTCCCTCAGAAACTGGAAGTCAAGCCAGTTATGTGAATCAAAACGGTGAGGAAGGAATCAGCAGTCGTGCCAATGGCCATgAGAGCGACGATGAGCCGTACGTTCAGCCTCCAAGCGAATACatAGTTGTTCTTCCAGACTCGCCAGTCACTCTGTCTCAGAGACCCAGCAGAGCTTCATCCCAGAGCTCAGGAGAACCGTACATAAATGTAGAAAAGGATGAGAATGTGCCCGAAGTTATATTTGACTACGAGATGTATGTGGATGAATCGGACTCAGacattcCAGATtatgaaaattgtaaaaattctCAAGaccaaagaaaacaaacctATAGTCTGTCCTGTGGAAGTCAAAGCAGTGATGAACGGGATAGCTCCGATTATGTCAACACAGACCctaatttacaataattaagGATTTGCCTTTGATGAAATGAGCAAAGTATCATCCGTCTGCCAGGAGTTCAGATTTACCTGTGCCTTACATTTTATAGTGCTTCACCACAGAAGACTTCCCTCAATCCTGACGATACCTgagaatgtttttatatatactttaagtTAACATTTGCTGTTTACTGTGTACTGCATCCAGGCTTTTACTTTCAAATATGATCTTTTCTTCCATGTAATATATAGCTTTTCGACTTAATGAACATGTTAACTATTGGTTTGTAAatggcaaaatacattttacaataaaagttttacaattta
>XM_043233998.1
ttgcagTGGCAAGAACGATGATCATAAAGTTTTTCAGTTGCTGTGGTTTCCTGTTTGTAGGTGGGATATAGAGATGCAAGTGTGTTTGGTAAATTTACTGTGAAAATTAGTCTTGTGAATGAATTATGAAAACCGAAGCGCCTGAACCGAAGCACGCATTGTTTTGCAGTGGAACATTTCGGTGGATGATGCTGTGCTTGTGACAATATAATGTACCAGTATGTCATTCCCGTAATTGGTGTTTGTGCAGGTTACAAGAACCCCACAAAATGCCACAAGAGTGGGAGGCAAGATTGAGAAATTATGACTCATTGTCCGCCGTAACGAAGcaacaaattaacatttatagtTCAAACCAGGCAAGGATtttaacagacagacaaacatcCGTGTTCTGtgacactttattaaaaaaatgaccccctattattattattatgactttaAATCTTGCAATGGGGCACCACAAATGTATGATCTGTTGCGGTCAATTTAACATACTGCTTTCTAAAAGGAGGTTTTCCAGAAAATCACGAAATAATGACTTTATCTTCTGGGTCTAACATCtgacaaatgaaaaaattaagaaagaaatGCTATCAAATCTGCATGGAGACAGAAAACTGAACCTTCAGATATAAGATACGAAACAAGAAGGGAGGTGAAATGAGCGAGAGATCAGCCAGTTACAGAGATGAAGAGGGAGAAAAAATGATGCTGACTGGTGGAAGCGACGGAACAGCGCTTTCTGTGAGCCTATGAGGAGGTAGAGAGCAAGAGCAGCGAGGGAAGAAACCTGAAAGTGAAGTTCTTTGCAGCAAAGGCCCTGTAGATCAGGACACACCTCGGCGGGTCATATGAAGTAAAAACATAGGAAAATTAACTTCGGCAGATATGAGCATATTGGGCAACTGACGAATGGGATTGCTTAAGTTTTGGTTGAGAGGTCAACTTAAGGAGAACAATTGAGGAACAAGTAGTGAGGGAGTAAGAGTAAAAAATGGTGGCACCGTCAGTGTGAGCCTTGACATAGGTGTGATTTGTGTAattgcagcgtgtgtgtgtgtgtgtgtgagagagagagctggtCGGCACTTTGGTTGCAGATTTCTGCTGAGAAGAGCGTGTGGTGTCTCGATTGACTTGATAGCTGCTGCTGATACTGTTATGGACTTCACTGCACTGCTGTCTGTGGTAGGCGGGGCTCTCTTCCTGTCAATCATCCTTGCAGCCAGTCTTTGCACATACTGCTGGGGACATAAACAACCAACATCCATCCATCAGAGGTCCAGTGACTCAGAATACAACGCAACATCAGGTTTTGTGGTTCGGCATCCTGTGTCAACATATGAGCACCATACGGATCACGGCAGAATCGGACCCTACCTACCCAATTCGCTCAGTTCACCGTCTATCACCGTCACAAAGGTGCCCTCCTGTCCTCCCTCAGAAACTGGAAGTCAAGCCAGTTATGTGAATCAAAACGAGAGCGACGATGAGCCGTACGTTCAGCCTCCAAGCGAATACatAGTTGTTCTTCCAGACTCGCCAGTCACTCTGTCTCAGAGACCCAGCAGAGCTTCATCCCAGAGCTCAGGAGAACCGTACATAAATGTAGAAAAGGATGAGAATGTGCCCGAAGTTATATTTGACTACGAGATGTATGTGGATGAATCGGACTCAGacattcCAGATtatgaaaattgtaaaaattctCAAGaccaaagaaaacaaacctATAGTCTGTCCTGTGGAAGTCAAAGCAGTGATGAACGGGATAGCTCCGATTATGTCAACACAGACCctaatttacaataattaagGATTTGCCTTTGATGAAATGAGCAAAGTATCATCCGTCTGCCAGGAGTTCAGATTTACCTGTGCCTTACATTTTATAGTGCTTCACCACAGAAGACTTCCCTCAATCCTGACGATACCTgagaatgtttttatatatactttaagtTAACATTTGCTGTTTACTGTGTACTGCATCCAGGCTTTTACTTTCAAATATGATCTTTTCTTCCATGTAATATATAGCTTTTCGACTTAATGAACATGTTAACTATTGGTTTGTAAatggcaaaatacattttacaataaaagttttacaattta

Function

NR:

description
uncharacterized protein LOC110521887 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233995.1 False 2160 mRNA 0.42 13 20541330 20548973
XM_043233996.1 True 2239 mRNA 0.42 14 20541330 20548973
XM_043233997.1 False 1756 mRNA 0.41 13 20542781 20548973
XM_043233998.1 False 2124 mRNA 0.42 13 20541330 20548973

Neighbor

gene id symbol gene type direction distance location
LOC122341343 spns1,LOC107552478,LOC107754623,LOC107689070,LOC107739389,LOC107660866,LOC107567150 coding upstream 142 20528051 ~ 20541188 (+)
sgf29 sgf29 coding upstream 14698 20522868 ~ 20526632 (+)
LOC122342097 LOC107660919,LOC107567207,LOC107754572,LOC107689067,LOC107552480,LOC107735422,LOC107739406 coding upstream 58593 20478686 ~ 20482737 (+)
si:dkey-93n13.2 LOC107754579,LOC107567217,LOC107661267,LOC107689100,LOC107739413,LOC107552446 coding upstream 64097 20474185 ~ 20477233 (+)
LOC122341263 LOC107689064 coding upstream 67919 20470981 ~ 20473411 (+)
LOC122341935 LOC107687002 coding downstream 25300 20574273 ~ 20577034 (+)
pitpnbl pitpnbl,LOC107754658,LOC107739385,LOC107552474,LOC107567088,LOC107689074,LOC107660806,LOC108410611,LOC103031125 coding downstream 28807 20577780 ~ 20584896 (+)
sez6l2 LOC107660756,LOC107567075,LOC107754673,LOC107739383,LOC107689077 coding downstream 54641 20603614 ~ 20616947 (+)
kctd13 kctd13,LOC107739382,LOC107660789,LOC107552471,LOC107755045,LOC107567055 coding downstream 68293 20617266 ~ 20622534 (+)
hirip3 LOC107552470,LOC107689078,LOC107739380 coding downstream 73740 20622713 ~ 20627117 (+)
G21687 NA non-coding upstream 23292 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 133003 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 147429 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 195974 20339891 ~ 20345356 (+)
LOC122337901 NA non-coding downstream 171600 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 174485 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 189004 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 221684 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 222151 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 345609 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 427832 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 472077 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1138154 19399408 ~ 19403176 (+)
G21213 NA other upstream 1248989 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 333225 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 746729 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1088770 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1426279 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1427536 21976509 ~ 22025911 (+)

Expression


Co-expression Network