gper1 (LOC107703333,LOC107710646,LOC107579847,LOC107719188,LOC107565760,LOC107674622)


Basic Information

Item Value
gene id gper1
gene name LOC107703333,LOC107710646,LOC107579847,LOC107719188,LOC107565760,LOC107674622
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17679275 ~ 17685695 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234014.1
CTGAGGAAAgtcagagcagagagagagagcgagagagagagagaaagagagaggaggaggaggaggaggtagAGGGGTGGCTAGTGAACTAGTGGCCACAAAGAAAGGAAGCTGTAGTGATATTCCTGTCTGGACCTTCTCCCTGACAGCAGCGAGTTGTCTTGTAACAGTAGGTGGCGCAGACAGTGGATCTTGTCCCGGTAAAGGAATTACACATCTGCTGCAACTTTACACTGACTGCATCACAAGCCCTTGTGAATAAAGTGTCACAGTGGTAGTGTCATTGGtggactaaataaaaaaatcatgctcaTGGACTGGAGGAGACCAGATTGCACTGCATTGAACGCATTTGAAGAGCAAagtgtgcaaaagaaaaaaagaaagctcagTCCCTAAGGAGACTTTTGGTATTGGTGCCATGGATCACACAAGCCCAGGCAGCCTCCATAGCTGAGAGACCGCCCTGAAAATGGAGGTCCTCTACCCTGGCTGCATCTCCAGAGGTGAATCTGTCTGGGTGGAATCTATCAAACCTTGAGCGTTCGCTTGTAAACAACCGTCAGAATGCGAATGGAGGCTCAATGAAGGATGCTCTCTACAAGGCGAACTAGGCTCTGACACAAATGAAGTATGTAGCACCATTCACAGCATCTGAAACAGAGACTTGGCCAGTATGGAAGTGCAGACTACCACTGTGATTCAGATTTATGTAAATGGCACTGAGCGGTTCAATGCTTCGTATGACTTCAACCTAACAGATGTGAAAGAAAGCGTAGACACCTATGAGTTTTACATCATCGGCTTGTTTCTCTCCTGCCTGTACACCATATTCCTGTTCCCCATTGGCTTCATTGGGAACATCCTCATTTTGGTGGTCAACCTCAACCACAGGGACAAGATGACCATCCCTGATCTGTACTTCGTCAACCTGGCTGTGGCGGACCTTATTCTGGTGGCAGACTCGCTCATCGAGGTCTTCAATCTCAACGAGAAGTACTATGACTATGCCGTCCTCTGTACTTTCATGTCGCTGTTCCTCCAGGTGAACATGTACAGCAGCATCTTCTTCCTAACGTGGATGAGTTTCGACCGATACATTGCTCTGGCTAGCTCTATGAGCAGCAGTCCGCTGCGCACCATGCAGCACGCCAAACTCAGTTGCAGCCTCATCTGGATGGCCTCCATCCTGGCGACTCTGCTTCCTTTCACTATCGTGCAGACCCAACACACCGGCGAGGTGCACTTCTGCTTCGCCAACGTCTTTGAGATCCAGTGGCTCGAGGTGACGATCGGATTCCTGGTGCCCTTCTCCATCATCGGCCTGTGCTATTCCCTGATCGTCCGCATCCTCATGCGTGCCCAGAAGCACAGAGGACTGTGGCCGCGCCGACAGAAGGCCCTGCGCATGATCGTGGTGGTGGTGCTAGTGTTCTTTATTTGCTGGCTGCCTGAGAATGTCTTCATTAGCATCCAGCTGCTCCAAGGCACGGCCGACCCGTCGAAACGCAGCGACACCACGTTGTGGCACGACTACCCCTTGACCGGACACATTGTCAACCTTGCTGCGTTCTCCAATAGCTGCCTCAACCCGATCATTTACAGCTTCCTTGGGGAGACTTTCAGAGACAAGCTGCGGCTCTTCATTAAGAGGAAAGCCAGCTGGTCTGTGGTCTACCGCTTCTGTAATCACACCCTGGATTTGCACATCCCTGTCAGGAGCGAGTCCGAAGTGTAGGGCAGGTGTGGCAACCTGCAGTCCCTGAAGTTGTCTCGCTTCCAGAACTTGATCGTGAattgacagagagagagagagagagatccttGGGTTAACGATGCCGTGAACGCTGCCAAGTTCTTATTGTTGGCTGAGCGAAACAAGGATTATCCAGGGTGAATCACCTGCTGATGACGTGGATTATAAAACACAGATGCAGAGCTTGGTCTAAGGCGGCCTTTTACAGATAATCGAAATAATAGGATAGCAATGATGACTTTTATAGGATGATATTCTCAGAGTCCATTTTAAGGGAACAAATAAAGTCATGGAAGCACCTGCGACCCGTCACTGCTATATATTCTCCAGTTTATATATGAATGTTATTGAAACTTGATCTGTTCTGTTTTAAGacttaataaatgcacatttttgtagGATTTTTTCATTGCAAACATCTTCACTGAGAGGGGATGCAAAAAACGTGAGAGTCCCCtgtcgaaaaaaaaacaaacaaaaaaaaaacacagtaggCAGGTtgggtatgttttgaagcatggcagcCGGTTTGAGcaggtttaagctggtccttacTTGGTCATGAgctgccatgcttcaaaacatacctaaccagcatatgctgttttctttgtttcaacAGGGTCTTGTGTAAGATTCACTCCCAGCCAATTTTAGAGATTCTGTAAGCAGTACTAATGTCTCAGAATGTAAACTTCATGTGCTGCCTCTCTAGGTTTACACAAAAACATCATTAGGGAAACATTAAAGTAAATTCAGTTCAATGCAAA

Function

NR:

description
PREDICTED: G-protein coupled estrogen receptor 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:1900194 negative regulation of oocyte maturation biological_process
GO:2000179 positive regulation of neural precursor cell proliferation biological_process
GO:0051447 negative regulation of meiotic cell cycle biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0071392 cellular response to estradiol stimulus biological_process
GO:0043950 positive regulation of cAMP-mediated signaling biological_process
GO:0040019 positive regulation of embryonic development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0032591 dendritic spine membrane cellular_component
GO:0005769 early endosome cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030424 axon cellular_component
GO:0055037 recycling endosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0030054 cell junction cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005496 steroid binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K04246 GPER1, GPR30; G-protein coupled estrogen receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234014.1 True 2526 mRNA 0.48 2 17679275 17685695

Neighbor

gene id symbol gene type direction distance location
gpr146 LOC107565765,LOC107710650,LOC107674685,LOC107703371,LOC107550312,LOC107719180 coding upstream 10583 17658434 ~ 17668692 (+)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767,LOC107749910 coding upstream 57054 17578740 ~ 17622221 (+)
ube2ia ube2i,ube2ia,LOC105013396 coding upstream 108824 17566263 ~ 17570451 (+)
hs3st2 hs3st2,LOC107741797,LOC107550309,LOC107574133,LOC107703334,LOC107674621,LOC108433116 coding upstream 229783 17423288 ~ 17449492 (+)
LOC122332748 NA coding upstream 295090 17381783 ~ 17384185 (+)
unkl unkl,LOC107550311,LOC107674636,LOC107565763,LOC107710649,LOC107703366,LOC106601098 coding downstream 6211 17691906 ~ 17715622 (+)
tyk2 tyk2,LOC107703360,LOC107587917,LOC107674650,LOC107596804 coding downstream 246010 17931705 ~ 17954332 (+)
raver1 raver1,LOC107703359,LOC107587918,LOC107674651,LOC107596810,LOC107754048 coding downstream 269154 17954849 ~ 17970674 (+)
pde4a pde4a,LOC107596808,LOC107674699,LOC107703358,LOC108443456,LOC108257440,LOC106958375 coding downstream 294527 17980222 ~ 18026132 (+)
dnase1 dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635 coding downstream 347017 18032712 ~ 18035362 (+)
G20953 NA non-coding upstream 27974 17650767 ~ 17651301 (+)
G20927 NA non-coding upstream 106802 17572130 ~ 17572473 (+)
G20915 LOC107550314,LOC107703374,LOC107719177,LOC107565769,LOC107741796 non-coding upstream 115911 17553374 ~ 17563364 (+)
G20908 usp31,LOC107703377,LOC107550315,LOC107674671 non-coding upstream 162846 17503896 ~ 17516429 (+)
G20803 NA non-coding upstream 570581 17107992 ~ 17108694 (+)
G20951 h3f3b,H3F3A,LOC105909691,LOC101073377,LOC107388308,LOC102790198,LOC107572204,LOC106578873 non-coding downstream 3720 17689415 ~ 17690288 (+)
G20994 NA non-coding downstream 176372 17862067 ~ 17863081 (+)
G21045 NA non-coding downstream 294472 17980167 ~ 18067318 (+)
G21049 NA non-coding downstream 349844 18035539 ~ 18042621 (+)
G21050 NA non-coding downstream 352866 18038561 ~ 18041682 (+)
LOC122341316 NA other upstream 478645 17137930 ~ 17200630 (+)
nsmce1 nsmce1 other upstream 562234 17113048 ~ 17117041 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other upstream 894464 16770545 ~ 16784811 (+)
LOC122331507 psmg3,LOC107703392 other upstream 979793 16690703 ~ 16699482 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other upstream 1471429 16179620 ~ 16207846 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 33487 17719182 ~ 17723423 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other downstream 184482 17870177 ~ 17901491 (+)
polr3k polr3k,LOC107703329 other downstream 218889 17904584 ~ 17906643 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other downstream 235222 17920917 ~ 17929634 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other downstream 388380 18074075 ~ 18075616 (+)

Expression


Co-expression Network