G17353


Basic Information

Item Value
gene id G17353
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9216022 ~ 9228859 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU19478
ATGTGGATTTGCAGCTGGTGGGGTCATCAGGACGCGTCTCAAAGCCATCGACACAGAGGCAGTGGAAGCTGCCGTGTGTGTTGATGCAACGCTGAGCACAGGGATATGTGGTGGTGCACTCATCCACATCCACACACGTCTTTCCATCTTGCTTCAGACGGAAACCTGGATGACACCGGCACTTAAAGCCGATCTTGAGATCTTCACAGAGCTGTGAGCAGCCGCTCAGCTTACTGTTGAGACATTCATTGATGAAGCAGTTGTGTTCATCAGAGCCGTCACCACACTCATCGTTACCATCACACAGCAATGTCTCGTTCACACACTTGCCATTGGCACACAGGAAGGAAGTGTCATTACAGCGCCTCTCTGGGTCTGTGCAAAGTGGGTTTTTGGGAGCTTCGTCTGATTGGTCCCTACAGTCAAACTCTCCGTCACACTCCCAGCTCTTCTGCTTCAAACACTGGCCATTAGCACAGCGGAAATCGTTCGGCCCACACGTGGGATATTCACACTCGGGCGACTCGTCAGAGCCATCGCGGCAGTCAACGTCATGATCACACATGAAGTTTTTGGGAATACACTGATAATTCTGACATTGGAATTCAGAGTCATCACAGGTCTTATTGAACGCACAGCCCGCCTTGATGCCCTCATCTGCACCATCAGGACAGTCCTTATCCCCGTCACACTTCCAACGCTGAGAAATACACATGTGGGAGCCGGGACATTGGAATGCTTCTGGACTGCAAGTCTTTGTCTTGCATTTGCTGTCCTCATCAGTGCCGTCTCCACAGTCATCAGTGCCGTCACACACCCAGGATTTGGAGATACAACGATGGTTTCCACACTCAAACTGATTTGATGCACAGAACTTATCACAGTGAGACTCATCTGCTCCATTCTCACAGTCATTCTCTTTGTCACAGGTCCAGCTCATGGGAATACAACGGCCGCTCGGACACGCAAAGAAGTTCACTGTACATTTCTGCTTCCTTTTCTCCGGACAGTTTCTTTCATCTGAGAAGTCTCCGCAGTCATTGGAGCCATCACAGCGCCAGGAGGGGGCGTAGCAGAGTGTAGTGAACTCACACCTCTCGAAGGTCATGCCCTTCACTCCAAGCAGATAGTAACTAGAGCAGTCAGTGGGGCTGCAGTTCATCTCATCACTGGCGTCCTCACAGTCCGCCACCTGATTACAGCGACTAGAGTTAGTGATGCAGGAACCGTCTTTGCACTGGAACTCAGCAGCGCTGCACAGAGTCATGTTGCACGGCAGCTCGTCTGAACCATCTCCACAGTCATCAGTGCCGTCGCACCAGGAGCTGTGTTTGATACAGCGTCCGTTAATGCAGCGCCGGTAGCCCTTCTTACACATGCGGTTCACACAGTAGGACTGCTTCTCATCAGACTTGTCTTTGCAGTGGGCCTGACTGTCACAGGTAAAGCTGTAGTCGATACAGTCACCGTTTCCACACTCAAACTCATCCACGCTGTTACAGGTTGTGTTCTCCGCAACACAAGTGTTGTCTCCCAGTAGTTTGCGCTCTCCACGGCAGCTACAGTTGACTCGTCCCTCTGACGTGAGCAGACACAGGTCCTGACAGCCTCCGTTATTGGTGAGGCATGGAGAAAACTCACAGCTATTGGTGTCTTTGGCCACAGCGATGATGCCCATTGGCTGTTGAGGAATGTCAGCACGTAGGACTTTCATATCTCTGCCGTATTTATCAGCTCTGAGAACAGCTCTGCGCACCCAGTCTGTCCAGAAGATATATTCACCATACACAGCCAAACCGAAAGGATGCACTGGCTCGTTCTTTAGGACCACAAAGCGCCGGCTGCCATCATACTCGCAGCGCTCAATCTTGTCAAATGTGGCGTCAGAGAAATAGAGTTTCTCAGCACGGTGGTCGATGGCCAGTCCGTTCGGGGTGCGGATGTTATTTCCGATGATAACAAGGACGTTAGCTCCAGAAAGAGATGCTCGCATGATACTGGGAGACTGTTCATTCCAGTTAGTCCAGAACATCAGGTCTTGACATTCATCCAGAACAAAGGCTCTGGGGTGGTCGTCCCCGGACATAGTGACCACGGTGTCTCTATCAAAAGCTCCAGTGCGACTCTGGTCCACAGTGTGCCGTGTAATGGTGGAGGTGGTATAGCTGGTCCAGTAAAGTGTGTCCCAACCACGGTGATAAGCCAAACCTTCAACTGACCCTACATTCTCTACTATGGTCTTGCGGTCAGAGCCGTCATCGCTGATCTGCTGAATGTTACCGAAGTGGATGTCGCTGTAGAAGATCCGGTTGGCTCCCTTTCCACCACCGCCTCTGTAGTCGAAGGTAAGGGCGATTACGTTCTTCATGTGCTCTGGGTCTTCGAAGGGTTTAATGGGAGCATTGAGGTTTGTTTCATCCGACAGGTGGATGCTCTTCAGTATCGTGCGCTCCGAGTAGAGGAGGTAGCCATCATAGTCCCTGCAACTGTGGCCATCTTCTGCCAGCATGCCGTGTGCGCAGGCACAGGTACGATTGCCATTACCACGGAACAGACACAGCTGTTCACAACCACCATTGTTCACCTTACAGACGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU19478 True 2595 TUCP 0.51 16 9216022 9228859

Neighbor

gene id symbol gene type direction distance location
CI01000001_09186450_09203866 FMNL3 coding upstream 12156 9186333 ~ 9203866 (+)
CI01000001_09164619_09166621 NA coding upstream 49297 9164541 ~ 9166725 (+)
CI01000001_09147684_09162673 ESYT1A coding upstream 52807 9147684 ~ 9163215 (+)
CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A coding upstream 70503 9132867 ~ 9145555 (+)
CI01000001_09113045_09130978 NA coding upstream 84700 9113045 ~ 9131322 (+)
CI01000001_09267532_09267951 NA coding downstream 38603 9267462 ~ 9268132 (+)
CI01000001_09285920_09289361 NA coding downstream 56929 9285788 ~ 9289441 (+)
CI01000001_09308544_09311741 NA coding downstream 77842 9306701 ~ 9312011 (+)
CI01000001_09334528_09350703 RBMS2B coding downstream 105669 9334528 ~ 9351363 (+)
CI01000001_09383903_09384322 NA coding downstream 155044 9383899 ~ 9384678 (+)
G17507 NA non-coding upstream 72188 9143361 ~ 9143834 (+)
G17388 NA non-coding upstream 124637 9088542 ~ 9091385 (+)
G17385 NA non-coding upstream 187071 9028681 ~ 9028951 (+)
G17359 NA non-coding upstream 187503 9028111 ~ 9028519 (+)
G17566 NA non-coding downstream 152276 9381135 ~ 9381660 (+)
G17581 NA non-coding downstream 244752 9473611 ~ 9473929 (+)
G17583 NA non-coding downstream 245721 9474580 ~ 9474783 (+)
G17234 NA other upstream 1183539 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1675436 7531541 ~ 7540586 (+)
G15995 NA other upstream 3501071 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3926066 5279837 ~ 5287698 (+)
G15794 NA other upstream 4151318 5061218 ~ 5064704 (+)
G17354 NA other downstream 5604 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 189469 9435836 ~ 9436373 (+)
G18896 NA other downstream 1011041 10239900 ~ 10241492 (+)
G18873 NA other downstream 1028253 10223879 ~ 10260714 (+)
G18872 NA other downstream 1042287 10271146 ~ 10281369 (+)

Expression


Co-expression Network