rnf25 (rnf25,LOC107729499,LOC107658504,LOC107582997,LOC107689710,LOC107554089)


Basic Information

Item Value
gene id rnf25
gene name rnf25,LOC107729499,LOC107658504,LOC107582997,LOC107689710,LOC107554089
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12168881 ~ 12173874 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234036.1
attcatatttacagTCATCTCTGTGTCACCTGACCGATGTCGTGGACGGGTGACGTCACTGCGAACATGGCTGCCGAGAGCGATGTCCTGTCGGAAATTGAAGTGCTGCAGTCCATCTACTTGGATGAGCTTGGTGTTGAACAGAGAGACGGAGGAGGATGGACAATCAGTCTGGTGCTCTATCCCTCCACAGCGGAGGACTGTCTGTCCCAGTTTGTCCGTCTTACATTGACAATGGATCTAGACTCTCAGTACCCATATTCATCCCCTTGTATCTCTATTCACAATCCACGTGGACTCTCGGATGATAAGCTGCTCAGtttacAGAGTAGTTTGCAGATGGAAGCAGAGTCGTGTATCGGGACAGCTGTACTGTATCAGCTCATAGAGAGAGCCAAAGAGATTCTGACTGAGAGCAATATTCCCCATGGAAACTGTGTCATCTGTCTGTATGGATTTAAGGAAGGGGAAGTGTTCACGAAGACCAGCTGCTATCACTATTTCCATTCTCACTGTCTTGGCCGCTATATCACTCACTCTGAGATGGAGCTGAAGGACCGTGAGAGGGAGCTGGAGGAGGATAAAACCAGAGACGGGACCGAAGAAGAGGGATTATTTGTTGGTTGCCCCGTGTGTCGAGAGCCTCTCACCTATGATTTGGATGCCCTCCTTTCCTCTCCAGCTCCAGTTTTCACACAGCAGGACGATGCAGTCATCGGTGGggaatttaaaaagaaatgggcAGCACTCCAGAAGGTTCTGGAACGGCAGAAGGAAAAGGGTGGAGTTATTGACCCCGAAGCAGAGTCCAATAGATTCCTCATTCACATTAATGAGGCTTCAGCTAATGTTTCTGACACTCCTTCAACGGATGCCTCTGGTTCCGAATCTACTCAGTCACTCCCCTCCTCGTCCCAAGATCCCACTGATGTAACCCAAGTCTCTCAAAGTCATCACACTACAGGCCAATCACAGCGCTTGTGCACTCATGAAAGAAGGCCACAAGGTGACTTTAAGAGAGGTCgtagaggaagaggaggaggtggaAGGGGGGGGTCAGCTCGTCACATGATACCTACACCTGGGGTAGAACGGTTGGGCAAGCTCACGCATTCTTCTGATGAGATTAATCATGTGAACTCAGGCCCACCGAACACCACACCACAGGGAGAAAGTACAGCACAAGGACAAGAATGTGAACTCAGTGATAATATAACACAGCTCAGGCAGCCTATGAccaatgaagaagaaaaaacagtttCTCAAGAGAAGGTTACATCAGAATCCAACTGTGGACAAAATGTGAGCCAACAAAAAGTGTGTATTTCAAAAGATGTGACACAGACAATCTTACACGAAGGACACCCAGAGAGGGAACATGTGGTTAGAGGATGGAAGCGTGGCGGTCGTGGCTCTGGACGACATCATGGACACTGGCAGGAGAGGAACTTCAAGGGACCCAGTCACTGGGATACTTCTGGAAGCATTGGCCACCGTGGAGGAGGACACAGAGCCAGAGAGGGAGGGGCTGGGCATCATCACAGAGGGGGCGGGGCTCATAGAGGTGGTGGGAGGGGATTGCATCAGAGAGTGGAAAAAGAATTTAGGAAAGAGGGAGTACTCTGACAGTGGGAGAGGGGAGGAGCAGGCATAGAAACAAGCATACCTCCCAGTTTTACCAGCTGTACCGTCATTATGTCAGTGTCTGTAATAAAATTCTCCGCAAGCAGTAAA
>XM_043234043.1
ATTGTTGATGTATAATGAGGACATGAATATGCaaagaatagtttttttatgtattattgttttttattgactaatattcatgttttttttattcgttGACAATTAGATAattgttttgcaaatgtttgtttgtggatGTAATActatgtaaaaattttaatattcacaACATACTCAAACCTTTTGCTTTGgtgtgtattttaaagtatttggtgtgttgttttttttttttttttttaagtattttaaagtgtagGCTACTACACCTCTGACTTCGTTCAAAATACAAACAGATAATACACAGATCTGTGCGTtccccaaaaataaacataaataaatccCTCTTGGCGAGATTTTATGTGTGCATcgaaaaattaattcatatttacagTCATCTCTGTGTCACCTGACCGATGTCGTGGACGGGTGACGTCACTGCGAACATGGCTGCCGAGAGCGATGTCCTGTCGGAAATTGAAGTGCTGCAGTCCATCTACTTGGATGAGCTTGGTGTTGAACAGAGAGACGGAGGAGGATGGACAATCAGTCTGGTGCTCTATCCCTCCACAGCGGAGGACTGTCTGTCCCAGTTTGTCCGTCTTACATTGACAATGGATCTAGACTCTCAGTACCCATATTCATCCCCTTGTATCTCTATTCACAATCCACGTGGACTCTCGGATGATAAGCTGCTCAGtttacAGAGTAGTTTGCAGATGGAAGCAGAGTCGTGTATCGGGACAGCTGTACTGTATCAGCTCATAGAGAGAGCCAAAGAGATTCTGACTGAGAGCAATATTCCCCATGGAAACTGTGTCATCTGTCTGTATGGATTTAAGGAAGGGGAAGTGTTCACGAAGACCAGCTGCTATCACTATTTCCATTCTCACTGTCTTGGCCGCTATATCACTCACTCTGAGATGGAGCTGAAGGACCGTGAGAGGGAGCTGGAGGAGGATAAAACCAGAGACGGGACCGAAGAAGAGGGATTATTTGTTGGTTGCCCCGTGTGTCGAGAGCCTCTCACCTATGATTTGGATGCCCTCCTTTCCTCTCCAGCTCCAGTTTTCACACAGGCTTCAGCTAATGTTTCTGACACTCCTTCAACGGATGCCTCTGGTTCCGAATCTACTCAGTCACTCCCCTCCTCGTCCCAAGATCCCACTGATGTAACCCAAGTCTCTCAAAGTCATCACACTACAGGCCAATCACAGCGCTTGTGCACTCATGAAAGAAGGCCACAAGGTGACTTTAAGAGAGGTCgtagaggaagaggaggaggtggaAGGGGGGGGTCAGCTCGTCACATGATACCTACACCTGGGGTAGAACGGTTGGGCAAGCTCACGCATTCTTCTGATGAGATTAATCATGTGAACTCAGGCCCACCGAACACCACACCACAGGGAGAAAGTACAGCACAAGGACAAGAATGTGAACTCAGTGATAATATAACACAGCTCAGGCAGCCTATGAccaatgaagaagaaaaaacagtttCTCAAGAGAAGGTTACATCAGAATCCAACTGTGGACAAAATGTGAGCCAACAAAAAGTGTGTATTTCAAAAGATGTGACACAGACAATCTTACACGAAGGACACCCAGAGAGGGAACATGTGGTTAGAGGATGGAAGCGTGGCGGTCGTGGCTCTGGACGACATCATGGACACTGGCAGGAGAGGAACTTCAAGGGACCCAGTCACTGGGATACTTCTGGAAGCATTGGCCACCGTGGAGGAGGACACAGAGCCAGAGAGGGAGGGGCTGGGCATCATCACAGAGGGGGCGGGGCTCATAGAGGTGGTGGGAGGGGATTGCATCAGAGAGTGGAAAAAGAATTTAGGAAAGAGGGAGTACTCTGACAGTGGGAGAGGGGAGGAGCAGGCATAGAAACAAGCATACCTCCCAGTTTTACCAGCTGTACCGTCATTATGTCAGTGTCTGTAATAAAATTCTCCGCAAGCAGTAAA
>XM_043234051.1
attcatatttacagTCATCTCTGTGTCACCTGACCGATGTCGTGGACGGGTGACGTCACTGCGAACATGGCTGCCGAGAGCGATGTCCTGTCGGAAATTGAAGTGCTGCAGTCCATCTACTTGGATGAGCTTGGTGTTGAACAGAGAGACGGAGGAGGATGGACAATCAGTCTGGTGCTCTATCCCTCCACAGCGGAGGACTGTCTGTCCCAGTTTGTCCGTCTTACATTGACAATGGATCTAGACTCTCAGtttacAGAGTAGTTTGCAGATGGAAGCAGAGTCGTGTATCGGGACAGCTGTACTGTATCAGCTCATAGAGAGAGCCAAAGAGATTCTGACTGAGAGCAATATTCCCCATGGAAACTGTGTCATCTGTCTGTATGGATTTAAGGAAGGGGAAGTGTTCACGAAGACCAGCTGCTATCACTATTTCCATTCTCACTGTCTTGGCCGCTATATCACTCACTCTGAGATGGAGCTGAAGGACCGTGAGAGGGAGCTGGAGGAGGATAAAACCAGAGACGGGACCGAAGAAGAGGGATTATTTGTTGGTTGCCCCGTGTGTCGAGAGCCTCTCACCTATGATTTGGATGCCCTCCTTTCCTCTCCAGCTCCAGTTTTCACACAGCAGGACGATGCAGTCATCGGTGGggaatttaaaaagaaatgggcAGCACTCCAGAAGGTTCTGGAACGGCAGAAGGAAAAGGGTGGAGTTATTGACCCCGAAGCAGAGTCCAATAGATTCCTCATTCACATTAATGAGGCTTCAGCTAATGTTTCTGACACTCCTTCAACGGATGCCTCTGGTTCCGAATCTACTCAGTCACTCCCCTCCTCGTCCCAAGATCCCACTGATGTAACCCAAGTCTCTCAAAGTCATCACACTACAGGCCAATCACAGCGCTTGTGCACTCATGAAAGAAGGCCACAAGGTGACTTTAAGAGAGGTCgtagaggaagaggaggaggtggaAGGGGGGGGTCAGCTCGTCACATGATACCTACACCTGGGGTAGAACGGTTGGGCAAGCTCACGCATTCTTCTGATGAGATTAATCATGTGAACTCAGGCCCACCGAACACCACACCACAGGGAGAAAGTACAGCACAAGGACAAGAATGTGAACTCAGTGATAATATAACACAGCTCAGGCAGCCTATGAccaatgaagaagaaaaaacagtttCTCAAGAGAAGGTTACATCAGAATCCAACTGTGGACAAAATGTGAGCCAACAAAAAGTGTGTATTTCAAAAGATGTGACACAGACAATCTTACACGAAGGACACCCAGAGAGGGAACATGTGGTTAGAGGATGGAAGCGTGGCGGTCGTGGCTCTGGACGACATCATGGACACTGGCAGGAGAGGAACTTCAAGGGACCCAGTCACTGGGATACTTCTGGAAGCATTGGCCACCGTGGAGGAGGACACAGAGCCAGAGAGGGAGGGGCTGGGCATCATCACAGAGGGGGCGGGGCTCATAGAGGTGGTGGGAGGGGATTGCATCAGAGAGTGGAAAAAGAATTTAGGAAAGAGGGAGTACTCTGACAGTGGGAGAGGGGAGGAGCAGGCATAGAAACAAGCATACCTCCCAGTTTTACCAGCTGTACCGTCATTATGTCAGTGTCTGTAATAAAATTCTCCGCAAGCAGTAAA

Function

symbol description
rnf25 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within positive regulation of canonical Wnt signaling pathway. Predicted to be active in nucleus. Orthologous to human RNF25 (ring finger protein 25).

NR:

description
E3 ubiquitin-protein ligase RNF25-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10640 RNF25, AO7; E3 ubiquitin-protein ligase RNF25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234036.1 False 1734 mRNA 0.49 10 12169258 12173874
XM_043234043.1 True 1973 mRNA 0.45 9 12168881 12173874
XM_043234051.1 False 1666 mRNA 0.50 9 12169258 12173874

Neighbor

gene id symbol gene type direction distance location
si:dkey-16l2.16 si:dkey-16l2.16,LOC107729502,LOC107554119,LOC107658507,LOC107730777,LOC108427354,LOC108280555 coding upstream 150 12163610 ~ 12168731 (+)
thoc6 thoc6,LOC107729483,LOC107583000,LOC107689651,LOC107730738 coding upstream 6240 12159182 ~ 12162641 (+)
srrm2 LOC107729482,LOC107583001,LOC107554117,LOC107689653,LOC107730748 coding upstream 10280 12149797 ~ 12158601 (+)
mmp25a LOC107730750,LOC107689654,LOC107729415,LOC107658423,LOC107554116 coding upstream 19750 12145111 ~ 12149131 (+)
unc119.2 LOC107658437,LOC107689658,LOC107730769,LOC107583101,LOC107729484 coding upstream 24994 12141301 ~ 12143887 (+)
kat8 kat8,LOC107582998,LOC107658503,LOC107729500,LOC107689650,LOC107554120 coding downstream 402 12174276 ~ 12177729 (+)
si:dkey-16l2.17 si:dkey-16l2.17,LOC107582999,LOC107729501,LOC107658439,LOC107737763,LOC107689709,LOC107554090 coding downstream 5349 12179223 ~ 12182498 (+)
fus fus,LOC107658502,LOC107554122,LOC103040960 coding downstream 9377 12183251 ~ 12192143 (+)
setd1a LOC107729457,LOC107658500,LOC107737760,LOC107582993,LOC107554121 coding downstream 20104 12193978 ~ 12215690 (+)
hsd3b7 hsd3b7,LOC107582995,LOC107658501,LOC107729456,LOC107737759,LOC107554123,LOC107689649 coding downstream 42737 12216611 ~ 12230379 (+)
G19274 NA non-coding upstream 33924 12132629 ~ 12134957 (+)
G19263 NA non-coding upstream 50106 12118538 ~ 12118775 (+)
G19257 NA non-coding upstream 94378 12074231 ~ 12074503 (+)
G19255 NA non-coding upstream 95808 12072719 ~ 12073073 (+)
G19208 NA non-coding upstream 194875 11967648 ~ 11974006 (+)
G19287 NA non-coding downstream 54061 12227935 ~ 12228520 (+)
G19579 NA non-coding downstream 507384 12681258 ~ 12681565 (+)
G19575 LOC107690704 non-coding downstream 508944 12682818 ~ 12686371 (+)
G19656 NA non-coding downstream 823343 12997217 ~ 13056733 (+)
G19629 ighv4-5 non-coding downstream 831936 13005810 ~ 13096854 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other upstream 50942 12114048 ~ 12117939 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other upstream 68029 12092603 ~ 12100852 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other upstream 119459 12027149 ~ 12049422 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 275225 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 334957 11773200 ~ 11833924 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 58553 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 129490 12303364 ~ 12315046 (+)
G19326 NA other downstream 338052 12511926 ~ 12513721 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other downstream 345963 12519837 ~ 12528803 (+)
LOC122332158 LOC107583070,LOC107737766 other downstream 661507 12835381 ~ 12987913 (+)

Expression


Co-expression Network