Gene
RNA
| Item | Value |
|---|---|
| gene id | G17354 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 9234463 ~ 9240677 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU19479 | True | 1410 | TUCP | 0.53 | 7 | 9234463 | 9240677 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_09226223_09227218 | NA | coding | upstream | 7217 | 9226089 ~ 9227246 (+) |
| CI01000001_09186450_09203866 | FMNL3 | coding | upstream | 30597 | 9186333 ~ 9203866 (+) |
| CI01000001_09164619_09166621 | NA | coding | upstream | 67738 | 9164541 ~ 9166725 (+) |
| CI01000001_09147684_09162673 | ESYT1A | coding | upstream | 71248 | 9147684 ~ 9163215 (+) |
| CI01000001_09132867_09145278 | PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A | coding | upstream | 88944 | 9132867 ~ 9145555 (+) |
| CI01000001_09267532_09267951 | NA | coding | downstream | 26785 | 9267462 ~ 9268132 (+) |
| CI01000001_09285920_09289361 | NA | coding | downstream | 45111 | 9285788 ~ 9289441 (+) |
| CI01000001_09308544_09311741 | NA | coding | downstream | 66024 | 9306701 ~ 9312011 (+) |
| CI01000001_09334528_09350703 | RBMS2B | coding | downstream | 93851 | 9334528 ~ 9351363 (+) |
| CI01000001_09383903_09384322 | NA | coding | downstream | 143226 | 9383899 ~ 9384678 (+) |
| G17507 | NA | non-coding | upstream | 90629 | 9143361 ~ 9143834 (+) |
| G17388 | NA | non-coding | upstream | 143078 | 9088542 ~ 9091385 (+) |
| G17385 | NA | non-coding | upstream | 205512 | 9028681 ~ 9028951 (+) |
| G17359 | NA | non-coding | upstream | 205944 | 9028111 ~ 9028519 (+) |
| G17566 | NA | non-coding | downstream | 140458 | 9381135 ~ 9381660 (+) |
| G17581 | NA | non-coding | downstream | 232934 | 9473611 ~ 9473929 (+) |
| G17583 | NA | non-coding | downstream | 233903 | 9474580 ~ 9474783 (+) |
| G17353 | NA | other | upstream | 5604 | 9216022 ~ 9228859 (+) |
| G17234 | NA | other | upstream | 1201980 | 8032124 ~ 8032483 (+) |
| CI01000001_07531945_07539781 | NA | other | upstream | 1693877 | 7531541 ~ 7540586 (+) |
| G15995 | NA | other | upstream | 3519512 | 5711885 ~ 5714951 (+) |
| CI01000001_05279884_05287123 | NA | other | upstream | 3944507 | 5279837 ~ 5287698 (+) |
| CI01000001_09435836_09436037 | NA | other | downstream | 177651 | 9435836 ~ 9436373 (+) |
| G18896 | NA | other | downstream | 999223 | 10239900 ~ 10241492 (+) |
| G18873 | NA | other | downstream | 1016435 | 10223879 ~ 10260714 (+) |
| G18872 | NA | other | downstream | 1030469 | 10271146 ~ 10281369 (+) |
| CI01000001_10395420_10396473 | NA | other | downstream | 1152880 | 10394851 ~ 10396705 (+) |
