dcaf7 (dcaf7,LOC105030232,LOC105898766,LOC100702343)


Basic Information

Item Value
gene id dcaf7
gene name dcaf7,LOC105030232,LOC105898766,LOC100702343
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11640702 ~ 11645443 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234588.1
ttattttgaaacgcaCACATCCTCCTCAGACCCCAAATGCGCCGTTGAGCGGTCGGGCCTATTTAGGGCTTTCTAAAGTTAGAATTAAAACCGTTGGGACTAAGCAAAAACATGGGCCTTTAGCTACACGCAGTCTTGATTGTTAGATGGTGATCCGTGTGCTTCGCTAAGCAGGTTTTGCGTCGTCGCAGAGCGCAGCTCGTCGTTTTCGCGGCCGTTGCGGAGGAGATTGTTATGACATTCTCTTTGTCTCGCGCTGCATAAACCCACGATCGGCTTTCTCGCTGAAAGAGCATTTTCATCCATCGCTGCAAATCTAGGTATTGTTAACGACCCGATTCTAACTGATTCTCGTCGGTCCGATCGAGGGATTGAAACATGTCGTTGCACGGTAAACGAAAAGAGATCTACAAATACGAGGCGCCATGGACCGTCTATGCCATGAACTGGAGCGTCAGACCAGACAAGCGCTTTCGCCTGGCGCTCGGCAGCTTCGTCGAGGAATATAACAACAAGGTCCAGCTGGTGGGTCTTGAGGAGGAGAGCTCAGAGTTTGTCTGCAGGAACACCTTCGATCATCCATACCCAACCACCAAGATCATGTGGATCCCTGACACCAAGGGTGTCTATCCAGACCTGCTGGCCACCAGCGGAGACTATCTGCGCATTTGGAGGGTGAATGACACAGAGACCCGTCTGGAGTGTCTCCTGAATAATAACAAGAACTCTGATTTCTGTGCACCTCTGACATCTTTTGACTGGAATGAAGTGGATCCCAATCTTCTTGGCACTTCTAGTATTGACACCACCTGCACGATCTGGGGTTTGGAGACGGGGCAGGTCCTAGGACGGGTCAACCTGGTGTCAGGCCACGTCAAAACACAGCTAATTGCTCACGACAAGGAGGTGTATGACATCGCATTCAGTCGTGCGGGTGGAGGTCGAGACATGTTTGCGTCTGTGGGAGCAGACGGATCCGTGCGCATGTTTGACCTGCGACACCTGGAGCACAGCACCATCATCTACGAGGACCCTCAACATCACCCGCTGCTCCGCCTGTGCTGGAACAAACAGGACCCCAATTACTTGGCCACTATGGCCATGGATGGCATGGAGgtggTGATTCTGGACGTGCGTGTGCCGTGCACACCTGTGGCTCGTCTCAATAATCATCGTGCTTGTGTGAACGGCATCGCATGGGCGCCCCACTCCTCCTGTCACATATGTACAGCAGTAGCGGACGATCACCAGGCTCTGATCTGGGACATCCAGCAGATGCCGCGGGCCATCGAGGACCCCATCCTGGCGTACACAGCCGAGGGAGAGATCAATAACGTGCAGTGGGCCTCCACTCAGCCCGACTGGATTGCCATTTGCTACAACAACTGTCTGGAGATCCTGCGGGTGTAAAGCCGAGGCTTAGACCGCCTCTGTGCTTCCAGCATTGCTGGAAGAGAGTCTTTCATGGAGCAGAGACTTGTTTTCTAAAGTTCCTGAGGTCTGGGCGTTTCAAGCGGGAAACTGTATGAACGGGCCAACGGGAACAACAGTCTGAACAATGTGTGTGCAACTTTCGTCTGGGAGAATGACGCTGCGTGAACGAGTATCTGTGTTTCtgcacaatatattatatttgtctgTTTTCCTACTTGCCGGTGTCCCAGAGTCCTCATTATGGGATCTTAAACAGAACTGTAATTACTATGATTGTATGGCCATTTGTGTAGGGAAAGATACATGTTTATTCTGTTTGaccggtaaaaaaaaaaaaacatttttgaaaactagCACTAGCATCAGAAAGTTGTAAAATTGCCAACATGGATGATATAAAACTACCATTTTATTAAGATGTAATTACTTATTTCAAAggttaatacaattttaaaggtCCTCTGAACTTCAgatccaggtttttttttccatttctggaaggtgccattttttttttttgtatctttggAAACTGTTAAATACCGGATGGTATGGAGATGAAAAGCTTGACGTCACTGCAAAACATACACAATTGTTCATCAGACGTGCTCACGACTCATAGCTGTTAGTTGCACTGTTGACGTCAGTGTTTGAGTGGgcaatgtctttttttcattttaagatgcATTACTGAAGAGTTCCTGTTATATTTTTCCCcatgttattttgcatttaaaaaaagtcccCTTTCAGCATGCTTGTGCTCGAAGTGAAACGtgtactgtatacatatataaatattatgtacaAGGTAGGACAAAAGTGTCATTTTTCCAGAATAACTTTGCATTGCGAGTCCATGAAATCGTTCTGTTGTTACGCAAATACGACGTAGTAGTAACACCACACTTTTTGGGTCGAATCAAAAGTGAATTTGCGAGGCTGTGTGGGATCCTCATCCTCACCTCACACTCTTAGATGGAGTGTTTAAATGTAAGTAGTTCTGTGTGTGTCCAGCCATGATGCTTTTCTATTAATAAACTCACTTAATAAACTCTTGTTCTTTCATAAA
>XM_043234596.1
ttattttgaaacgcaCACATCCTCCTCAGACCCCAAATGCGCCGTTGAGCGGTCGGGCCTATTTAGGGCTTTCTAAAGTTAGAATTAAAACCGTTGGGACTAAGCAAAAACATGGGCCTTTAGCTACACGCAGTCTTGATTGTTAGATGGTGATCCGTGTGCTTCGCTAAGCAGGTTTTGCGTCGTCGCAGAGCGCAGCTCGTCGTTTTCGCGGCCGTTGCGGAGGAGATTGTTATGACATTCTCTTTGTCTCGCGCTGCATAAACCCACGATCGGCTTTCTCGCTGAAAGAGCATTTTCATCCATCGCTGCAAATCTAGGTATTGTTAACGACCCGATTCTAACTGATTCTCGTCGGTCCGATCGAGGGATTGAAACATGTCGTTGCACGGTAAACGAAAAGAGATCTACAAATACGAGGCGCCATGGACCGTCTATGCCATGAACTGGAGCGTCAGACCAGACAAGCGCTTTCGCCTGGCGCTCGGCAGCTTCGTCGAGGAATATAACAACAAGGTCCAGCTGGTGGGTCTTGAGGAGGAGAGCTCAGAGTTTGTCTGCAGGAACACCTTCGATCATCCATACCCAACCACCAAGATCATGTGGATCCCTGACACCAAGGGTGTCTATCCAGACCTGCTGGCCACCAGCGGAGACTATCTGCGCATTTGGAGGGTGAATGACACAGAGACCCGTCTGGAGTGTCTCCTGAATAATAACAAGAACTCTGATTTCTGTGCACCTCTGACATCTTTTGACTGGAATGAAGTGGATCCCAATCTTCTTGGCACTTCTAGTATTGACACCACCTGCACGATCTGGGGTTTGGAGACGGGGCAGGTCCTAGGACGGGTCAACCTGGTGTCAGGCCACGTCAAAACACAGCTAATTGCTCACGACAAGGAGGTGTATGACATCGCATTCAGTCGTGCGGGTGGAGGTCGAGACATGTTTGCGTCTGTGGGAGCAGACGGATCCGTGCGCATGTTTGACCTGCGACACCTGGAGCACAGCACCATCATCTACGAGGACCCTCAACATCACCCGCTGCTCCGCCTGTGCTGGAACAAACAGGACCCCAATTACTTGGCCACTATGGCCATGGATGGCATGGAGgtggTGATTCTGGACGTGCGTGTGCCGTGCACACCTGTGGCTCGTCTCAATAATCATCGTGCTTGTGTGAACGGCATCGCATGGGCGCCCCACTCCTCCTGTCACATATGTACAGCAGCGGACGATCACCAGGCTCTGATCTGGGACATCCAGCAGATGCCGCGGGCCATCGAGGACCCCATCCTGGCGTACACAGCCGAGGGAGAGATCAATAACGTGCAGTGGGCCTCCACTCAGCCCGACTGGATTGCCATTTGCTACAACAACTGTCTGGAGATCCTGCGGGTGTAAAGCCGAGGCTTAGACCGCCTCTGTGCTTCCAGCATTGCTGGAAGAGAGTCTTTCATGGAGCAGAGACTTGTTTTCTAAAGTTCCTGAGGTCTGGGCGTTTCAAGCGGGAAACTGTATGAACGGGCCAACGGGAACAACAGTCTGAACAATGTGTGTGCAACTTTCGTCTGGGAGAATGACGCTGCGTGAACGAGTATCTGTGTTTCtgcacaatatattatatttgtctgTTTTCCTACTTGCCGGTGTCCCAGAGTCCTCATTATGGGATCTTAAACAGAACTGTAATTACTATGATTGTATGGCCATTTGTGTAGGGAAAGATACATGTTTATTCTGTTTGaccggtaaaaaaaaaaaaacatttttgaaaactagCACTAGCATCAGAAAGTTGTAAAATTGCCAACATGGATGATATAAAACTACCATTTTATTAAGATGTAATTACTTATTTCAAAggttaatacaattttaaaggtCCTCTGAACTTCAgatccaggtttttttttccatttctggaaggtgccattttttttttttgtatctttggAAACTGTTAAATACCGGATGGTATGGAGATGAAAAGCTTGACGTCACTGCAAAACATACACAATTGTTCATCAGACGTGCTCACGACTCATAGCTGTTAGTTGCACTGTTGACGTCAGTGTTTGAGTGGgcaatgtctttttttcattttaagatgcATTACTGAAGAGTTCCTGTTATATTTTTCCCcatgttattttgcatttaaaaaaagtcccCTTTCAGCATGCTTGTGCTCGAAGTGAAACGtgtactgtatacatatataaatattatgtacaAGGTAGGACAAAAGTGTCATTTTTCCAGAATAACTTTGCATTGCGAGTCCATGAAATCGTTCTGTTGTTACGCAAATACGACGTAGTAGTAACACCACACTTTTTGGGTCGAATCAAAAGTGAATTTGCGAGGCTGTGTGGGATCCTCATCCTCACCTCACACTCTTAGATGGAGTGTTTAAATGTAAGTAGTTCTGTGTGTGTCCAGCCATGATGCTTTTCTATTAATAAACTCACTTAATAAACTCTTGTTCTTTCATAAA

Function

symbol description
dcaf7 Acts upstream of or within cartilage development and embryonic viscerocranium morphogenesis. Located in nucleus. Is expressed in forebrain; head; hindbrain; and somite. Orthologous to human DCAF7 (DDB1 and CUL4 associated factor 7).

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 7

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234588.1 True 2506 mRNA 0.46 7 11640702 11645443
XM_043234596.1 False 2503 mRNA 0.47 7 11640702 11645443

Neighbor

gene id symbol gene type direction distance location
mylk5 LOC107583040,LOC107729567,LOC107658462 coding upstream 11420 11616195 ~ 11629282 (+)
fzd2 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC107721960,LOC107564008,LOC107674136 coding upstream 34525 11603674 ~ 11606177 (+)
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding upstream 46534 11591600 ~ 11594168 (+)
LOC122341817 c1ql1,LOC107729572,LOC107658458,LOC107583048,LOC107674128,LOC103367899,LOC101070426,LOC104923905 coding upstream 125543 11497653 ~ 11515159 (+)
clec19a clec19a,LOC107658453,LOC107583104,LOC107736754 coding upstream 227433 11408037 ~ 11413269 (+)
strada strada,LOC107693497,LOC107658471,LOC107548327,LOC107730762 coding downstream 94836 11740279 ~ 11749928 (+)
snrnp70 LOC107729450,LOC107693498,LOC107658470,LOC107730757,LOC107548330,LOC107583035 coding downstream 108805 11754248 ~ 11762534 (+)
lin7b lin7b,LOC107730776,LOC107548331,LOC107693502,LOC107658474 coding downstream 117229 11762672 ~ 11767501 (+)
zgc:193811 LOC107693501,LOC107548311,LOC107583087,LOC107729427 coding downstream 122445 11767888 ~ 11772504 (+)
aldh16a1 aldh16a1,LOC107693504,LOC107730774,LOC107658477,LOC107583027,LOC107729490 coding downstream 198723 11844166 ~ 11852179 (+)
G19126 NA non-coding upstream 199364 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 203505 11436944 ~ 11437197 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding upstream 259912 11380273 ~ 11380790 (+)
G18982 NA non-coding upstream 265301 11371502 ~ 11375401 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding upstream 346097 11289747 ~ 11294605 (+)
G19184 NA non-coding downstream 67166 11712609 ~ 11719579 (+)
LOC122338225 NA non-coding downstream 189329 11834772 ~ 11835253 (+)
G19208 NA non-coding downstream 322205 11967648 ~ 11974006 (+)
G19255 NA non-coding downstream 427276 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 428788 12074231 ~ 12074503 (+)
G18949 NA other upstream 270950 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 304877 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 798195 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 942162 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1537241 10025818 ~ 10103461 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 127757 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 240212 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 381706 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 447160 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 468605 12114048 ~ 12117939 (+)

Expression


Co-expression Network