cpsf4 (LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613)


Basic Information

Item Value
gene id cpsf4
gene name LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15595214 ~ 15598712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234637.1
AACAAAAATAGCCTTAAAAtcaatgtaaaatatatcagttttcaaatcgATCCCTAGCAGGTTTAAGAATTATCTTGTAATAAAAGTGAATTAGGAAGAAAGTGAAAACTCAGAATTTTACCATCTTTAGAGGGAAGTCTAGGAATgaataattagaataaaaactaaaaatatacatgctaGTTTAGAGCATGTTAGTCAAATCTGAGTCATCAGAGCCAAATGAGAATATTAGTACAGAAAtggatttgaaataaaaattattactatGTTTTATCAAGTAAACGATTTAACACACTAGTGAGCGGTTTAAAAAATACTTGTAGAAACGCAAAAGGCTTTGTTAGTTgacaaaaattatttgatttttataacCGTTTTGAGTCATGGTATGCTGAAAATTATAgaatctatatatttttgttattctttaAGAACAGACAAAGAACAGGTTCTGTTGGGGAGTTACACCTATAAAATTTAAGCTTTATATAATTCagttatctctttttttttttacattttcgtAATCCCGGGTCAGCTAGTCGAGTCCGACACACAATAGTCAGCACTCTTCATAGCACCATTGTTAAGAACTGCATGGCGTTATTAACTGCAGCAGACCTTTTAATCGACTACCAACATACTGATCAAGACCAGCCATTCGTATATTTTTTTGTGCCGCCAAAGTTGCCATCTAACGACAGATCATTGAAACACGTTTTAATATTATCAAGACGAAATTACTCATGTcaacaaatacaattaaataacaaaCAGCATTCGCGCGTTGCTAGAAAATCGATGCTATTGTAATCGATTGCATGTCCTGGAGTTCAAGGGTCACTCGTGAGCGGCGCTGTGGAAGTAGACGGTTCTAAAATCAACTGTTTATTTACAAtgtttatctttatctttacCGATTTACTGATgagctacagtaaaaactgtttaCCCCGTTaataaatctgtgtttttttttttttgctattttctctttttacgTCTAGAATTAAACCTGACCAACGGCAAACTGATAAGTTGTTAGCCGTTAAGACTTTTAGTTTTCTGATTAGGTGTTATAAAGAGAAGGGTTTCAACGTCTggtaatagaaaaaatatacagGTTATACTACAAAAATGCAGGAATTAATCGCGTGTGTCGATCATATCAAGTTTGATTTAGAAATTGCTGTAGAACAACAATTAGGCGCTCAACCATTGCCATTTCCAGGAATGGATAaatctGGCGCAGCTGTATGCGAGTTCTTCATGAGAGCTGCCTGTATGAAAGGTGGAATGTGTCCTTTCAGACACATCAGCGGAGAAAAGACTGTGGTGTGCAAGCACTGGCTTAGAGGTTTATGCAAGAAGGGAGACCAGTGTGAATTTTTACACGAGTATGACATGACAAAGATGCCTGAATGTTATTTCTACTCTAAATTTGGGGAGTGCAGTAATAAAGAGTGTCCATTTTTGCACATTGACCCAGAATCTAAGATTAAAGATTGCCCATGGTATGATAGAGGGTTTTGTAAGCATGGTCCGGACTGCaggcacagacacacaagaAGAGTCATCTGTGTAAATTACCTGGTTGGCTTCTGCCCAGAGGGCAAGTCATGCAAATTTATGCACCCAAGATTTGAACTCCCTATGGGTGCTACTGAACAGCCACCATTACCACAGCAGGCCCAGTCTCAGCAAAAGTTTAATCTCCAGCAGCAAAACATGCAGCCTACAAACAGGTCCTCACAGTCACTCATCCAGTTAACCAAcaccaacatcaacaacaaccaGAGAATGCCAAATGCTGTTGGGATAGTGCACTCTAACAACAACATGGGTGGCCCCCGCGGTCCTCGTCCACTGGATCAAGTTACGTGTTACAAGTGTGGTGAGAAGGGCCACTACGCAAACAAATGCACCAAAGGACACCTGGCGTTTTTGAGCGGACAGTAAAGTTTTCTACAAAAAGGATCTCCAATAAATGTGACTATAACTTGCAAAGTGACATATTTCATTCCTGgtacattaaagaaatagttcacccaaaaaatttaaatttagctGAAAGCTGATTTGGCTTCAGGCTATCCAGAAATTaagtttcttcatcagaacagatttagagaaattttgCATAAcattgtttggactctcattttgaTGAGCAAATGATGTTAAACTTCTCAATCCGTCGACACAAACTCATATAAAtattggatggcctgagggcgagtacatttagattttttgtgggtgaaccatttctttaatttattacTGCAAAAGCTATAGTTGAGAGACAGAAGTGTGGCTCTACCTCACTGTCCATGTGCCAAGTGCATCTCAGTACACAGTGAAAAACGATCAATGACCACCGTTTtcatatagatttttattttactttcacatGAAACCTTATAGTCTTTTGTATTGGAGCAGCAAGCGTCTTGATTGCCTGAACTTTAAAGCGAAGCTGAAATTAGAGCGAAGTATATACTTTTAAGggaaaatgataaacaaaattACCCGAAATTAGAGAGGCAGAAAGGACATCACTTTGTAGTCCATTAAGATacttgtttatattaaatgaaagtgATTGTTGGGTTGTTGTACTTCTTACAAATAAAGATTTACTGGATTTGTAAAACCATCACCTTCGATATGTaatctttgtaaatgtagatAAGTACCACAATGTGGTTTTAGCTTGGAATAGTAGCTTTTGCCTGAATAAACACTTCTCTCATTTTCCTTA
>XM_043234639.1
AACAAAAATAGCCTTAAAAtcaatgtaaaatatatcagttttcaaatcgATCCCTAGCAGGTTTAAGAATTATCTTGTAATAAAAGTGAATTAGGAAGAAAGTGAAAACTCAGAATTTTACCATCTTTAGAGGGAAGTCTAGGAATgaataattagaataaaaactaaaaatatacatgctaGTTTAGAGCATGTTAGTCAAATCTGAGTCATCAGAGCCAAATGAGAATATTAGTACAGAAAtggatttgaaataaaaattattactatGTTTTATCAAGTAAACGATTTAACACACTAGTGAGCGGTTTAAAAAATACTTGTAGAAACGCAAAAGGCTTTGTTAGTTgacaaaaattatttgatttttataacCGTTTTGAGTCATGGTATGCTGAAAATTATAgaatctatatatttttgttattctttaAGAACAGACAAAGAACAGGTTCTGTTGGGGAGTTACACCTATAAAATTTAAGCTTTATATAATTCagttatctctttttttttttacattttcgtAATCCCGGGTCAGCTAGTCGAGTCCGACACACAATAGTCAGCACTCTTCATAGCACCATTGTTAAGAACTGCATGGCGTTATTAACTGCAGCAGACCTTTTAATCGACTACCAACATACTGATCAAGACCAGCCATTCGTATATTTTTTTGTGCCGCCAAAGTTGCCATCTAACGACAGATCATTGAAACACGTTTTAATATTATCAAGACGAAATTACTCATGTcaacaaatacaattaaataacaaaCAGCATTCGCGCGTTGCTAGAAAATCGATGCTATTGTAATCGATTGCATGTCCTGGAGTTCAAGGGTCACTCGTGAGCGGCGCTGTGGAAGTAGACGGTTCTAAAATCAACTGTTTATTTACAAtgtttatctttatctttacCGATTTACTGATgagctacagtaaaaactgtttaCCCCGTTaataaatctgtgtttttttttttttgctattttctctttttacgTCTAGAATTAAACCTGACCAACGGCAAACTGATAAGTTGTTAGCCGTTAAGACTTTTAGTTTTCTGATTAGGTGTTATAAAGAGAAGGGTTTCAACGTCTggtaatagaaaaaatatacagGTTATACTACAAAAATGCAGGAATTAATCGCGTGTGTCGATCATATCAAGTTTGATTTAGAAATTGCTGTAGAACAACAATTAGGCGCTCAACCATTGCCATTTCCAGGAATGGATAaatctGGCGCAGCTGTATGCGAGTTCTTCATGAGAGCTGCCTGTATGAAAGGTGGAATGTGTCCTTTCAGACACATCAGCGGAGAAAAGACTGTGGTGTGCAAGCACTGGCTTAGAGGTTTATGCAAGAAGGGAGACCAGTGTGAATTTTTACACGAGTATGACATGACAAAGATGCCTGAATGTTATTTCTACTCTAAATTTGGGGAGTGCAGTAATAAAGAGTGTCCATTTTTGCACATTGACCCAGAATCTAAGATTAAAGATTGCCCATGGTATGATAGAGGGTTTTGTAAGCATGGTCCGGACTGCaggcacagacacacaagaAGAGTCATCTGTGTAAATTACCTGGTTGGCTTCTGCCCAGAGGGCAAGTCATGCAAATTTATGCACCCAAGATTTGAACTCCCTATGGGTGCTACTGAACAGCCACCATTACCACAGCAGGCCCAGTCTCAGCAAAAGCAGCAAAACATGCAGCCTACAAACAGGTCCTCACAGTCACTCATCCAGTTAACCAAcaccaacatcaacaacaaccaGAGAATGCCAAATGCTGTTGGGATAGTGCACTCTAACAACAACATGGGTGGCCCCCGCGGTCCTCGTCCACTGGATCAAGTTACGTGTTACAAGTGTGGTGAGAAGGGCCACTACGCAAACAAATGCACCAAAGGACACCTGGCGTTTTTGAGCGGACAGTAAAGTTTTCTACAAAAAGGATCTCCAATAAATGTGACTATAACTTGCAAAGTGACATATTTCATTCCTGgtacattaaagaaatagttcacccaaaaaatttaaatttagctGAAAGCTGATTTGGCTTCAGGCTATCCAGAAATTaagtttcttcatcagaacagatttagagaaattttgCATAAcattgtttggactctcattttgaTGAGCAAATGATGTTAAACTTCTCAATCCGTCGACACAAACTCATATAAAtattggatggcctgagggcgagtacatttagattttttgtgggtgaaccatttctttaatttattacTGCAAAAGCTATAGTTGAGAGACAGAAGTGTGGCTCTACCTCACTGTCCATGTGCCAAGTGCATCTCAGTACACAGTGAAAAACGATCAATGACCACCGTTTtcatatagatttttattttactttcacatGAAACCTTATAGTCTTTTGTATTGGAGCAGCAAGCGTCTTGATTGCCTGAACTTTAAAGCGAAGCTGAAATTAGAGCGAAGTATATACTTTTAAGggaaaatgataaacaaaattACCCGAAATTAGAGAGGCAGAAAGGACATCACTTTGTAGTCCATTAAGATacttgtttatattaaatgaaagtgATTGTTGGGTTGTTGTACTTCTTACAAATAAAGATTTACTGGATTTGTAAAACCATCACCTTCGATATGTaatctttgtaaatgtagatAAGTACCACAATGTGGTTTTAGCTTGGAATAGTAGCTTTTGCCTGAATAAACACTTCTCTCATTTTCCTTA

Function

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 4

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234637.1 True 2767 mRNA 0.37 8 15595214 15598712
XM_043234639.1 False 2755 mRNA 0.37 8 15595214 15598712

Neighbor

gene id symbol gene type direction distance location
bud31 bud31,LOC107737741,LOC107720055 coding upstream 141 15593873 ~ 15595073 (+)
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding upstream 11813 15578600 ~ 15583401 (+)
syngr3a syngr3a,LOC107703346,LOC107581789,LOC107674602,LOC107591648,LOC107720048 coding upstream 47339 15542122 ~ 15547875 (+)
gfer gfer,LOC107703347,LOC107581791,LOC107720049,LOC107674715 coding upstream 53280 15538905 ~ 15541934 (+)
ccdc97 ccdc97,LOC107592724,LOC107738100,LOC107720089 coding upstream 133503 15457127 ~ 15461711 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding downstream 9673 15608385 ~ 15618064 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding downstream 40305 15639017 ~ 15697374 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding downstream 220942 15819654 ~ 15823435 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding downstream 225064 15823776 ~ 15828983 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding downstream 236371 15835083 ~ 15846966 (+)
G20415 NA non-coding upstream 6405 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 456314 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 602177 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 605222 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 623553 14971012 ~ 14971661 (+)
LOC122334397 NA non-coding downstream 116020 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding downstream 121535 15720247 ~ 15721303 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 263301 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 274090 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 275321 15874033 ~ 15875959 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 315101 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 410341 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 425956 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 923646 14664919 ~ 14671568 (+)
G20167 NA other upstream 972356 14618994 ~ 14622858 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 108224 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 580908 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 1091991 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1171833 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1514336 17113048 ~ 17117041 (+)

Expression


Co-expression Network