bud31 (bud31,LOC107737741,LOC107720055)


Basic Information

Item Value
gene id bud31
gene name bud31,LOC107737741,LOC107720055
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15593873 ~ 15595073 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234641.1
aGCTCGTTGACGTAAAGATTATTACTAAAGGACCTTTGTCGTGACGTCATCCGCCCGGCGACAGAAATCGGGAAAGTTCTTCATGCAGCAGCAGCTCGCTGTTGCTAAATAACTCTGAGGATCTTATATTGTTTAACTAGCATAATGCCCAAGGTGAAAAGGAGTAGGAAACCACCTCCAGATGGTTGGGAGCTCATAGAGCCGACTCTTGACGAGCTGGACCAGAAAATGCGCGAAGCTGAAACCGAGCCTCATGAGGGCAAACGTAAGGTTGAGTCTCTCTGGCCAATCTTCCGACTTCATCATCAGCGCAGCCGTTACATTTTCGACCTTTTCTACAAAAGGAAGGCCATCAGTCGAGAGCTCTATGAGTATTGCATCAGAGAGGGCTATGCAGACAAGAATCTGATTGCCAAATGGAAAAAACAGGGCTATGAAAACCTGTGCTGTCTGCGGTGCATTCAGACACGCGACACAAACTTTGGAACAAATTGCATATGCAGAGTTCCTAAGGGCAAGCTTGAAGTGggTCGTATCATTGAGTGCACTCACTGTGGATGCAGAGGATGTTCTGGATGAATCAAGAGGCCAACAACTTTTTGAATTTACTGaactttaatttgtattttaatacatttatttggttgTCATTACagtgttggattttttttaaaactgatatGATTGTATGtatatgctctttttttttttttttcattttattctttgtaTTAAACTGTCTTAATTATTCTGGGTTAAACTGTCCAATCTTG

Function

symbol description
bud31 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human BUD31 (BUD31 homolog).

NR:

description
PREDICTED: protein BUD31 homolog

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K12873 BUD31, G10; bud site selection protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234641.1 True 773 mRNA 0.42 4 15593873 15595073

Neighbor

gene id symbol gene type direction distance location
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding upstream 10472 15578600 ~ 15583401 (+)
syngr3a syngr3a,LOC107703346,LOC107581789,LOC107674602,LOC107591648,LOC107720048 coding upstream 45998 15542122 ~ 15547875 (+)
gfer gfer,LOC107703347,LOC107581791,LOC107720049,LOC107674715 coding upstream 51939 15538905 ~ 15541934 (+)
ccdc97 ccdc97,LOC107592724,LOC107738100,LOC107720089 coding upstream 132162 15457127 ~ 15461711 (+)
cacna1ha cacna1h,cacna1ha,LOC107674675,LOC107703431,LOC107592392,LOC108430574 coding upstream 138350 15368800 ~ 15455523 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding downstream 141 15595214 ~ 15598712 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding downstream 13312 15608385 ~ 15618064 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding downstream 43944 15639017 ~ 15697374 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding downstream 224581 15819654 ~ 15823435 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding downstream 228703 15823776 ~ 15828983 (+)
G20415 NA non-coding upstream 5064 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 454973 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 600836 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 603881 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 622212 14971012 ~ 14971661 (+)
LOC122334397 NA non-coding downstream 119659 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding downstream 125174 15720247 ~ 15721303 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 266940 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 277729 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 278960 15874033 ~ 15875959 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 313760 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 409000 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 424615 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 922305 14664919 ~ 14671568 (+)
G20167 NA other upstream 971015 14618994 ~ 14622858 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 111863 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 584547 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 1095630 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1175472 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1517975 17113048 ~ 17117041 (+)

Expression


Co-expression Network