LOC122341287 (LOC107758354,LOC107569871)


Basic Information

Item Value
gene id LOC122341287
gene name LOC107758354,LOC107569871
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8493695 ~ 8498279 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234659.1
CACGGACGCCTGGGAGGAGAAGTGTCGCAGTTTCATGGACCTCACGCCTGCATCAGAAAAAggcaatgacacacacacacactctgagtcTCTGTTGAAACCCTTGCGTGTATCtcagcgtgtttgtgtgtgtgtgtgtgtgtgtgtgcagggatCATGTGGCTCTATGTGGGCATGGAGCTGCTGTACATCTCTCTGTTGAGCATCAGCTCTCTGCTCCTGCTGCTTCAGCTGTGTCTGTCCTCCTGCTCTCCTCCTCAGCAGCGCTGGGCTCATCTACTCAACGCCTTCGCTGCCGTCTGCACTGTACTGggagGGCTGGTTGGGATGGTCGCTCACATGATGTATATGCAGGTGTTTCAGGTGACCATCTCTCTGGGCCCTGAGGACTTCAAACCTCACAGTTACGGATACTCATGGGCCTTTTACGTGGCGTGGGTGGCCTTCACCTGCTGCATGTCGTCCGGCGTGTCCACGCTCAACAACTACACCAAGACGTTTCTGATGGTGGGACCCAAGCAAAGAAGTGTGTTCTACCCCTGCAGGAACTTCACCTTTCCTCCGCAGCCTCCCGCTCTCTCGCCTCTGTCTCCGTACTTCTCTACTGCTGCTCTGCCGCCTCCGCCTCCTCGCCCCGCCCCTCTGTCCCCGTGCCCCGCCCACCAGCTACAGAGCCCCGCCCTCGCTCTCTCTGTGCTGAGTCGCTATCTCCGTGCCCCTCCACCCTCCTTCGTACAACCCCGCCCCCTGTCTCCGAGCCCCGCCCCTGTCTCCCTCGCTCTCGGCTCTTCTTCTGTCTCCGCTCAGCTTTGCGTCTCAGTGTTCAGACGAGGAGTTCAGTCCTCTCTGATCATTCTTGCTCTGTCTTACTGTTTTTCTCTATTAAAGCACACGTGGCTTCAGTTCAGACGCCAAACTCAATCTGAACGGGGTTCAACAGGGTTGTTTTTCTTGTGA

Function

NR:

description
PREDICTED: germ cell-specific gene 1-like protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234659.1 True 957 mRNA 0.57 4 8493695 8498279

Neighbor

gene id symbol gene type direction distance location
wbp2nl wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364 coding upstream 192935 8296132 ~ 8300760 (+)
rrp7a LOC107673310,LOC107591059 coding upstream 264081 8227784 ~ 8229614 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding upstream 266341 8219924 ~ 8227354 (+)
ndufa6 ndufa6 coding upstream 286614 8201599 ~ 8207081 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding upstream 293217 8189453 ~ 8200478 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding downstream 53807 8552086 ~ 8556310 (+)
ddx47 ddx47,LOC106601200 coding downstream 67121 8565400 ~ 8575713 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding downstream 118001 8616280 ~ 8660516 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding downstream 206165 8704444 ~ 8708282 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding downstream 336850 8835129 ~ 8854765 (+)
G18055 NA non-coding upstream 3278 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 179205 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 276478 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 276664 8216524 ~ 8217031 (+)
G18016 NA non-coding upstream 390278 8103050 ~ 8103417 (+)
G18092 NA non-coding downstream 173382 8671661 ~ 8675886 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 382919 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 751820 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 763691 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 915365 9413644 ~ 9414007 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 340801 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 433838 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 527501 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 530719 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 542331 7950854 ~ 7951364 (+)
G18048 NA other downstream 15070 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 46012 8544291 ~ 8551151 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 482312 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 511771 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 640188 9138467 ~ 9183290 (+)

Expression


Co-expression Network