LOC122341295 (LOC107658409,LOC107583094,LOC107729429)


Basic Information

Item Value
gene id LOC122341295
gene name LOC107658409,LOC107583094,LOC107729429
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11313508 ~ 11326361 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234665.1
ACATGGGCGTCCAGAGAATAAATAAAGGCCTGGCGGATAGATTTGCCAGTGGTGCTGCTTTCAACTGAGGGTACTTGACTCTGACTTCACCTGTgtgcatttttagctttttgatAATACCaagtctatctgtctgtctgccaaCATGCTGGTCCGGGCGATCCTGCAGACCTCACTGGTCCTGTGGCTGGTACAGAGCACCATACAAGGAGGAGTTAGGCCACAGACCGGAGCTCTGGGAAGGTTGGCGAGTCGAGGTCCCGGTATTGGTGTAAAGTCTGCAGGTCCAGTGGCTGGTATCCTCGGAGCCCGTGGTTATGGGGCAGGCAAGCCAGGAAAGACAGGACCTGGCCGTTATCTTGGAGGGGCGGCATACAGACCCACTGCGATCAGAGGAGGCCTAAAACAAGGATATGGAACATTCGGTTATGGAGGAGCTGCAAACCTTGGAACCGGCCTTGGAACCGGCCTCGGAACCGGCCTCGGAACTGGCCTCGGGGCAGCCGGTCTGGGACTCGGCACGGGTTATGGCCTAGGCAACGGGCTGGGAGCAGCCTTGGGTTATCCAGCGGGGAAGCTCGGAGGGAGAGGTTACACCGGTAATGGCTATGGAGCACAGCTAGGTTATGGCGCAGGAGGATACCCCGCCGCTGCACGTGGATATGGTGTACCAGCTGGCACACCCACAGGGCAAGGCTCAAAACCATCAAAACTGGGTGTTGGGCCTAGAAGTGGCCAGCCCGTGTCACAGGGAGAGAGGGGCAATGGTTACAGTCGCGGAGGGGTCTCTAACGGACAGGGTGCTATAGCCAATGGTAAAACTCATCCCAGATGCTATGGTCCAGCAGCAGATATGATTAATGGACGAGGAATTATAAACAATGGACCAGTTTTGCCCAACGGACAGGGCACCAAACCATCCAATATGGGATATGGCCTCGGTGCTGCTGGTTATCTTGGAGCTGGTTTTACTGACGGTTATGGAGCAGGTCTAGGGGCAGGTGGATATCCACAGGGAGTGCGAGCAGGAAAGCAGATTGGCTACAGCAATGGATATGGCAGTGAGGTTTATGGTACAGCAGACGGTTATGGAGCGGGACCTGCCTACCCATCAGTGTTAGCTGATAATGTTGGCCTAAACGGTATTGCTGGACTTGGAGCTGGAGGCCTTGGAGGTCCAGGGCTGGTGGTGAACCCCGGCTTGGGTGCTGATGCCAAGTCTAGAAAATATGGGGTGGGTGGAGTTCTTGGAGCTGCCGGATCCTTGCCTTACGGTGGCCAGCCTGTGGTCTCAGCTGGACTTGGCCCTCAAGGCAAGGCTGGTGGTTATGGTGGAGCTACATATGGAGGAATACCAACCCTTGGGCCAGACACTTCTTTGGGTGGTACAGGTGGAGCAATGGAGCCTTTAGCAGGCGGAGCTTTAGGACAGATTCCTTACAGTGCACCGGTCATTGCAGCTGGGCTTGATGTTGATGCTGGTTATCCTTTTGGTGCTGAGCAGCTCAGTCTGGGAGCTGATGCTACAAAGACAGCTGCCAAATACGGCACAGGCTACGCAGCTGCACTAAGTACTGGTGGTCAGGGGCCCTATGGTGgaCAGAAGGATGGAAGCAAGCTTAGTGGCATTTATGGGAACGGGTACAAAGGCTGATTTCCAATGCATCATCAGTGTTTTTTGGCCCCTTTATGCCTAGTGTTCCTCAGCGTTGTGCAGTTTTGTGACATGTTTTTGTCTGCCATATTGTTTTAGTGTTAGTTTTGTGCCCACTTGTGTgggcatgtttgttttgtgtgtcgGTGTGGTTTTAATGTTCATTCTTCTGTTCTTTAACGTTTGTGAATGTTCCCCCAGTTTTGTCCAGTGGAGTGTTTCATGTCCCTTGTGTGTCTCTGTATCTAACTAAACATGCTAAGCACATGATTGgctgttattttaattcttatGAAACACTAAATATTCCACCTCCTAATCTGACTCCTTAGTGTTTGTTTGACAACTATATGATCAATGAAGGGGGGGGGTGACTGCCTAGTCTTGCTCAGTCTTGATGGCAATTAAGGTGTTTAATCATGCACTATTAGCATCAAAACGGGCTAAAAGATGGGTTTGAATTTTGTTGTGagttcatgtttttaaaacgaaACATTACATAATGGTTTAAAGCGAATGCTAACAAAATGACATAAGTCATAATCGGCTGTCATGTGAGTATACGTACTGCTCTCAATTCTCATCAGTTTACAGGAAAACCACATAAAGAGCATCCTGTATCATGCTCATGCGACAACATTTAGGAGGAAACAAGTCAGAGCCATCGTTGAAGGGACAGttaacccccccaaaaaaaaaaattctgttatgaTTTGCTCATTTACTCATGTGTCAAAGACTTTCTTTCTCATAATGTCTTAAGTTCTGTACAATAAAAgtcagtgttgttttggacaCCATTTA

Function

NR:

description
PREDICTED: glycine-rich cell wall structural protein 1.0-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234665.1 True 2458 mRNA 0.49 26 11313508 11326361

Neighbor

gene id symbol gene type direction distance location
paqr4a paqr4a,paqr4,LOC106601588,LOC105897660 coding downstream 10818 11289917 ~ 11302690 (-)
coro1a LOC107729508,LOC107658445,LOC107583063,LOC107674167,LOC107563993 coding downstream 24476 11281806 ~ 11289032 (-)
ppp1caa ppp1caa,LOC108280818,LOC103034594,LOC105897688,LOC103367324,LOC101477563,LOC105894037 coding downstream 36887 11265700 ~ 11276621 (-)
kmt5c LOC107729507,LOC107583067,LOC107732880,LOC107674147,LOC107563992,LOC107658443 coding downstream 50261 11249646 ~ 11263247 (-)
shank1 shank1,LOC107551132,LOC107732841,LOC108427331 coding downstream 68021 11163362 ~ 11245487 (-)
armc5 LOC107729522,LOC107658447,LOC107583055,LOC107732875,LOC107563998,LOC107674164 coding upstream 10022 11336383 ~ 11344017 (-)
LOC122331276 LOC107729439,LOC107583059,LOC107658429,LOC107732876,LOC107564000 coding upstream 20365 11346726 ~ 11352796 (-)
elob tceb2,LOC107564001,LOC108280902,LOC103036770,LOC108427344,LOC105012960 coding upstream 26447 11352808 ~ 11355312 (-)
zgc:153292 zgc:153292,LOC107729440,LOC107658430,LOC107583057 coding upstream 29513 11355874 ~ 11361915 (-)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding upstream 43707 11370068 ~ 11375369 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 544110 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 615969 10689164 ~ 10697539 (-)
LOC122334019 NA non-coding downstream 618004 10689419 ~ 10695504 (-)
G18771 NA non-coding downstream 634928 10677457 ~ 10678580 (-)
G18745 NA non-coding downstream 734368 10574167 ~ 10579140 (-)
G19108 NA non-coding upstream 7395 11333756 ~ 11335800 (-)
G19117 NA non-coding upstream 83974 11410335 ~ 11410716 (-)
G19375 NA non-coding upstream 443361 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 517653 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 540646 11867007 ~ 11871906 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other downstream 248910 11011936 ~ 11064598 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 917167 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 1102892 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 1850603 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 2175419 9134043 ~ 9138089 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 85624 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 367911 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 386459 11712820 ~ 11728001 (-)
G19383 NA other upstream 527387 11853748 ~ 11880959 (-)
LOC122341756 NA other upstream 583414 11909775 ~ 11920767 (-)

Expression


Co-expression Network