tubg1 (tubg1,LOC107721485)


Basic Information

Item Value
gene id tubg1
gene name tubg1,LOC107721485
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14404974 ~ 14415597 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234670.1
ATGTCAGACTTGTTGGAGTTTGAGTTTTGGAAGCAGCTATGTGCTGAGCATGGCATCAGCCCAGAGGGCATCGTAGAGGAGTTTGCCACTGAGGGTACAGACCGGAAAGATGTCTTCTTCTATCAGGCAGATGATGAGCACTATCCTCGTGCTGTGCTGTTGGACCTGGAGCCAGTCATTCACACCATCCTGAACTCTCCATATGCCAACCTATACAACCCAGAGAACATCTACCTGTCTGAGCATGGCGGTGGAGCCGGCAACAACTGGGCCAGTGGCTTCTCTCCAGTGGGGAAATTACAGGTTAACAACGTTAActtgtttgaattaaaatgtggtCAATGTATTCATTTCAGGGAGAAAATCCATGAGGACATCTTTGACATCATTGACAGAGAGGCAGATGGCAGTGACAGTCTGGAGggGTTTGTGCTTTGCCACTCAATCGCTGGGGGAACAGGATCTGGTCTTGGGTCATACCTATTGGAGCGACTGAACGACAGgtATCCTAAAAAACTGGTTCAGACTTACTCTGTCTTTCCTAACCAAGATGAGATGAGTGATGTTGTCGTACAGCCATATAATTCTCTTCTGACGTTAAAGAGACTGACCCAGAATGCAGATTGTGTGGTTGTGCTGGACAATACTGCTTTGAACAGAATCGCCACGGACCGGCTGCACATACAGAACCCTTTCTCTCAGATTAACCAACTGGTGTCCACTATAATGTCAGCAAGCACAACAACCCTCCGTTACCCTGGATATATGAACAATGATCTGATTGGTTTGATTGTCCTCATCCCTACTCCCCGCCTCCACTTCCTCATGACTGGATACACACCACTGACCACCGATCAGGCTGTGGCGAGTGTGAGGAAGACTACAGTTCTTGATGTGATGAGGAGGCTCCTGCAGCCCAAGAATGTTATGGTGTCCACAGGCCGAGACCGTCAGACCAATCATTGCTACATTGCCATTCTCAACATCATTCAGGGAGAGGTGGACCCCACACAGGTCCACAAGAGTTTGCAGCGAATCAGGGAGAGAAAGTTGGCTAATTTTATCCCATGGGGTCCGGCGAGTATTCAGGTGGCACTGTCTCGCCGATCCCCCTACCTGCCGTCAGCTCATCGTGTCAGTGGACTTATGATGGCTAATCACACCAGCATCTCTTCACTGTTTGAGCGTACCTGTCGTCAGTATGATAAGCTGAGGAAGAGGGAGGCCTTCCTCGAACAGTTCAGGAAGGAGGACATATTCAAGGACAACTTTGACGAGCTGGATAACTCTCGTGAGGTGGTTCAGCAGCTCGTGGATGAATACAGCGCCGCCACACGTCCCGACTACATCTCCTGGGGCACACAAGAGCAGTGAAATCCCCTCGGCTCACTCCCTAAAGCTCTCAGAGCGGAAAAGGGCAGGCTCTAAACTCATCCTGTAAAATACACAGTGACTCCAGTAGCGTATAACGTTAGCGAATTTCAGTAGGGAGCCAACTCCAGAGACTTGTGTCCATAAATCTTTTACCATAGTGTTCTGCCAGAGGCTTCTCTGCATTACTGCTGTGGTGAGATCCACTcacgtatatatatttacatgtcaTTTGTCATGTTTACGGGCCTATAAGAAGTTCTTCATAACCTGGTGCCTCTATCCTGAActttcactctttctctttctctctcctcctgtTTTCCTCGATCAGAGTATATTTATGGCTCTGTCTCAATCTATTTTTGTACTGCACTCTGCACTCTTCTGCACAAAATCTACATCAATCTACGTCAAGGTGGCCTGCACACAA

Function

symbol description
tubg1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic sister chromatid segregation. Predicted to act upstream of or within cytoplasmic microtubule organization. Predicted to be located in cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in blastomere; oocyte stage III; and oocyte stage V. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 4; inclusion body myositis; and muscular disease. Orthologous to several human genes including TUBG1 (tubulin gamma 1).

NR:

description
PREDICTED: tubulin gamma-1 chain

GO:

id name namespace
GO:0007020 microtubule nucleation biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0000930 gamma-tubulin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234670.1 True 1804 mRNA 0.48 15 14404974 14415597

Neighbor

gene id symbol gene type direction distance location
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding downstream 48986 14328206 ~ 14355988 (-)
ramp2 LOC107654510,LOC107721488,LOC107601292,LOC107590449 coding downstream 95533 14303150 ~ 14309441 (-)
abcc6b.2 abcc6b.2,LOC107721491,LOC107590377,LOC107720004,LOC107688123,LOC107601225,LOC108437999 coding downstream 112031 14273386 ~ 14292943 (-)
myh11b myh11b,myh11,LOC107654508,LOC107721492,LOC107601223,LOC107590431 coding downstream 152025 14239107 ~ 14252949 (-)
mpv17l si:dkeyp-72e1.7,LOC107654467,LOC107721477,LOC107720000,LOC107590380,LOC107688122,LOC103040893,LOC108438006 coding downstream 196743 14206354 ~ 14208231 (-)
LOC122341422 LOC107654457,LOC107601299,LOC107720081,LOC107688136,LOC107721482 coding upstream 44225 14459822 ~ 14462247 (-)
LOC122341419 LOC107601299,LOC107721482,LOC107654457,LOC107688136,LOC107720081,LOC107590425 coding upstream 46650 14462247 ~ 14556085 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 158165 14573762 ~ 14581763 (-)
gpatch8 LOC107721478,LOC107654521,LOC107674594,LOC107601302,LOC107720016 coding upstream 194664 14610261 ~ 14641128 (-)
baxa baxa,LOC107601305,LOC107721480,LOC107674732,LOC107720019 coding upstream 242133 14657730 ~ 14664833 (-)
G20202 NA non-coding downstream 16576 14385361 ~ 14388398 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding downstream 183177 14220085 ~ 14221797 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding downstream 344482 14059581 ~ 14060492 (-)
LOC122342150 NA non-coding downstream 474697 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 506042 13897631 ~ 13898932 (-)
G20212 NA non-coding upstream 18108 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 33878 14449475 ~ 14451028 (-)
G20231 NA non-coding upstream 187597 14603194 ~ 14604214 (-)
G20230 LOC107674595,LOC107720017,LOC107721479,LOC107601304,LOC107654524,LOC107590367 non-coding upstream 189432 14605029 ~ 14657481 (-)
G20233 asic2,LOC107720021,LOC107654528,LOC107601227,LOC107674665,LOC107720082,LOC107590422 non-coding upstream 216617 14632214 ~ 14687436 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 200624 14202930 ~ 14204350 (-)
G19933 NA other downstream 598996 13805368 ~ 13805978 (-)
gng13b NA other downstream 612372 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 1336784 13005996 ~ 13068190 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 19550 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 705209 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 726220 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1183173 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 2035543 16451140 ~ 16451800 (-)

Expression


Co-expression Network