LOC122341319 (psmc3ip,LOC107601296,LOC107721526,LOC107654517,LOC107720012,LOC107590372,LOC107688134)


Basic Information

Item Value
gene id LOC122341319
gene name psmc3ip,LOC107601296,LOC107721526,LOC107654517,LOC107720012,LOC107590372,LOC107688134
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18572664 ~ 18574419 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234680.1
ATGTTCTCAGCTCTCCTGAAAATCGGTGTCGCACAGATCCTCGCTTACCTGAATGAGAAAAACAGACCATATAGTGCTCAGGATGTCTTTACGAACCTACAGAAGCAGTGTGGTCTGGGTAAAACGGCTGTGGTCAGAGCAATGGAGCAGCTGGCCCAGGAGGGAAAGATTAAAGAGAAAGTCTATGGAAAGCAGAAGATCTACTTTGCGGATCAGTCTCAGTTTGCGGATGTGAGTGATGCTGAACTTAAGGAGATGGATGCTCGCGTTGCAGAACTCGGTGCTGAAGTACAGAGCATCTCGCAGAGCTGCAGGCAGCTGGATACAGAACTGAAGGAGCTCAACGGCTCATTAACCACAGCAGAGATGAAGGCACAGATCCTGGAGCTACAATTTTGA

Function

symbol description
psmc3ip Predicted to act upstream of or within reciprocal meiotic recombination. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ovarian dysgenesis 3. Orthologous to human PSMC3IP (PSMC3 interacting protein).

NR:

description
PREDICTED: homologous-pairing protein 2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234680.1 True 399 mRNA 0.49 6 18572664 18574419

Neighbor

gene id symbol gene type direction distance location
LOC122341960 llgl1,LOC107720045,LOC107674688,LOC107703430 coding upstream 6058 18550993 ~ 18566606 (+)
LOC122342138 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 coding upstream 22237 18545034 ~ 18550427 (+)
hsd17b14 NA coding upstream 33537 18537733 ~ 18539127 (+)
LOC122342177 sgsm3,LOC107737740,LOC107689630,LOC107758493,LOC107695086 coding upstream 35561 18531295 ~ 18537103 (+)
rab40c rab40c,LOC107685905,LOC107590575 coding upstream 54993 18507155 ~ 18517671 (+)
retreg3 fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130 coding downstream 130094 18704513 ~ 18711635 (+)
LOC122342072 psmc3ip,LOC107721526,LOC107654517,LOC107601296,LOC107720012,LOC107590372,LOC107688134 coding downstream 140506 18714925 ~ 18719722 (+)
LOC122329464 rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173 coding downstream 381611 18956030 ~ 18959493 (+)
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding downstream 547904 19122323 ~ 19128648 (+)
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding downstream 629060 19203479 ~ 19261885 (+)
G21076 NA non-coding upstream 414118 18158171 ~ 18158546 (+)
G21073 NA non-coding upstream 453238 18116538 ~ 18119426 (+)
G21045 NA non-coding upstream 505346 17980167 ~ 18067318 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding downstream 268 18574687 ~ 18744585 (+)
LOC122331012 NA non-coding downstream 77942 18652361 ~ 18654715 (+)
G21180 NA non-coding downstream 128165 18702584 ~ 18703683 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding downstream 279690 18854109 ~ 18854543 (+)
G21151 NA non-coding downstream 684498 19258917 ~ 19287649 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other upstream 147588 18405966 ~ 18425076 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other upstream 470731 18097645 ~ 18101933 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other upstream 497048 18074075 ~ 18075616 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 643030 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 666021 17904584 ~ 17906643 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other downstream 107935 18682354 ~ 18687853 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other downstream 151542 18725961 ~ 18732098 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other downstream 158746 18733165 ~ 18733765 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other downstream 254246 18828665 ~ 18841760 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other downstream 294847 18869266 ~ 18876127 (+)

Expression


Co-expression Network