LOC122341334 (LOC107754194,LOC107568235,LOC107690309)


Basic Information

Item Value
gene id LOC122341334
gene name LOC107754194,LOC107568235,LOC107690309
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19987506 ~ 19998472 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234687.1
TCGATAAATGAAGACATCGAGAAGCCACCTTAccgttttttaaataaattaaaccacaTTTATTCACTTGAAAATTAATTACTTAGCCATTTTactttacaaaaagtaaatgttgACACATTCACCATTCACCCCCAAAACGATGTTTTCTGCACGTGAGAATCGGTGTCATCGTTTTCAGGCCAACATCttcaataaaagtaaatgtcaaAACTGCTTCAAACCCGTGGATTCACACATACTCAGCGAAGCAGATCTGATTCAGACTAAGCCTGTCCAGGTGGGCTGGCTGCTCCTGGCCCCAGAGGACGCTGACTTCAGCAGTTGTGTCCCCAGAAAACGGAAATGGCAGAGGAGATATTTTGTGCTTTACGAGCATGGGCTTCTGAGATACTCTCTGGATAAGATGCCAAGTACATTGCCCCAAGGAAGTGTAAACATGTCCCAATGCTGTGAGGTTCTTGATGCTTCATCGCAAACTGGCTTCCAGAACTGCCTGAGGTTGTGCTTCACTGACAGAGACTACTACATCCGAACAGAGAGCACAGATGGCTTCAGCATCAGTAGgTGGCAGGAAAATCTGATTGTTTACCCTAAGGCTGCGAAATCAAATCAGAAGAAGAAGGGAAGGATCCAGCCCACCCACCCACATAcAGACAACAGAAAACCAAACCtccagcaacagcagcagcgTACCAGCGGTGCCACTAAAGGCAGAAGTGTCACCAATAGTATTAAAGGGGCCACCAAAAATGACAGAAGAGGTAGCGTGGTGAACCCGGTGGAGGAGGTCTTGATGCTGTCCTCAGGGAAGAAGCTGGAGGAGGAGCCACTCGGTGTCCTCTCCTCTTCATCGCTCAGTCAGTCCTCGGGCTGCTCTGACACAGACGGTACTAAGAATCGATTGGGCACTGAAAGCGGCTATTCATCTCTGGAGAAGACAAGTTCAAGTCCAAGAGTTGTGgatgcagagacacacactgatACCAGCAGACCTCAGGAAGCTGTTCAACAAGAGGGTTCATTTCTAGATGCCAAGGTTTCCCCCTCAACCCCCCCTACATCCTCTACTGAACAAAAAGACCATAAGACAACTGTTACTTCTCAGGCTTCCTTCACTAATGATATTCCTGATCACTCACAACATTTGATATCATGTAGTCTCCGCTCAAAATCGCTGGAGCGCAGACCGCTTGACTCCACGGCCACAcCTGACCTCCTTAATTTCAAAAAGGGATGGATGTCTAGACTGGGAGAGGATGGAAAGTGGCGGAAACACTGGTTTGTTCTTACAGACCAGACTTTGAGATTCTATCGTGACTCTGCAGCAGAAGAGgcAGCTGATGTGGATGGTGAGATCAACTTGTCTACTTGCTACGATGTTACAGATTTCCCTGTGCAAAGGAACTATGGCTTTCAGATTCATACAAAGGATGGAGTGTTCACCCTTTGTGCAATGACTTATGGGATACGGCGCAACTGGGTCCAGGCAGTAATGAAAAACATTCGTCCCGCCGTTGCCCCAGATGTCACGTGTTCAATTCCTCAGAAGGTGCCAATGACTAGTACACATGCTCGTACAAGCTCCTGCCAATGCAAAACAGTTTCACAGGAGTCCGAGCAAAGGACGCATCCGCAGTGGAACCATAACGGCGAGCGCTCACTGCCTCCTGCACCTGCATCATCCCCTGAAGAGCAGATCTCACATTCGGCCCCTGAGGCAATGAATGAGtatcttcagaaaaaaagagtcTCACAGAGGCAAAGCCTAAACATCATGTCAGCTGATATACCATCGAACTTATCACTTATTGCAATGCCCAGTCGCACCTCCCCAGAATCAATCAGCCCAGACAGCTTAGAGGTTGATGCAGGAACCATATATGTGCCCTATGATGGTCATGGTGAACTACTGGAAGCTAAACCCAAACAAGAAAACCAGGTTGATCGCTCCACATCTCCATTGCCAGTCTCCTTCTCTTCAACTTCAGCGCAGACTGAATGGCAGTGGGATGTGGAGCTTCAGAGCCTGCGTAGAGAACTGAAGGCTGAGCACGAGAGGAATCAGACTGAAGAAAAGGAGTTAAGACTCAGTGAGGCCAGACTCCAAGCTGAGCTTAGTGACAGCAAGGAATGTCTTCAGAGGACAGAGTTAAAGATTCAAGATGCAGAAACTCTTCTGAAGGAGCGTGAGGAGGTGCTGGAGAGTCTGCGTGGGCAGTTGGAAGAGGTAACGGGTCGCCTTAAAGCAACCGAAGAGGCACAAGCCTTGAAAGAGGTCAGGCTACAGAGGCACCTGCGCCTCCTTCAAGAGAGCCAGGAACGAGAAGGAGGAGCTTCAGTGACAGCCTCGACCAATCAGAACAGCGAGCTACAAAACCAGCTGGAAGAGTCAGACAGTGAGGTTTGTCGTCTGCAGGCACGCCTCCAAACTGAAGAGACTCTTTATTATGATATGGAGCATGATTATGAAAGAGCTTGTGAGGAGCTACAGACCCTGCGGGGTGCTCTGCTGGACTGCGAGAGGGCGCTAGAGAGCAAGTTGTGTGACACAGAAGAGCGACTTCGGGAGCTTACCATGCatcttcagcagcagcagcagcaacagctcAACACTGGACCGCATGGACTCAGTGATTCTTGGTGCTCGCGCAGTTCCTCCATAATCCGGAGGGAGCAAAAGGGATCTGAGCTTTTTTATGTCTTGCCTTGGCCAGAGAGTTCCTCATCTGGAACCAAAATGGAAAACAGTTCGAAGCAGGGGGACAGACTTGCTGACATTAGTCCGCCAGAGCTTGCACCATACAGTGAACAAATGGACGATGAAATGGCGACCGATCTTCTTCTAGAGGGCTCTGAGGTACAGCTTGCTTGCAGAAAGAGTCTGGTGGCAGAGCTACGTGCTCAggcccattcactgcagaatcTCTCAACACAGCTACAGTCCACTGTTAGAGAAACCGATCTTCCTGCCGTGTGTCGTAGCATGGAGACTCTTTTCCAGGAACAGACAGAGCGCTATGAAGAGAAGCTGCGCGAGGAGCGTGTTGTTGTGGAAAAGGCAGAGCAGGAGCGTGTTTCGGCAGAGACTAATGCTCAACTGAGGACGGAAGAAGCCAAAAAATTGCAGTTGGAGTTTGAGGAGAAGCTCCAAGAGCTCCAGAAAATCCATGAAGAGGAGATGAGCCGTCTTCATGAATATTACATTGAAACCTTGTCAAGGCCAAATGCTGCAACTCTCTCAGAACTAGAGGAGAATGAAGAGAAGGTGACTGCTCTGCAAGACCGAATCAGAGAGCTTGAGACTGAGGTGACTTGTTTGAAGACGGATCTTAGTAACCAGGATGTCAAAGCCTTCAAGCTTGACCTGGAAACCATCAAGGCCACGTATGAGCATGGTTTCAGCATTATGGAAGATAGCCACCAGCGAGTGATTGAGGAGATGCAGAGGCAGCATCAGAAAGAGGTGGAGAGACTGACAGAGGAACGAGAAAGAGTACTGCAGGAGGAGACGAATGCCACCATTGCAGctATTGAGGCTATGAGGAAAGCTCATAAAGAGGAAATGGATAAGACACAGAAAGCCCTGCAAAATGGAGCCAATGTGGACATCCGCCAGCTTCATGCACAATACAATGAGGAGCTGGAAACTTTGCACAGGGAGCTGGAAGTGTTGTCAGAGCAGTATTCTCAGAAATGCCTGGAAAATACTAATTTGAATCGGACTATAGAAACAGAAAGGGAATCATTGAGTACAACGCAGAGAGAGAACCAGGAGCTTCACATTCACAACCAGGTACATGCACAAGCACACAGAAAATTGTGCACATTCACACAGCCTTTGCTTATCTTGCATATGTATCACCTATTTTTCTAA

Function

NR:

description
PREDICTED: myosin-11-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234687.1 True 3877 mRNA 0.48 24 19987506 19998472

Neighbor

gene id symbol gene type direction distance location
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding upstream 45926 19930733 ~ 19941580 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding upstream 66235 19917670 ~ 19921271 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding upstream 475999 19509088 ~ 19511507 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding upstream 533191 19451411 ~ 19454315 (+)
hsd17b1 hsd17b1 coding upstream 537844 19447171 ~ 19449662 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding downstream 21 19998493 ~ 19999588 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding downstream 11661 20010133 ~ 20021740 (+)
LOC122341339 LOC107754194,LOC107568235 coding downstream 73472 20071944 ~ 20077001 (+)
LOC122341340 NA coding downstream 78530 20077002 ~ 20082045 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding downstream 150042 20148514 ~ 20160181 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 17087 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 35575 19928729 ~ 19951931 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 76823 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 111185 19873439 ~ 19876321 (+)
G21543 LOC107731003,LOC107653351,LOC107754129,LOC107690299 non-coding upstream 146461 19797691 ~ 19841045 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 161964 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 170164 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 175222 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 231543 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 341419 20339891 ~ 20345356 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 584330 19399408 ~ 19403176 (+)
G21213 NA other upstream 695165 19291445 ~ 19292341 (+)
G21202 NA other upstream 994272 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1111379 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 1145746 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 65798 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 96379 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 187063 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 883726 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1297230 21295702 ~ 21414286 (+)

Expression


Co-expression Network