LOC122341335 (LOC107754194,LOC107568235,LOC107690309)


Basic Information

Item Value
gene id LOC122341335
gene name LOC107754194,LOC107568235,LOC107690309
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19998493 ~ 19999588 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234688.1
ATCTGAATTGTCCCTGATGCATTCACGCATGAATGGGGAGGTGAAACATTCACAATCTTCTCAGGAGAAAGACGTGTATCAGCTGGAGGTAAATCTCAGAGTAAAGGAATCGGAGATTAAGTGTCTAAAACAGGAGATCAACTCACTTAAACTGGAACTGCAGGCGGGAAATATGtattttaaagaaCTAAACTCTGAGCTGGTTGCTTCAGAAGTCAAAACTCAAAGTGACTTAAATAAACTAAGGATGGCGCCAGCAAGACAACACAGTTTAAAATACGATCTGATGAAATCCAGGAGCAACCCAGACTTCCCAAAGGACCATGCTACTCTTACGCAGACCGTCAGATCCAAGAGTCTTAAGATGGACTCACAGTTCAGGAGAGGATGA

Function

NR:

description
PREDICTED: myosin-11-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234688.1 True 391 mRNA 0.42 5 19998493 19999588

Neighbor

gene id symbol gene type direction distance location
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding upstream 21 19987506 ~ 19998472 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding upstream 56913 19930733 ~ 19941580 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding upstream 77222 19917670 ~ 19921271 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding upstream 486986 19509088 ~ 19511507 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding upstream 544178 19451411 ~ 19454315 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding downstream 10545 20010133 ~ 20021740 (+)
LOC122341339 LOC107754194,LOC107568235 coding downstream 72356 20071944 ~ 20077001 (+)
LOC122341340 NA coding downstream 77414 20077002 ~ 20082045 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding downstream 148926 20148514 ~ 20160181 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding downstream 201688 20201276 ~ 20229670 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 28074 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 46562 19928729 ~ 19951931 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 87810 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 122172 19873439 ~ 19876321 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding upstream 166046 19824721 ~ 19832447 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 160848 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 169048 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 174106 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 230427 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 340303 20339891 ~ 20345356 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 595317 19399408 ~ 19403176 (+)
G21213 NA other upstream 706152 19291445 ~ 19292341 (+)
G21202 NA other upstream 1005259 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1122366 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 1156733 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 64682 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 95263 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 185947 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 882610 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1296114 21295702 ~ 21414286 (+)

Expression


Co-expression Network