LOC122341339 (LOC107754194,LOC107568235)


Basic Information

Item Value
gene id LOC122341339
gene name LOC107754194,LOC107568235
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20071944 ~ 20077001 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234690.1
ATGAATcAGACAACAGAAAACCAAACCtccagcaacagcagcagcggTAGCGGTGGCCCTGCTAAAAGAAGCAGCACTTCTGGAAATAGTTCCACCAGCGTTGTTAAAAGACAAGGCAGCATCGGTTCTAGTAGTTACAGCAGCGCCAAAGTGTCTGTCAGCGACAATGCTGGCACTAGTACCAGCGGTGCCACTAAAGGCAGAAGTGTCACCAATAGTATTAAAGGGGCCACCAAAAATGACAGAAGAGGTAGCGTGGTGAACCCGGTGGAGGAGGTCTTGATGCTGTCCTCAGGGAAGAAGCTGGAGGAGGAGCCACTCGGTGGTGAAGTCGGGGTTCCTTCCAGCAATGCTTCATCACTCGATATCAAGCTTGAGTCCTCTCCCTCTTCATCGCTCAGTCAGTCCTCGGGCTGCTCTGACACAGACGGTACTAAGAATCGATTGGGCACTGAAAGCGGCTATTCATCTCTGGAGAAGACAAGTTCAAGTCCAAGAGTTGTGgatgcagagacacacactgatACCAGACCTCAGGAAGCTGTTCAACAAGAGGGTTCATTTCTAGATGCCAAGGTTTCCCCCTCAACCCCTACATCCTCTACTGAACAAAAAGACCATAAGACAACTGTTACTTCTCAGGCTTCCTTCACTAATGATATTCCTGATCACTCACAACATTTGATATCATGTAGTCTCCGCTCAAAATCGCTGGAGCGCAGACCGCTTGACTCCACGGCCACAcCTGACCTCCTTAATTTCAAAAAGGGATGGATGTCTAGACTGGGAGAGGATGGAAAGTGGCGGAAACACTGGTTTGTTCTTACAGACCAGACTTTGAGATTCTATCGTGACTCTGCAGCAGAAGAGgcAGCTGATGTGGATGGTGAGATCAACTTGTCTACTTGCTACGATGTTACAGATTTCCCTGTGCAAAGGAACTATGGCTTTCAGATTCATACAAAGGATGGAGTGTTCACCCTTTGTGCAATGACTTATGGGATACAGCGCAACTGGGTCCAGGCAGTAATGAAAAACATTCGTCCCGCCATTGCCCCAGATGTCACGTGTTCAATTCCTCAGAAGGTGCCAATGACTAGTACACATGCTCGTACAAGCTCCTGCCAATGCAAAACAGTTTCACAGGAGTCCGAGCAAAGGAGTCGCATCCGTGAGCGCCGTAGAGAGGGGCGCTACAAAACCTTTGATTGGGCAGAATTGAGTTGTAAACATCACAAGGAGGAGTTGTCAAATGATCCATCTGGAAGGCAGTGGAACCATAACGGCGGCGCTCACTGC

Function

NR:

description
PREDICTED: myosin phosphatase Rho-interacting protein-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234690.1 True 1299 mRNA 0.49 9 20071944 20077001

Neighbor

gene id symbol gene type direction distance location
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding upstream 50204 20010133 ~ 20021740 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding upstream 72356 19998493 ~ 19999588 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding upstream 73472 19987506 ~ 19998472 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding upstream 130364 19930733 ~ 19941580 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding upstream 150673 19917670 ~ 19921271 (+)
LOC122341340 NA coding downstream 1 20077002 ~ 20082045 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding downstream 71513 20148514 ~ 20160181 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding downstream 124275 20201276 ~ 20229670 (+)
bckdhbl LOC107731123,LOC107689045 coding downstream 171075 20248076 ~ 20251489 (+)
cacnb1 cacnb1,LOC106607253,LOC108413880,LOC107670911,LOC107689043,LOC107552492 coding downstream 177823 20254824 ~ 20284900 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 101525 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 120013 19928729 ~ 19951931 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 161261 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 195623 19873439 ~ 19876321 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding upstream 239497 19824721 ~ 19832447 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 83435 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 91635 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 96693 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 153014 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 262890 20339891 ~ 20345356 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 2691 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 668768 19399408 ~ 19403176 (+)
G21213 NA other upstream 779603 19291445 ~ 19292341 (+)
G21202 NA other upstream 1078710 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1195817 18869266 ~ 18876127 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 17850 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 108534 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 805197 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1218701 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1560742 21637743 ~ 21734127 (+)

Expression


Co-expression Network