LOC122341340



Basic Information


Item Value
gene id LOC122341340
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20077002 ~ 20082045 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043234691.1
CTCCTGCACCTGCATCATCCCCTGAAGAGCAGATCTCACGTTCAGCCCCTGAGGCAACGAATGAGtatcttcagaaaaaaagagtcTCACAGAGGCAAAGCCTAAACATCATGTCAGCTGATATACCATCAAACTTATCACTTATTGCAATGCCCAGTCGCACCTCCCCAGAATCAATCAGCCCAGACAGCTTAGAGGTTGATGCAGGAACCATATATGTGCCCTGTGATGGTCATGGTGAACTACTGGAAGCTAAACCCAAACAAGAAAACCAGGTTGATCGCTCCACATCTCCATTGCCAGTCTCCTTCTCTTCAACTTCAGCGCAGACTGAATGGCAGTGGGATGTGGAGCTTCAGAGCCTGCGTAGAGAACTGAAGGCTGAGCACGAGAGGAATCAGACTGAAGAAAAGGAGTTAAGACTCAGTGAGGCCAGACTCCAAGCTGAGCTTAGTGACAGCAAGGAATGTCTTCAGAGGACAGAGTTAAAGATTCAAGATGCAGAAACTCTTCTGAAGGAGCGTGAGGAGGTGCTGGAGAGTCTGCGTGGGCAGTTGGAAGAGGTAACGGGTCGCCTTAAAGCAACCGAAGAGGCACAAGCCTTGAAAGAGGTCAGGCTACAGAGGCACCTGCGCCTCCTTCAAGAGAGCCAGGAACGAGAAAGGAGGAGCTTCAGTGACAGCCTCGACCAATCAGAACAGCGTTCGAAGGAACTAGAGGAGCGTCTCAGGCAGAAAGAGGCTGAACTGCAGAAAAGGCCAACAGGGGACATTACTGATGAACTTCTGCGAAGGTGCCAGGAGCTACAAAACCAGCTGGAAGAGTCAGACAGTGAGGTTTGTCGTCTGCAGGCACGCCTCCAAACTGAAGAGACTCTTTATTATGATATGGAGCATGATTATGAAAGAGCTTGTGAGGAGCTACAGACCCTGCGGGGTGCTCTGCTGGACTGCGAGAGGGTAAGCGAGGAGCGCTTTCAAACCCAGCTGGTGCAACAACAGAAAGAGATAGACAGGAAGGAACAAGAACTACAGGAAGTGCTTCTTAAGatggccatcttgggcagtAGTTTAGAGGAGACCGAGCAAAGGCTCAAGCAAGCTCAATCTTCTGAAGCTAATGTTTTCTGTGAGGCATTGATTGAGCCACAACAGTGCAGACAGAAATGGCAGAGTGATTTGGAAATGCAACCCACTACTCAGGTAGACGAGTCCCATAGAGTGATCTCTGTAATCCAGGCGCTAGAGAGCAAGTTGTGTGACACAGAAGAGCGACTTCGGGAGCTTACCATGCatcttcagcagcagcagcagcaacagctcAACACTGGACCGCATGGACTCAGTGATTCTTGTTTTACTGAAGCTTTAGACAGAGCCTCAGACAAAGTTAAAGCTCCCCTTTATGATGATGGAAAGCCTGGAAGGCAGAGTTTGGTTGGCGAAAGTTCAGGAAGAAATCAGTCTTTAGAGATGGCCTGCAGTGTTTTGTCACTGGAGGCACTGATTATCCAACGGATTGCCTCTGCACTTGAGCATCCCAGCTCAAATTTGCTTAATAAGTTGTCAGAAGTGCATGTCCAGGTGCTTAGGATGGCTCAAGGAGGAAGTCATAATGGGTCTTTGGATCCTAGTTACTCACAGGTCTTCTTGGACCCTCTTGAGGAAGATCTGGTAGACAGAGCAAAGGGATCTGAGCTTTTTATGTCTTGCCTTGGCCAGAGAGTTCCTCATCTGGAACCAAAATGGAAAACAGTTCAAGCAGGGGACAGACTTGCTGACATTAGTCCGCCAGAGCTTGCACCATACAGTGAACAAATGGACGATGAAATGGCGACCGATCTTCTTCTAGAGGGCTCTGAGGTACAGCTTGCTTGCAGAAAGAGTCTGGTGGCAGAGCTACGTGCTCAggcccattcactgcagaatcTCTCAACACAGCTACAGTCCACTGTTAGAGAAACCGATCTTCCTGGTGAACTACCCTCAGCCATCCTGAGGGCTGCAATTTGTCAGGCCACTTTGGCATACATGGCCTGTCGTCTTCGTTCTGCCCTGCAGCAGGAGATGAAGACTAATGCTCAACTGAGGACGGAAGAAGCCAAAAAATTGCAGTTGGAGTTTGAGGAGAAGCTCCAAGAGCTCCAGAAAATCCATGAAGAGGAGATGAGCCGTCTTCATGAATATTACATTGAAACCTTGTCAAGGCCAAATGCTGCAACTCTCTCAGAACTAGAGGAGAATGAAGAGAAGGTGACTGCTCTGCAAGACCGAATCAGAGAGCTTGAGACTGAGGTGACTTGTTTGAAGACGGATCTTAGTAACCAGGATGTCAAAGCCTTCAAGCTTGACCTGGAAACCATCAAGACCACGTATGAGCATGGTTTCAGCATTATGGAAGATAGCCACCAGCGAGTGATTGAGGAGATGCAGAGGCAGCATCAGAAAGAGGTGGAGAGACTGACAGAGGAACGAGAAAGAGTACTGCAGGAGGAGACGAATGCCACCATTGCAGctATTGAGGCTATGAGGAAAGCTCATAAAGAGGAAATGGATAAGACACAGAAAGCCCTGCAAAATGGAGCCAATGTGGACATCCGCCAGCTTCATGCACAATACAATGAGGAGCTGGAAACTTTGCACAGGGAGCTGGAAGTGTTGTCAGAGCAGTATTCTCAGAAATGCCTGGAAAATACTAATTTGAATCGGACTATAGAAACAGAAAGGGAATCATTGAGTACAACGCAGAGAGAGAACCAGGAGCTTCACATTCACAACCAGGAATTAAATGAGTTTTTGGCATCTGAATTGTCCCTGATGCATTCACGCATGAATGGGGAGGTGAAACATTCACAATCTTCTCAGGAGAAAGACGTGTATCAGCTGGAGGTAAATCTCAGAGTAAAGGAATCGGAGATTAAGTGTCTGAAACAGGAGATCAACTCACTTAAACTGGAACTGCAGGCGGGAAATATGtattttaaagaaCTAAACTCTGAGCTGGTTGCTTCAGAAGTCAAAACTCAAAGTGACTTAAATAAACTAAGGATGGCGCCAGCAAGACAACACAGTTTAAAATACGATCTGATGAAATCCAGGAGCAACCCAGACTTCCCAAAGGACCATGCTACTCTTACGCAGACCGTCAGATCCAAGAGTCTTAAAGATGGACTCACAGTTCAGGAGAGGATGAAGCTTTTTGAATTAACCAGCACGCAAAAGAtttgactctgtgtgtgtgcgtctgtgtgatagagagagagaaa

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043234691.1 True 3265 mRNA 0.47 13 20077002 20082045

Neighbor


gene id symbol gene type direction distance location
LOC122341339 LOC107754194,LOC107568235 coding upstream 1 20071944 ~ 20077001 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding upstream 55262 20010133 ~ 20021740 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding upstream 77414 19998493 ~ 19999588 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding upstream 78530 19987506 ~ 19998472 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding upstream 135422 19930733 ~ 19941580 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding downstream 66469 20148514 ~ 20160181 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding downstream 119231 20201276 ~ 20229670 (+)
bckdhbl LOC107731123,LOC107689045 coding downstream 166031 20248076 ~ 20251489 (+)
cacnb1 cacnb1,LOC106607253,LOC108413880,LOC107670911,LOC107689043,LOC107552492 coding downstream 172779 20254824 ~ 20284900 (+)
arl5c arl5c,LOC107670909,LOC107754318,LOC107567387,LOC107745936,LOC107689047,LOC108260527 coding downstream 205118 20287163 ~ 20290477 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 106583 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 125071 19928729 ~ 19951931 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 166319 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 200681 19873439 ~ 19876321 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding upstream 244555 19824721 ~ 19832447 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 78391 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 86591 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 91649 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 147970 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 257846 20339891 ~ 20345356 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 7749 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 673826 19399408 ~ 19403176 (+)
G21213 NA other upstream 784661 19291445 ~ 19292341 (+)
G21202 NA other upstream 1083768 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1200875 18869266 ~ 18876127 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 12806 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 103490 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 800153 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1213657 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1555698 21637743 ~ 21734127 (+)

Expression



Co-expression Network