LOC122341343 (spns1,LOC107552478,LOC107754623,LOC107689070,LOC107739389,LOC107660866,LOC107567150)


Basic Information

Item Value
gene id LOC122341343
gene name spns1,LOC107552478,LOC107754623,LOC107689070,LOC107739389,LOC107660866,LOC107567150
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20528051 ~ 20541188 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234693.1
GGAATAAATTATTGCGTGAGCGAGCCTTCGTTGTGTGACGTCACGGCCTCAGCGAGGGCGCGCGCGGAAACCAAACATGGCTGAAATGGTAGCAGACAGTGACGGGGGTGTACCTGCATCAGACCCTCCAAAACAACCCCCCAAGCGCCGACGCATCCTCGACGCGTCCTCCATCACCACAGCGCCTGTTTACTCCAACAAGgttAACAGCTCCTTAAATCTCAAGCCAATAACCTTCAAACAAACCGCTCTCACAGACGAGGAAAAGGGTTGTCCTCTGTGGTGTCCCTCCCCACCTCGTATAGAGAGAAAGCCAATCAGCCTTGATCTGAGTGGCTCGGAGGAGGAGCCAGAACAGGCTGAAGTTCAGCAGATCCTCCATTCCCCCTCTCCACCCCCTTCACCTTGTAGTCTACCAGTGAAACGGAGCAGACGGGCAAACCGAAAATTACAAGAAATCAACAGGAAATTGCACGCAATTGGCTCTCTGGCGTGTCTCTCACCTGAGCCTCGGGAGCCTGCGGCCGAAAACAGAGACTCTCCATCTCCCGAGAGTGACgatgatgacatcatcatcatttctTCTGACAGCCAAAAGAAACGACGTGCCCAGAATACTGAGGACAGAGACTCAGCGCGGGAAATTTCACTAAAAGTTCGCTGTCGAACGGAGTTGTACAAAATCCCAATACTCTCTACAGCTCCTTTGAGTAAAGCTGTGGAACAGTTGGCCAGCAAACTCGATGTGCAACCCAGCCAAATTCTGTTACTAAAGAAAGATATTGATCTCCCTATTCACTCGTCCATCAGTGAGCTGGGGCTCGGGATAGCTGACATTATAGATTGTGTAGTAACGGAGAATAAACAAGAAGAGCTCGACAAAAGCAATGTCATTACTGTACGACTGCAAGGCAAGGAGAAAGCATCTGTGCAGGAGTATTCCCTACAAAAGAATGCTCCTTTAGGGTCCATCCTATCCCAGTACATCTCTGGTTTGAGCACCAGTGCTAGATGGAAACCCAAATTTCTCTTCGATGGGTCAAGGGTCTCATATAATCAGACCCCAGCTGACCTGGACATGGAGGACGGGGATGTCATTGAAGTCTGGTTGATGTCAGGAACAGACACCACACCCTTTTTCTCAGATGATAATGAGGGGGAGGGGCCTATCGACAATGGGGTGGGATCACCTCAGCCcgaagagaggaaggagtctGCTAGCGGAGTGTCTGATAAGAGGGCTAAACTTACTGTGGCTGTGCTCTGCTACATCAACCTGCTGAACTATATGGACCGATTCACTGTGGCAGGTGTACTTCCAGACATTGAGCATTTCTTCAGCATTAGTGATGGAACATCAGGACTACTTCAGACAGTCTTCATCTGCAGTTACATGTTCCTGGCTCCTCTGTTTGGATATCTGGGAGACCGCTATAACAGGAAGCTGATTATGTGTGTGGGGATTTTTTTCTGGTCCCTAGTGACATTAGCCAGTTCCTTCATTGGAAAAGACCATTTCTGGGCGTTGTTGTTGACGCGAGGGCTGGTGGGTATTGGGGAGGCCAGTTACTCCACCATAGCTCCCACCATCATCGCTGACCTTTTCATCAAGGAGACAAGGACCAACATGCTGTCCATTTTCTACTTTGCAATCCCAGTGGGCAGTGGTCTGGGTTATATCGTGGGCTCAAAGGTGGATGATGTGGCTGAGGATTGGCACTGGGCTCTTCGGGTGACCCCTGGTCTGGGGCTGCTGGCTGTGATCCTCTTGTTTTTTGTAGTTCAGGAGCCGAAGCGGGGTGCGATCGAAGCTCATCCAGAGCACACGCTGCACAGAACCAGCTGGCTGGCAGACATAAAAGCACTCTGCAGGAATCCAAGTTTTGTTCTGTCCACGTTTGGCTTCACGACTGTGGCCTTTGTGACAGGATCACTGGCACTGTGGGCCCCTGCCTTTTTATTCAGAGCGGGTGTCTTCACGGGAGAGAAGCAGCCGTGTTTAAAAGCCCCCTGTGACAACTCTGACAGTCTGATTTTTGGCATCGTCACAGTCGTGACGGGTATCCTGGGAGTAGCGAGTGGTGTGCAAGTGAGCAAGAAGCTGAGGACCAGAACCCCTCGAGCTGATCCGTTAGTCTGTTCTGCAGGACTCCTCCTCGCTGCCCCCTTTCTCTATCTGTCCATCATGTTTGCTCAGGCTAGCACTGTGGCCACATATGTCTTTATCTTCCTGGGAGAGACATTCCTGTCTATGAATTGGGCCATTGTTGCTGATATCCTTCTGtATGTTGTGATCCCCACACGGCGCTCCACAGCAGAAGCCTTTCAGATTGTACTCTCACACTTGCTGGGCGACGCTATTAGCCCTTACCTCATAGGAGTGGTGTCCGACTCGCTAAAGAAATCAGACTCGTACATGTGGGAGTTTCGTTCACTTCAGCTGTCCCTCCTGCTGTGCACCTTTGTGGCAGTGGGGGGCGGGGCTTTCTTCCTGGCCACGGCTCTCTTCATTGAGAAGGACCGGCATCTGGCAGAGAACTACGTGCCCTCTGatgaTGCACCAATTGTTGTTCCAAAGAGAGGGAGGTCCACTAAAGTACCAGTGTCAAGTGTTTTAATTTGAGATGTCCCAAGGATTTGGATTGCTCTCAGCAATGGGAACAGCACTGGCCAAAGCAGACAGAGCCAGTGCCTTCAGCAGCCAATCCTGGGGCACTAATCACCGATTGGACTGTCTCCACAATAGGgagttttacagtaatttattatgctcatatttttgtttatgtccTTAACACATTGATTTGGGAACATtctgaactaacaaaaaaaaccagGAAGGTCTTACGTTGAAGTCCTTTGTGCCGTTGACCATTGGATGAGTCCTGTGGGAGGAGACAGAAGCACATGGGAGCACATGAAACAATGGTCATATGTTGATGGCATTTCTTTGCTTTTAATTGTAACTCATCGAGCGGTTTTAGAAttcatgtaaattatattttagatgtttttatcgGAGGGGATATtacgttttttgttgttgttttttttagactgTTGTCTCATTTTAACTAAAACCAAGTTATTCTCAAAATGCCgctgcatttgtttttctcaaaCCTGGACTGTGACTGATAACCAGCAGAATCAGACTGAGCTTGGGCAGAACTGAAGTGTGTCTGTGATCTGCCTTCAGTCTTtcctcctgtttttttttttttttccttcttgctAACATTTCAGCTTTTAGTCTTTTAAAAAGTTCCCTGAGACACTAAGGCTACCATGGCATGAATCGcatattaattcatttgatttatgttttttcaaaacaacattgttACATATGTATGGCAAGGGTATGTTGGTTCATATATTGGTTGCCTGGTTCATGGCATGTTTTAATGTGCCAGTTTAACTGTAAGAAaccttttttggttttgtttttaaaggaaaacactTTGTAGTGCATTCCCTCTGCCGTTGTTGCTTGAGTTTATTTGCAGTTATTTCAGTCTAATCttgttttgtaactttttttttaacattaattgattaaattgaatttaatctCA

Function

symbol description
spns1 Predicted to enable transmembrane transporter activity. Acts upstream of or within autophagosome maturation and cellular senescence. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in yolk syncytial layer. Orthologous to human SPNS1 (sphingolipid transporter 1 (putative)).

NR:

description
PREDICTED: protein spinster homolog 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234693.1 True 3578 mRNA 0.47 22 20528051 20541188

Neighbor

gene id symbol gene type direction distance location
sgf29 sgf29 coding upstream 1419 20522868 ~ 20526632 (+)
LOC122342097 LOC107660919,LOC107567207,LOC107754572,LOC107689067,LOC107552480,LOC107735422,LOC107739406 coding upstream 45314 20478686 ~ 20482737 (+)
si:dkey-93n13.2 LOC107754579,LOC107567217,LOC107661267,LOC107689100,LOC107739413,LOC107552446 coding upstream 50818 20474185 ~ 20477233 (+)
LOC122341263 LOC107689064 coding upstream 54640 20470981 ~ 20473411 (+)
zgc:66474 LOC107754539,LOC107567164,LOC107660968 coding upstream 58205 20461375 ~ 20469846 (+)
lat LOC107567139,LOC107755157 coding downstream 142 20541330 ~ 20548973 (+)
LOC122341935 LOC107687002 coding downstream 33085 20574273 ~ 20577034 (+)
pitpnbl pitpnbl,LOC107754658,LOC107739385,LOC107552474,LOC107567088,LOC107689074,LOC107660806,LOC108410611,LOC103031125 coding downstream 36592 20577780 ~ 20584896 (+)
sez6l2 LOC107660756,LOC107567075,LOC107754673,LOC107739383,LOC107689077 coding downstream 62426 20603614 ~ 20616947 (+)
kctd13 kctd13,LOC107739382,LOC107660789,LOC107552471,LOC107755045,LOC107567055 coding downstream 76078 20617266 ~ 20622534 (+)
G21687 NA non-coding upstream 10013 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 119724 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 134150 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 182695 20339891 ~ 20345356 (+)
LOC122337901 NA non-coding downstream 179385 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 182270 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 196789 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 229469 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 229936 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 332330 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 414553 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 458798 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1124875 19399408 ~ 19403176 (+)
G21213 NA other upstream 1235710 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 341010 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 754514 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1096555 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1434064 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1435321 21976509 ~ 22025911 (+)

Expression


Co-expression Network