LOC122341349 (LOC107725047,LOC107590786,LOC107678868,LOC107710878,LOC107684649,LOC107582907,LOC107725048,LOC107684648)



Basic Information


Item Value
gene id LOC122341349
gene name LOC107725047,LOC107590786,LOC107678868,LOC107710878,LOC107684649,LOC107582907,LOC107725048,LOC107684648
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21429682 ~ 21437955 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043234698.1
atgagtcaGACACTCATGGTGGTTGGGACAGAGAACGCTTGATAAACACAGCAGCACCTGCTTTACATCTCATTAGAGACAGAGAGCAGAAAAAACAACCGAAGATCACAGAATAGAGCAAGAGTATGAAGTTAATTACAGCTTTGAGTGCTGCTGGAACCATACTTCTCAACATAGCAGGAACTCTCTGCCAGCTAGATGTGTGTGGTCAAGCCCCCCTAAACACCAAAATTGTTGGAGGGGAAGATGCAACGGCAGGGTCTTGGCCGTGGCAAGTCAGCATTCAAAGCCCTGTATATGGAGGCCATTTCTGTGGAGGCAGTCTAATCAACAAAGACTGGGTTTTGTCTGCAGCTCACTGCTTCCAGACTCCCTTGAGTACCATTCGGATCTACCTGGGACGCCAGAGCCAGTCGGGATCAAACCCTAATGAAGTTCTCAGGACAGCAAGGACAGTTGTCAACCATCCTGACTATTCCGATTCTACACACGACAACGACCTAGCACTACTTCAGCTCTCTTCTTCTGTGACCTTCTCTGATTACATTAGGCCGATCTGTCTGGCGGCTGCTGGGAGTAAATTCGCCGCAGGTACAAACACCTGGGTCACCGGCTGGGGAGCACTACAGTCAGGAGGTTCGGCTCCTGACATACTGCAGGAGGTGTTGATCCCGGTTGTGAGCAACAGTGACTGTAATAATGCTTACGGAGGGGCCATCACTAACAATATGATGTGTGCCGGACTGTTGAATCAGGGAGGAAAAGATTCATGTCAGGGCGACTCTGGAGGTCCGTTGGTGATTAGAAACAGCTCTCTGTGGATTCAGCCCGGTGTTGTGAGTTTTGGTATTGGATGTGCTGACCCCAAATATCCTGGTGTGTACGCCAGAGTCTCTCAGTACCAGGACTGGATCACCTCTACCATAGGCAGCAACCCTCCTGGATTTGTTCAATTCAACAACAACGGGTTCAGAAGCTCACCCAACCtccttttatttttggtttctctCACTTCCTCCATCATTCCTTTCATATTCTCCCTATATCTCTCTACATgcTCACTTTGTCAGTTAAATGTGTGCGGTCAGGCTCCTCTCAATACAAAGATTGTCGGAGGACAAGCTGCAGTTCAGGGGTCTTGGCCCTGGCAAGCAAGCCTTCATAGAATTACGACAGGAAGTCACTTCTGTGGTGGGAGTCTAATCAATAAAGACTGGGTTCTGTCTGCTGCTCACTGCTTCCAGAGTACCGCCTCATCTAATGTAAAAATCTACCTGGGCCGTCAACTCCAATCAGGCTCGAACCCGAATGAGATCTCCAGGACAGTGATTCAGCTCATCATCCATCCCAGCTATAGCACAGCTTCTCAAAACAACGACATAGCGCTGCTGCAGCTCTCTTCTTCTGTGACGTTCACTGACTACATTAAGCCGGTTTGTCTGGCGGGCGGGAGTGTATTAGGTGGAGGTACTAAGAGTTGGATCACCGGATGGGGCAAACTCAATTCTGCAGACACCCAGATTCCAAACATACTGCAGGAAGTGCAGATACCAATCGTAAGCAACAGTGTTTGTAATAACGATTATGGAGGAATCATTACAAGCAACATGGTATGCGCTGGACTCAGTGAAGGGGGAAAAGATTCATGTCAGGGAGACTCTGGAGGTCCAATGGTAAATAAGAACAATTCTCAGTGGATTCAGTCTGGCATTGTGAGTTTTGGTCGAGACTGTGGACTACCCAATTACCCTGGTGTTTACACCAGAGTGTCTCAATACCAGTCTTGGATCAGCTCCCAAATAAGCAGCAATCTACCAGGATTCGTCTCTTTCACCTCCAATGATTCCAGCTCAGGCTCACCCAGTCTCCTCTTATTTTCACTTTCTCTCACATCCACCATCATTCCTCTGATTTTCtccttatttgtattttcttaatGACCAGGTCATTAAAAGCCCTACACAGGCTATTgttcacacatttaaataagatgaaaaaatacaaatgcactACAGTcactttgtattttaatttattaaaacaggtACAATAAAAGAGTACAGTACTTGTACTATCTAATA

Function


NR:

description
PREDICTED: trypsin-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043234698.1 True 2081 mRNA 0.47 12 21429682 21437955

Neighbor


gene id symbol gene type direction distance location
LOC122337825 LOC107590788,LOC107684637,LOC107710882,LOC107678872 coding upstream 26564 21389147 ~ 21403118 (+)
LOC122337169 LOC107731852,LOC107571197 coding upstream 63528 21363439 ~ 21366154 (+)
LOC122341347 NA coding upstream 66568 21354367 ~ 21363114 (+)
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding upstream 86434 21330328 ~ 21343248 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding upstream 100126 21316273 ~ 21329556 (+)
LOC122340007 LOC107710878,LOC107678868,LOC107725047,LOC107590786,LOC107582907,LOC107684649 coding downstream 3967 21441922 ~ 21444741 (+)
LOC122341350 LOC107738996 coding downstream 9216 21447171 ~ 21450709 (+)
cdc27 cdc27,LOC107740649,LOC107754304 coding downstream 345501 21783456 ~ 21795403 (+)
kansl1b LOC107740647,LOC107662409,LOC107754301,LOC107694965 coding downstream 359065 21797020 ~ 21842872 (+)
scn4ab scn4ab,LOC107754300,LOC107683681,LOC107582874 coding downstream 461351 21899306 ~ 21918705 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding upstream 46558 21381808 ~ 21383124 (+)
G22046 zwi non-coding upstream 86413 21247604 ~ 21343269 (+)
G22197 NA non-coding downstream 197789 21635744 ~ 21636079 (+)
G22198 NA non-coding downstream 198168 21636123 ~ 21636570 (+)
G22201 NA non-coding downstream 296183 21734138 ~ 21734422 (+)
LOC122341843 NA non-coding downstream 597927 22035882 ~ 22089931 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 1073473 22511428 ~ 22672911 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other upstream 15396 21295702 ~ 21414286 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 473108 20882198 ~ 20956574 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 1233961 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 1316184 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 1360429 20064270 ~ 20069253 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 199788 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 537297 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 538554 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 831031 22268986 ~ 22336227 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 1091034 22528989 ~ 22530060 (+)

Expression



Co-expression Network