LOC122341374


Basic Information

Item Value
gene id LOC122341374
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24852381 ~ 24855237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234713.1
GTGGCGGCGTAGCTAAATGACAGTTAAAACAGTTAAACGCGAAATACTCACGATACGCGTTTGTTTTACCGAAGACTTCGCTATCTTCAATAAAGAAGAAATGCGTGCTCTTTAGTGAGGCGCGCGTGTGTTAGTGAGCCTGCCGTGATTTAAAGTGAGCGACTATGGAGAAAAAACAGCCAGAAAAAAGTCGTCCTGATGTGGGGATGCTTCGTCCCTACCGTCCAGGCTTGCCAAGCCAGGGTCACAGAGACGAACTTCCCCAGTTAAATACCGTCCCGTCTCTCATTAGTAGACCAGGCACAAATCGGCAACAGaaaGATAACCATCCATCTGTATCTAAGATCATTCATCCTAGAggacatcacagaaacaaaatgACCACTTTGCCCTGCATTTTCTCAAATCTCTCATATGCTGAAGACCCGGTGGGCACAAGATTACTGGGCCAGGAAGGAAACAAGTCCCTCTTTCTTAAACAATCTGTGTTAAGAATGCTTCCTGTCCCACCCAGTGCTATGGAGGAGCAGTTGCATGAAATCCAGCATGAGACAGACTTCCACCCTGGAAGTTACTGTCCAAAAGTTCAGATGCCTTATGTTTGCCCTCCAGGACATGTGCCTCGGAAGATTGAGATTGAGAGTATGGAAACTCTTCTGTGTATGAAATGCTTCTGGGCAACTGAACTCCAACGTAAGCCAATAGAATTGGTGTTTACACACATGCTTCAGACACCTTTCACACAGAAGCGTTTCCATAGTGACAGTGCCATGAAGCAGTGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234713.1 True 785 mRNA 0.46 6 24852381 24855237

Neighbor

gene id symbol gene type direction distance location
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding upstream 18425 24831425 ~ 24833956 (+)
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding upstream 23942 24815873 ~ 24828439 (+)
il12rb2l LOC107758123 coding upstream 70771 24771291 ~ 24781610 (+)
LOC122342023 rln3a,LOC107658697,LOC107758104,LOC107559241,LOC107568237,LOC107696003 coding upstream 83110 24767629 ~ 24769271 (+)
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding upstream 234140 24614599 ~ 24618241 (+)
LOC122342014 smarca4a,smarca4,LOC107658703,LOC107758124 coding downstream 139018 24994255 ~ 25009566 (+)
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding downstream 250944 25106181 ~ 25162861 (+)
gaa gaa,LOC107559225 coding downstream 422555 25277792 ~ 25286925 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 coding downstream 432517 25287754 ~ 25308434 (+)
cbx4 cbx4,LOC107758118,LOC107559247,LOC107690020,LOC107670662,LOC107728779,LOC107562304 coding downstream 472483 25327720 ~ 25333865 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 178669 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding upstream 201677 24640580 ~ 24650704 (+)
G23011 NA non-coding upstream 239630 24612526 ~ 24612751 (+)
G23004 NA non-coding upstream 288486 24563246 ~ 24563895 (+)
G23005 NA non-coding upstream 289254 24562812 ~ 24563127 (+)
G23031 NA non-coding downstream 102074 24957311 ~ 25267157 (+)
G23044 NA non-coding downstream 224455 25079692 ~ 25087970 (+)
G23077 NA non-coding downstream 523991 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 537281 25392518 ~ 25394254 (+)
G23095 NA non-coding downstream 563433 25418670 ~ 25419775 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 40804 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 321612 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 403092 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 412918 24434055 ~ 24439463 (+)
G22958 NA other upstream 755222 24095024 ~ 24097159 (+)
LOC122342019 LOC107758123 other downstream 128044 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 491547 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 556681 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 669072 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 718520 25573757 ~ 25577043 (+)

Expression


Co-expression Network