LOC122341391 (LOC107758342)


Basic Information

Item Value
gene id LOC122341391
gene name LOC107758342
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28316600 ~ 28319709 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234723.1
GTTTGCATATTACAAAGCTCAGGTGATAAGGAGGAGCGACAAAGTACGACTACAGACTAAAGTGACACTAAAGAGCAGGCAGAAGAGAGTTTCtgATTCTGAAAGGAGAATGTCCCACACAGTCTTACCCGTGAACTCCTCAACACTCATCATCCAGATTCAACCACCGACACAAACAGCACCAGCCGGGACTGTGACCAATGCTCCTGTGCCTATTTATGAACAAGTAACAGGAGTTTCTCCTCTTCGTGGACTTCAGGCATTTCTGAAAGGCCAACCGAAAGCCCTTGGGACCGTCCAGATAATGATTGGTATATTGACTTTCCTGCTTGGGATCGTGTCTACAATTCATGCAGAATCCATATCTGTCTTTAGTGGTGTTCCATACTGGGGATCAATCATCTACATCATTGCAGGTTCACTCAGCATTGCTGCCGAAAACAAACTTAATTCGCCCTCCGGTTTGCGTTTGGTGAAAGGTTTACTTGGAATGAACATTTTCAGTGCTTTAAGTGCAGTCACTGCCGTTATTATAATTTCAATTGATTTGGCTCTAGGACCAATGCACATAAGTCACTGCAGATATGACTGTTATGATTTGGAGGAAAGGTATATGGCCTTCTTCTCGGGAATCGGTAGTGTTTTGCTGATATTTGCCTTGCTTGAGTTTATCATCTCCATCTATTTGTCATCATTTGCCTGTAAAGTAACCTGCTGCTGTTCTCCACAGGAGTTGAATGTTCCAGAAGTTCTACCTCGAATGCCT

Function

NR:

description
PREDICTED: membrane-spanning 4-domains subfamily A member 15-like

GO: NA

KEGG:

id description
K22190 MS4A3S; membrane-spanning 4-domains subfamily A member 3/4/8/12/15/18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234723.1 True 766 mRNA 0.44 7 28316600 28319709

Neighbor

gene id symbol gene type direction distance location
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding upstream 244023 27574258 ~ 28072577 (+)
LOC122334736 LOC107702828 coding upstream 248501 28036420 ~ 28068099 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding upstream 364143 27951751 ~ 27952457 (+)
LOC122335347 LOC107569407,LOC107688685,LOC107571108 coding upstream 586708 27728274 ~ 27729892 (+)
LOC122334614 LOC107562032 coding upstream 760070 27533844 ~ 27556530 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding downstream 333384 28653093 ~ 28658489 (+)
LOC122341396 NA coding downstream 391994 28711703 ~ 28714513 (+)
LOC122341397 LOC107556593 coding downstream 400838 28720547 ~ 28721944 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 416290 28735999 ~ 28737619 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding downstream 465823 28785532 ~ 28789067 (+)
G23953 NA non-coding upstream 81064 28227075 ~ 28235536 (+)
LOC122335654 NA non-coding upstream 280442 28034400 ~ 28036158 (+)
G23931 NA non-coding upstream 371384 27942182 ~ 27945216 (+)
G23924 NA non-coding upstream 510267 27804611 ~ 27806333 (+)
G23878 NA non-coding upstream 516371 27734542 ~ 27800229 (+)
LOC122335640 NA non-coding downstream 1 28319710 ~ 28320156 (+)
G23964 NA non-coding downstream 8756 28328465 ~ 28329411 (+)
LOC122335662 NA non-coding downstream 74032 28393741 ~ 28394538 (+)
G24132 NA non-coding downstream 384321 28704030 ~ 28705144 (+)
G24138 NA non-coding downstream 389071 28708780 ~ 28715865 (+)
LOC122335546 NA other upstream 1034194 27281827 ~ 27282406 (+)
G23695 NA other upstream 1469243 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 1515199 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 1543697 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 1610869 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 195934 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 273095 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 387322 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 478605 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 524105 28843814 ~ 28846375 (+)

Expression


Co-expression Network