LOC122341396


Basic Information

Item Value
gene id LOC122341396
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28711703 ~ 28714513 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234728.1
ATGGGTGGGGTAGAAGTTCCTTGCTTATTGGACACCGGGTCCATGGTGACCACTATTTCAGAGGGGttcttttttgaacattttgagcCTTGGGGTAGAGAGAAGCTGCATAGTTGTGGTTGGCTACAGTTACGTGCTGCAAATGGCCTGGATATCCCGTATTTGGGTTATTTGGAGTTAGATTTTGTCGTCCTTGGGAAGAAAATCCAGAGTAAGGGAGTACTGGTGGTGAAAGATCTGTCCCAGTCTTCGTTACCGGGTGGGTTTCCTGGGTTGCTAGGTATGAACGTCATCCAGGAGTGTTTTAGGGAGTTGTTTAGTCAACATGGGCCCAGTCTCTTTGATCTTCCCACAGTGCGGGAGACTCCTGCATGGTATTCTGCCTTGCAGTATTGTAAGAAGACAGAAACTGACGTTTATGAGACGACTGAACGGTTAGCTAGGATTGGGGGTCGAGAAACCGTGCGAATCCCGGCAGATTCATTGCGTTTTGTGCCGGTTACTTTCTCCTTACCAACAGGCCCCCCACCTGTGTTGCTGTTTGAGCCTCTGGGGGGGGAGAATTCGCTTCCAGCTGGTCTTCTGGCCTCTGTATCTCTGGTACCACTTGTTAGAGGGGTGGCCTATGTACCCATAGTTAATGTGGGGAAAAGATTTCTGCTTCAGCCACATGTTGTGGTGGGGACATTGTGTACGGTCCAGACTGTTCCTCGGCAGGATGTTGTCATGGCACCATCAGGGCAACAGGTATATATTCAAGCCACTGTTGCATTGCAGACAGAGAAAGGGGATAGAGTGGAGGAGGCAATTCATACTATGGATCTGCCTCAGCTGACTTTGGACAAACAGGCTCAGGTGAAGTCCCTGTTGCTGATCCAATACGGCAGAGGTATCGACGATTACCCCCTTCCGATTATGAGGCAGTTAAAGAGCATATTCACCAACTGTTGCAGAATCAGTGGTAAGGAGAGCTCTAGTCCGCACGCCTCTCCAATTGTAGGTGAAAAGAAAGATGGGCAGATTCGTCTTTGTGTTGATTATAGGCAGTTGAATGGTAAGACACGGAAGGACGCGTTTCCCCTGCCCCGGATTGAGGAGTCACTGGATGCTATGTGTGGAGCCCAGTGGTTTTCCACTTTGGATCTTGCCAGTGGCTACAATCAGGTTCCGGTGGCAGAGGGAGATAAATGTAAGACCGCGTTCTGCACACCCTTTGGGTTATTTGAGTTTAATCGAATGCCCTTTGGGTTGTGCAATGCCCCTAGTACATTTCAACGCCTTATGGAGCGCATGTTTGGGGATCAAAGGTTTCAGACGTTGTTGCTCTATTTAGATGATATTATCATCTTTTCGTCCACCATTGCACAACATTTGGAGAGGCTGGAAATGGTTTTTGTCCGATTGCAACAGGAGGGGCTGAAggcaaaattagaaaaatgttgtttttttcgaCAAGAAGTAAGCTACTTGGGGCATGTAGTGTCTAAGGAGGGGGTGTCTActgacccagccaagatcagtgTGGTGGCAGAGTGGAAGCGTCCAACCAATGTGGCAGAACTGCGGTCTTTCTTGGGATTTACTAGTTATTATAGACGTTTTGTAGAAGGATTTGCACGACTAGCCGCACCATTGCATCGTCTTGTTGCAGACTTAGTAGGGACAAAGAAGAAAAGGGGTTCTGGGAAGTCGATTGAGAGCTGTTGGACGGAGGAGTGTGAGCAAGGGTTTCAAGATTTGAAACGCCGTTTGGTGACTGCTCCTGTATTGACGTACGCAGATTTTTCTCTCCCATTTGTAGTGGAAATCGATGCTAGCCATGCCGGACTAGGGGCTGTGCTTAGTCAAGAGAAGGATGGCAGGCTGAGGCCAGTGGCATATGCTAGCCGGGGGCTTCGACCCACAGAAAGAAATATGCAAAATTATAGCTCCATGAAATTGGAGTTATTAGCTTTGAAATGGGCTCTAACTGAAAAGTTTAGGGACTATCTTTTGGGACAGAAGTGTGTGGTGTACACAGATAACAACCCCTTGAGCTATTTGAAGACTGCCAGGCTTGGTGCTGTAGAGCAGCGCTGGGCTTCCCAGTTGGCAGCATTTGATTTTGACATTCGATATCGCCCCGGCCGTGCTAACGGTAATGCGGATGCTCTGTCTAGGCAGTACACAGTGGTTCCTTCTCCACCGCAAGATAGTGGTACTGCTCTGCCTGCAATGTTGGTTGAATTGTTGGACAGGGAGAGGCCAATGGGGGTTGCCCagaacatcatttctgctcttcCTACCACTTCAAAGGTAGATTTACGACAGGCACAGGAGCAGGATCCAGTTATTGGTTCAGTGCTTGATTGTTTTTCCTCCAAAGTGTATCCAACTAAGGAACAGCGTCAGGCTATGTCTAAAAGGAGTTTGGAATTGCTTCGTCAGTGGAGCCGGTTGATTGAGAGAGGTGGGTTATTATATCGTCAAATTAAACTACCTGATGGGGAAGATGTGGATCAGTTGGTGTTGCCTGGGGTTTTGCAGGAGAGGTTTTTCAGCAGTTGCATGACCTTCATGGTCACCAAGGCAGGGAACGTACCTATGAGCTTATACGCAGTCGATGTTATTGGCCTGGGATGGAGGCTGATGTTCGGAAGAGATGTCAAGACTGTAGTCAGTGTGCTGTTGCGAAATCGAATCGCCGCCGACCCGTGCTCCTATGGGCCATTTGTTGGCATTTAG

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005811 lipid droplet cellular_component

KEGG:

id description
ko04979 Cholesterol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234728.1 True 2724 mRNA 0.48 3 28711703 28714513

Neighbor

gene id symbol gene type direction distance location
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding upstream 53214 28653093 ~ 28658489 (+)
LOC122341391 LOC107758342 coding upstream 391994 28316600 ~ 28319709 (+)
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding upstream 639126 27574258 ~ 28072577 (+)
LOC122341397 LOC107556593 coding downstream 6034 28720547 ~ 28721944 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 21486 28735999 ~ 28737619 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding downstream 71019 28785532 ~ 28789067 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding downstream 78539 28793052 ~ 28797759 (+)
amn amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 102065 28816578 ~ 28818102 (+)
G24132 NA non-coding upstream 6559 28704030 ~ 28705144 (+)
LOC122335662 NA non-coding upstream 317165 28393741 ~ 28394538 (+)
G23964 NA non-coding upstream 382292 28328465 ~ 28329411 (+)
LOC122335640 NA non-coding upstream 391547 28319710 ~ 28320156 (+)
G23953 NA non-coding upstream 476167 28227075 ~ 28235536 (+)
LOC122335688 NA non-coding downstream 3519 28718032 ~ 28719109 (+)
G24146 NA non-coding downstream 43182 28757695 ~ 28831744 (+)
G24169 NA non-coding downstream 140450 28854963 ~ 28855171 (+)
G24170 NA non-coding downstream 144372 28858885 ~ 28859136 (+)
G24172 NA non-coding downstream 147760 28862273 ~ 28862502 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 3095 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 61053 28592804 ~ 28650650 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other upstream 151379 28515643 ~ 28560324 (+)
LOC122335546 NA other upstream 1429297 27281827 ~ 27282406 (+)
G23695 NA other upstream 1864346 26846723 ~ 26847357 (+)
LOC122341400 NA other downstream 83801 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 129301 28843814 ~ 28846375 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other downstream 154566 28869079 ~ 28933084 (+)
LOC122341401 NA other downstream 333765 29048278 ~ 29054414 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 346262 29060775 ~ 29073755 (+)

Expression


Co-expression Network