LOC122341397 (LOC107556593)


Basic Information

Item Value
gene id LOC122341397
gene name LOC107556593
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28720547 ~ 28721944 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234729.1
ATGAGTGGCAGCAATCAGAGTGGAGAGTGGCTGACCCAGAGcgtgaaaataaaacaagattcAAGCTCTCAAGACCACAAATTTCTCTCGGTCACTTTATCGATCAATCCGTTCAGTGCTGTTGTGACCCTGATCCTGCCCAGCGCATTAATAATGCTGGCTGACCTGGTGAGCTTTGCTCTGCCAGTTCAAGGAGGCGAACGCAACAACCTTAAGGTCACCTTGGTCCTGAGCTTTACCATGTTCCTAATCATCCTCAATGATCACCTGTCCAGTGGCACAAGCTGTAGCCCTCTCCTCCATTACCACTTCTGCTTCTGTCTGGTCAGTCTGGTGCTGAGCATGGTGACATCGATGGTCTTGACACGTTTGACATCAGACGACAGCATTCTGCCTTGTAAATGCTCAAAGATCATCAAAACACAAAACGCCAATCTGGGCCAGCGCAAAGCGGACGCTGACGTGATTGCAACAACAACCACCGATTTGGCTTCAGAGGCGGCTTCCTCCAAAAAAATTGCGCAATATTTTGAGCATATGGATCAAAAGGAACAAGCGTAA

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234729.1 True 561 mRNA 0.48 4 28720547 28721944

Neighbor

gene id symbol gene type direction distance location
LOC122341396 NA coding upstream 6034 28711703 ~ 28714513 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding upstream 62058 28653093 ~ 28658489 (+)
LOC122341391 LOC107758342 coding upstream 400838 28316600 ~ 28319709 (+)
LOC122334736 LOC107702828 coding upstream 652448 28036420 ~ 28068099 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding upstream 768090 27951751 ~ 27952457 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 14055 28735999 ~ 28737619 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding downstream 63588 28785532 ~ 28789067 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding downstream 71108 28793052 ~ 28797759 (+)
amn amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 94634 28816578 ~ 28818102 (+)
otop2 otop2,LOC107710699,LOC107698768,LOC107556602,LOC107729200,LOC107664425 coding downstream 104669 28826613 ~ 28830736 (+)
LOC122335688 NA non-coding upstream 1438 28718032 ~ 28719109 (+)
G24139 NA non-coding upstream 4354 28709906 ~ 28716193 (+)
G24138 NA non-coding upstream 4682 28708780 ~ 28715865 (+)
G24132 NA non-coding upstream 15403 28704030 ~ 28705144 (+)
LOC122335662 NA non-coding upstream 326009 28393741 ~ 28394538 (+)
G24146 NA non-coding downstream 35751 28757695 ~ 28831744 (+)
G24169 NA non-coding downstream 133019 28854963 ~ 28855171 (+)
G24170 NA non-coding downstream 136941 28858885 ~ 28859136 (+)
G24172 NA non-coding downstream 140329 28862273 ~ 28862502 (+)
G24174 NA non-coding downstream 142700 28864644 ~ 28864859 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 11939 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 69897 28592804 ~ 28650650 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other upstream 160223 28515643 ~ 28560324 (+)
LOC122335546 NA other upstream 1438141 27281827 ~ 27282406 (+)
G23695 NA other upstream 1873190 26846723 ~ 26847357 (+)
LOC122341400 NA other downstream 76370 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 121870 28843814 ~ 28846375 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other downstream 147135 28869079 ~ 28933084 (+)
LOC122341401 NA other downstream 326334 29048278 ~ 29054414 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 338831 29060775 ~ 29073755 (+)

Expression


Co-expression Network