carm1 (carm1,LOC107698604,LOC107689626,LOC107753277,LOC107724424)


Basic Information

Item Value
gene id carm1
gene name carm1,LOC107698604,LOC107689626,LOC107753277,LOC107724424
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13116031 ~ 13129608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234771.1
CGCGAGATGTGGCCATGTGGAGGCAGTAGTAAGTCAGGCCTAGCTTGACCACTGACTGCAGGGGAGATCTGAGCCGCTGAGCTGCTGTCTGACTCTGCCCAGATCGAAGATGGCGGTGTCGGTGTTCTCAGGCGTGCGCCTCCTCTCCATCGGAGACGCCAACGGAGACATACAGCGGCATTCAGAGCAGCAGCCTCTGCGGCTAGAAATCAAAATCAACCAGGACGTGGCTCTCATAAGCCTCTCGAACAATGAGGAAACGTGTGTCTTCAAGTGTTCAGTATCACGAGAGACCGAATGCAGTCGTGTTGGGAAGCAGTCCTTCATCATTACTCTGGGCTGTAACAGTGTCCTTCTGCAGTTTGCATCTCCAGCAGATTTCTCGTCGTTCTATAACCTCCTGAAGAATTGCCGTGGACATGGGGGTGAACACTCTGTCTTCAGTGAGAGGACGGAGGAGTCCTCAGCTGTACAGTATTTTCAgTTTTATGGCTACCTCTCTCAGCAACAAAACATGATGCAGGATTACGTGCGAACTGGAACATATCAACGGGCCATCCTCCAGAATCATACTGACTTCAAGGATAAAGTGGTGCTGGATGTTGGCTGTGGCTCTGGGATTCTGTCATTTTTCGCAGCTCAGGCTGGTGCTCGTAAAGTGTATGCTGTGGAGGCCAGCACCATGGCTCAACATGCAGAGGTTCTCGTAAATAGTAACAGGCTCTCAGAGCGTGTTGTGGTGATTCCTGGGAAAGTAGAGGAAGTGTCCCTACCCGAGCAGGTGGACATAATCATCTCTGAACCCATGGGCTATATGCTGTTCAACGAAAGGATGCTGGAGAGCTACCTGCATGCCAAAAAATTCCTCAAGCCCAACGGCAAAATGTTTCCCACAATCGGAGATGTGCACCTCGCCCCTTTCACAGATGAGCAGCTTTACATGGAGCAGTTTACAAAGGCCAATTTCTGGTACCAGCCGTCTTTCCATGGGGTGGATCTGTCTGCGCTGAGAGGAGCCGCAGTAGACGAATACTTCAGACAGCCGATTGTGgaCACGTTCGATATCAGGATCCTGATGGCCAAATCGGTGAAATATACAGTCAACTTTTTAGAAGCTAAAGAAGAGGATCTTTACAAGATAGAAATCCCTTTCAAATTCCACATGATGCATTCAGGGCTTGTACATGGGCTAGCTTTTTGGTTTGATGTCGCATTCATTGGATCAGTGATGACGGTGTGGCTATCCACGGCCCCCACAGAACCCCTCACCCACTGGTACCAGGTGCGCTGTCTGCTGCAGTCTCCCCTCTTTGCCAAGGCAGGGGACACGATGTCAGGCACTGCACTTTTAATCGCCAACAAGAGACAAAGCTATGACATTAGTATTGTTGCTCAAGTGGACCAGACAGGCTCCAAGTCCAGCAATCTACTTGACCTCAAGAACCCCTTCTTCCGGTACACGGGCACGACACCGGCCCCTCCTCCAGGCTCACACTATTCTTCTCCGTCAGAGAACATGTGGAACACTGGAGGAACCTACAGCATGAGCCAGGGCATGTCTGTGTCAGGGATGCCTGCAGCCTATGATCTCAGTACTGTCATTGGTGGCAGTGGGACTACGGTGTCCCACAACAATCTCATCCCCATTGGTACAGACACGCATGCACTGAACACAGGGATTGTGAATCACACTCACTCCAGAATGGGTTCTATAATGAGCACCGGAATCGTCCAGGGGGCCACAACTGCCCAGCAGGGTCCCAGCAGCAGCAGTCCCTATTACCCCGTCACCAACCAGTTCACCATGGGCGGCCCGGCTATCTCCATGGCATCCCCTATGGCCATCCCCAGCAACACCATGCACTACGGGAGCTAAGGCCAAAGGACGGCCTTTGCATGTCCAGTTACCCCCTCCCTCCTCTAACCACCCTACCCCCCCACCCCCAGCCCCTGCAAACTGACCGCAGCCAAATTCAGAATACCAAAACCAATGCACCAGTCTCTGACCATCACTTTATAgcctctctctctatatataaatatacatgtatacgtatgtatatatatattctaaactGTTTCTCTCACTGGTGTTTTATTCTTACATATCCGTCCCGCGACCCAATAGCGTTAACATGTGCAGGCATTCGGCCGGTTCAACACGCCTGAGGTGTATCATTGTTAACCCTCACCCCCCCTTTCCCACCTCAATCACAGCGCCTGCTCCACAACCAGCCACTGGGAGGCAGCACTTGTCTGTAAGCATGCTGAAAAAGCACAAACCAGAGACTCAATGAAAAGGACTCTTTCGGAAGAACGCTGACAacgggactttttttttttttttttttataaatgctttacaaATGTGCACATGTTTGCCCTTACTTTATGAACTcccacttctttcttttttttttttttttagccacatAAATGCCATCATTGACTATTGATATGAATTGGAGATCTATTGCAGGATCTTTCCACTGTTCCTAACAGCTCCGACtctgttaaacttttttttttttttttttcgttttcgGTGAGATCGACCGGCTGTCGCATCTCCATTCTCTCAGCATGGGCTTCTGCCGGGCCATCTCCATGTTCACAAACCTCTCATCGCTGGCCAGAAGAAACGGACACATGCTCACAAAGCTCATCACGACTACTAGCGCAGCGCCGCTGGATCCTGCCTGTAGACAACCATAGTGTAGATAGAGATCGTCTTACTTTCATTCCAGTgactgtgtgttttaatgtagtGCAGTCCCAGATTTATGTGTCGCTTGGTGTTCTCTGAGGTGAATTCTGAGCATGGATTATCCAGACTGCTTCTGTCGGCCTCCGACTCCATATCGGCGCTGATCTGACTTGTAAATTTGGAGGATTCATTGTTAGTCAATTATAAGGACACAGAGGTTTTAGGAATAAGAATATCAGCACCAAAACCCTCCTTTATCAGGCAAGGAGGACGGCGGAGTGCTGGGAAGGACAGTCTGCACTGGGGGGAGGAAGACCGATGGATGAACGACATAAACAGTGAGGTCCGCACTGGACACGCACTGACCACTGCAGCAGGAATTGCAGTATCCTAGTTTACACCCCCCTCCAGAACCCTTATCTTGTCAAGTTCTGTGTTTTGAGACCTGTTGAGGAAAGGAGGAGATCAAGTGATGCCAGACTAGCTATAATTTTcctcccccctctctctctctctctctctctctctctctcctcctctccttcaCCGGGGATATGATAATAGCCCCATCAAAGACTATGAAGTCGTATGCACCGCTTCCAGTCACCTTTTTTCTTCGGTTAATTCAGTTTGATTTAGCAACGATCATGAGATGAAAACAACCATGTCTGCTAGTTTGtagaattaacttttttttttttttttttttcacaaaaaaaagcaacagacaaaaaaaaggagCAAATTAAATGTTGATGGAGAAGTCCCTAA
>XM_043234772.1
AACGCGAGATGTGGCCATGTGGAGGCAGTAGTAAGTCAGGCCTAGCTTGACCACTGACTGCAGGGGAGATCTGAGCCGCTGAGCTGCTGTCTGACTCTGCCCAGATCGAAGATGGCGGTGTCGGTGTTCTCAGGCGTGCGCCTCCTCTCCATCGGAGACGCCAACGGAGACATACAGCGGCATTCAGAGCAGCAGCCTCTGCGGCTAGAAATCAAAATCAACCAGGACGTGGCTCTCATAAGCCTCTCGAACAATGAGGAAACGTGTGTCTTCAAGTGTTCAGTATCACGAGAGACCGAATGCAGTCGTGTTGGGAAGCAGTCCTTCATCATTACTCTGGGCTGTAACAGTGTCCTTCTGCAGTTTGCATCTCCAGCAGATTTCTCGTCGTTCTATAACCTCCTGAAGAATTGCCGTGGACATGGGGGTGAACACTCTGTCTTCAGTGAGAGGACGGAGGAGTCCTCAGCTGTACAGTATTTTCAgTTTTATGGCTACCTCTCTCAGCAACAAAACATGATGCAGGATTACGTGCGAACTGGAACATATCAACGGGCCATCCTCCAGAATCATACTGACTTCAAGGATAAAGTGGTGCTGGATGTTGGCTGTGGCTCTGGGATTCTGTCATTTTTCGCAGCTCAGGCTGGTGCTCGTAAAGTGTATGCTGTGGAGGCCAGCACCATGGCTCAACATGCAGAGGTTCTCGTAAATAGTAACAGGCTCTCAGAGCGTGTTGTGGTGATTCCTGGGAAAGTAGAGGAAGTGTCCCTACCCGAGCAGGTGGACATAATCATCTCTGAACCCATGGGCTATATGCTGTTCAACGAAAGGATGCTGGAGAGCTACCTGCATGCCAAAAAATTCCTCAAGCCCAACGGCAAAATGTTTCCCACAATCGGAGATGTGCACCTCGCCCCTTTCACAGATGAGCAGCTTTACATGGAGCAGTTTACAAAGGCCAATTTCTGGTACCAGCCGTCTTTCCATGGGGTGGATCTGTCTGCGCTGAGAGGAGCCGCAGTAGACGAATACTTCAGACAGCCGATTGTGgaCACGTTCGATATCAGGATCCTGATGGCCAAATCGGTGAAATATACAGTCAACTTTTTAGAAGCTAAAGAAGAGGATCTTTACAAGATAGAAATCCCTTTCAAATTCCACATGATGCATTCAGGGCTTGTACATGGGCTAGCTTTTTGGTTTGATGTCGCATTCATTGGATCAGTGATGACGGTGTGGCTATCCACGGCCCCCACAGAACCCCTCACCCACTGGTACCAGGTGCGCTGTCTGCTGCAGTCTCCCCTCTTTGCCAAGGCAGGGGACACGATGTCAGGCACTGCACTTTTAATCGCCAACAAGAGACAAAGCTATGACATTAGTATTGTTGCTCAAGTGGACCAGACAGGCTCCAAGTCCAGCAATCTACTTGACCTCAAGAACCCCTTCTTCCGGTACACGGGCACGACACCGGCCCCTCCTCCAGGCTCACACTATTCTTCTCCGTCAGAGAACATGTGGAACACTGGAGGAACCTACAGCATGAGCCAGGGCATGTCTGTGTCAGGGATGCCTGCAGCCTATGATCTCAGTACTGTCATTGGTGGCAGTGGGACTACGGTGTCCCACAACAATCTCATCCCCATTGTGAACACAGGGATTGTGAATCACACTCACTCCAGAATGGGTTCTATAATGAGCACCGGAATCGTCCAGGGGGCCACAACTGCCCAGCAGGGTCCCAGCAGCAGCAGTCCCTATTACCCCGTCACCAACCAGTTCACCATGGGCGGCCCGGCTATCTCCATGGCATCCCCTATGGCCATCCCCAGCAACACCATGCACTACGGGAGCTAAGGCCAAAGGACGGCCTTTGCATGTCCAGTTACCCCCTCCCTCCTCTAACCACCCTACCCCCCCACCCCCAGCCCCTGCAAACTGACCGCAGCCAAATTCAGAATACCAAAACCAATGCACCAGTCTCTGACCATCACTTTATAgcctctctctctatatataaatatacatgtatacgtatgtatatatatattctaaactGTTTCTCTCACTGGTGTTTTATTCTTACATATCCGTCCCGCGACCCAATAGCGTTAACATGTGCAGGCATTCGGCCGGTTCAACACGCCTGAGGTGTATCATTGTTAACCCTCACCCCCCCTTTCCCACCTCAATCACAGCGCCTGCTCCACAACCAGCCACTGGGAGGCAGCACTTGTCTGTAAGCATGCTGAAAAAGCACAAACCAGAGACTCAATGAAAAGGACTCTTTCGGAAGAACGCTGACAacgggactttttttttttttttttttataaatgctttacaaATGTGCACATGTTTGCCCTTACTTTATGAACTcccacttctttcttttttttttttttttagccacatAAATGCCATCATTGACTATTGATATGAATTGGAGATCTATTGCAGGATCTTTCCACTGTTCCTAACAGCTCCGACtctgttaaacttttttttttttttttttcgttttcgGTGAGATCGACCGGCTGTCGCATCTCCATTCTCTCAGCATGGGCTTCTGCCGGGCCATCTCCATGTTCACAAACCTCTCATCGCTGGCCAGAAGAAACGGACACATGCTCACAAAGCTCATCACGACTACTAGCGCAGCGCCGCTGGATCCTGCCTGTAGACAACCATAGTGTAGATAGAGATCGTCTTACTTTCATTCCAGTgactgtgtgttttaatgtagtGCAGTCCCAGATTTATGTGTCGCTTGGTGTTCTCTGAGGTGAATTCTGAGCATGGATTATCCAGACTGCTTCTGTCGGCCTCCGACTCCATATCGGCGCTGATCTGACTTGTAAATTTGGAGGATTCATTGTTAGTCAATTATAAGGACACAGAGGTTTTAGGAATAAGAATATCAGCACCAAAACCCTCCTTTATCAGGCAAGGAGGACGGCGGAGTGCTGGGAAGGACAGTCTGCACTGGGGGGAGGAAGACCGATGGATGAACGACATAAACAGTGAGGTCCGCACTGGACACGCACTGACCACTGCAGCAGGAATTGCAGTATCCTAGTTTACACCCCCCTCCAGAACCCTTATCTTGTCAAGTTCTGTGTTTTGAGACCTGTTGAGGAAAGGAGGAGATCAAGTGATGCCAGACTAGCTATAATTTTcctcccccctctctctctctctctctctctctctctctcctcctctccttcaCCGGGGATATGATAATAGCCCCATCAAAGACTATGAAGTCGTATGCACCGCTTCCAGTCACCTTTTTTCTTCGGTTAATTCAGTTTGATTTAGCAACGATCATGAGATGAAAACAACCATGTCTGCTAGTTTGtagaattaacttttttttttttttttttttcacaaaaaaaagcaacagacaaaaaaaaggagCAAATTAAATGTTGATGGAGAAGTCCCTAA

Function

symbol description
carm1 Predicted to enable several functions, including lysine-acetylated histone binding activity; nuclear receptor coactivator activity; and protein-arginine N-methyltransferase activity. Acts upstream of or within regulation of skeletal muscle fiber development. Predicted to be located in cytosol and nucleus. Is expressed in nervous system; segmental plate; shield; and somite. Orthologous to human CARM1 (coactivator associated arginine methyltransferase 1).

NR:

description
PREDICTED: histone-arginine methyltransferase CARM1 isoform X3

GO:

id name namespace
GO:0048742 regulation of skeletal muscle fiber development biological_process
GO:0034971 histone H3-R17 methylation biological_process
GO:0033146 regulation of intracellular estrogen receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045600 positive regulation of fat cell differentiation biological_process
GO:0009405 pathogenesis biological_process
GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity molecular_function
GO:0070577 lysine-acetylated histone binding molecular_function
GO:0035642 histone methyltransferase activity (H3-R17 specific) molecular_function

KEGG:

id description
K05931 CARM1, PRMT4; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234771.1 True 3478 mRNA 0.48 16 13116033 13129608
XM_043234772.1 False 3462 mRNA 0.48 16 13116031 13129608

Neighbor

gene id symbol gene type direction distance location
aldh3b1 aldh3b1,LOC107698763,LOC107601228,LOC108444046,LOC108258475 coding upstream 8184 13103276 ~ 13107847 (+)
LOC122332118 alkbh7,LOC107723204,LOC107690706 coding upstream 141404 12972477 ~ 12974627 (+)
LOC122332168 gtf2f1,LOC107737737 coding upstream 215815 12895326 ~ 12900216 (+)
alkbh7 NA coding upstream 343849 12770572 ~ 12772182 (+)
ier2a LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 coding upstream 436274 12678396 ~ 12679757 (+)
timm29 zgc:110046,LOC107736790,LOC107601237,LOC107698646,LOC107753167,LOC107689699,LOC107578239 coding downstream 5062 13134670 ~ 13136750 (+)
slc25a23b slc25a23b,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC107753149,LOC105898533,LOC108444036 coding downstream 24899 13154507 ~ 13162307 (+)
znf207a znf207a,LOC107590415,LOC107698690,LOC107601239,LOC107689623 coding downstream 34388 13163996 ~ 13170254 (+)
dlx4a dlx4a,LOC107709990,LOC107689696,LOC107590410,LOC107753083,LOC107688148 coding downstream 256820 13386428 ~ 13391506 (+)
dusp3b dusp3b,LOC107753093,LOC107688089,LOC107590411,LOC107709997 coding downstream 262365 13391973 ~ 13394963 (+)
G19629 ighv4-5 non-coding upstream 19177 13005810 ~ 13096854 (+)
G19626 NA non-coding upstream 23391 13088254 ~ 13092640 (+)
G19628 LOC107710248 non-coding upstream 33877 13077933 ~ 13082154 (+)
G19624 NA non-coding upstream 39337 13072133 ~ 13076694 (+)
G19636 NA non-coding upstream 43432 13061117 ~ 13072599 (+)
LOC122330830 NA non-coding downstream 10674 13140282 ~ 13152319 (+)
LOC122341519 NA non-coding downstream 42431 13172039 ~ 13173224 (+)
G19722 NA non-coding downstream 96951 13226559 ~ 13227185 (+)
G19757 NA non-coding downstream 214887 13344495 ~ 13351575 (+)
G19756 NA non-coding downstream 226608 13356216 ~ 13357051 (+)
si:dkey-204f11.64 LOC105898698 other upstream 1175 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 128118 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 587228 12519837 ~ 12528803 (+)
G19326 NA other upstream 602310 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 800985 12303364 ~ 12315046 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 568929 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 866353 13995961 ~ 14002378 (+)
G19973 NA other downstream 919882 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 988859 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 990577 14120185 ~ 14123128 (+)

Expression


Co-expression Network