yipf2 (yipf2,LOC107698640,LOC107601236,LOC107689625,LOC107724423)


Basic Information

Item Value
gene id yipf2
gene name yipf2,LOC107698640,LOC107601236,LOC107689625,LOC107724423
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13130936 ~ 13134638 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234773.1
CGGTTAGTCAAAAGATACTATTAAATACCAGCCGGCCTGACGGAAGCAATTATTTTTGTAGCCTACCTGCTAGCTCGAAACGAGTTTGATTGTTGAAGGAGTCAGGATTGACGCAGGATTATCGTATTGTAGCAGCTGCCAGATAGTATTCTTATGAGAGCTCTCTGAGTATTCTGTGATCTCCAGTCATGGCTAGTCCAGATGATTTAAAGTTTCAGGAGTTTGAGGAAGCCGCAGATCTCCTGTCTTCAAATCCTGGAGCCTCAACCCTCAGCATCTCCAGCCCCGGCGCCGCAGCCTCCCCCGGAGATGTCAGAGTGGATCTGTCAGACGATGAAGACAATCAGCAAGAGAGTTCAGAGTTGCTTGGAGGTGAAAAACAAACTGGTGGTTTTTGGACGTTTGAGTACTATCAGTCATTCTTCAATGTAGATACAACGCAGGTGCTGGATAGGATAAAGGGCTCAGTCATGCCTTTGCCAGGACGGAATTTCGTCAAACACCACATTCGAAACAACCCTGATCTCTATGGTCCTTTCTGGATCTGTGTGACTCTAGTGTTCTCAGTGGCCATCAGCGGAGACCTCTACACATTTCTGATTAATAAGGGAGACCCAGAGTTTCACTACAGACCGCAGTTCAACAAAGtCTCGATTGCAGCCGTCACCGTGTTCCTCTACGCTTGGCTGGTGCCTCTAGGACTCTGGGGCTTCCTAACGTGGCGTCAAAGCGTTGAGAGACAAATCAGCGGTTACACGTTCTTAGAGACCGTGTGTGTCTATGGTTATTCTCTGTTCATTTATATCCCTACCTCGATATTATGGACCATTCCCGTCTACTGGATCGAGTGGCTATTGATTGTCATCGCCATGGTGATCTCGGGCTCAGTGTTGGTCATGACATTCTGGCCGGCCGTTCGCGATGACACGAGACTAACAGCATTCGCTACCATGGCTGTAATAGTGGCACTTCATGCCCTTCTGGCTGTTGGCTTTAAGCTCTACTTCTTCAAAACGCCAACACACACAGGATCATCGCACCCGGGACAACACACCACCCCAGCCGCAAATCACACGACGCTTGCTGTGGGCAAGCCCTCAGCGACCAACTGAACGGGAACCTACGAGTCTTTATATTCAAAGGACACGAAAGGCGTGTAGGAATTATGATAAATGAGCAAAGAAGGAGTTCAGATTAGTGCGCCGATGCTTCATGCACACAAGCATTCCCAGCAAACACGCTGAAAAAGTGTTTCCAGTTTGTAACTTATCCAGCAGATAACCTCCCTCAGATCACAAGGACTTTAGTTTCTAATGCTTTTCTTTAATATGAAAAGTGACCTGATATTTTTAGTGTTATggtcactttttttgtttgtttctttaaatgaaaatagagTAATTTATAAAGAGTGATCTTGTATTACTGTGAACTGATTTGAGGTTTGCCTTATAACCCCTGACTGCTTTCTTTCCTTTTAGGCTACTTTTTCTCATTCTGTACGTTGAGAGGAAGTGCCTGTATCAAGTATTTAATGTTGCTTTCCTGGACAGTTTTCTGCTCGACACTGTggattaaaatcatttttgtcaggGACAAA
>XM_043234774.1
CGGTTAGTCAAAAGATACTATTAAATACCAGCCGGCCTGACGGAAGCAATTATTTTTGTAGCCTACCTGCTAGCTCGAAACGAGTTTGATTGTTGAAGGAGTCAGGATTGACGCAGGATTATCGTATTGTAGCAGCTGCCAGTATTCTTATGAGAGCTCTCTGAGTATTCTGTGATCTCCAGTCATGGCTAGTCCAGATGATTTAAAGTTTCAGGAGTTTGAGGAAGCCGCAGATCTCCTGTCTTCAAATCCTGGAGCCTCAACCCTCAGCATCTCCAGCCCCGGCGCCGCAGCCTCCCCCGGAGATGTCAGAGTGGATCTGTCAGACGATGAAGACAATCAGCAAGAGAGTTCAGAGTTGCTTGGAGGTGAAAAACAAACTGGTGGTTTTTGGACGTTTGAGTACTATCAGTCATTCTTCAATGTAGATACAACGCAGGTGCTGGATAGGATAAAGGGCTCAGTCATGCCTTTGCCAGGACGGAATTTCGTCAAACACCACATTCGAAACAACCCTGATCTCTATGGTCCTTTCTGGATCTGTGTGACTCTAGTGTTCTCAGTGGCCATCAGCGGAGACCTCTACACATTTCTGATTAATAAGGGAGACCCAGAGTTTCACTACAGACCGCAGTTCAACAAAGtCTCGATTGCAGCCGTCACCGTGTTCCTCTACGCTTGGCTGGTGCCTCTAGGACTCTGGGGCTTCCTAACGTGGCGTCAAAGCGTTGAGAGACAAATCAGCGGTTACACGTTCTTAGAGACCGTGTGTGTCTATGGTTATTCTCTGTTCATTTATATCCCTACCTCGATATTATGGACCATTCCCGTCTACTGGATCGAGTGGCTATTGATTGTCATCGCCATGGTGATCTCGGGCTCAGTGTTGGTCATGACATTCTGGCCGGCCGTTCGCGATGACACGAGACTAACAGCATTCGCTACCATGGCTGTAATAGTGGCACTTCATGCCCTTCTGGCTGTTGGCTTTAAGCTCTACTTCTTCAAAACGCCAACACACACAGGATCATCGCACCCGGGACAACACACCACCCCAGCCGCAAATCACACGACGCTTGCTGTGGGCAAGCCCTCAGCGACCAACTGAACGGGAACCTACGAGTCTTTATATTCAAAGGACACGAAAGGCGTGTAGGAATTATGATAAATGAGCAAAGAAGGAGTTCAGATTAGTGCGCCGATGCTTCATGCACACAAGCATTCCCAGCAAACACGCTGAAAAAGTGTTTCCAGTTTGTAACTTATCCAGCAGATAACCTCCCTCAGATCACAAGGACTTTAGTTTCTAATGCTTTTCTTTAATATGAAAAGTGACCTGATATTTTTAGTGTTATggtcactttttttgtttgtttctttaaatgaaaatagagTAATTTATAAAGAGTGATCTTGTATTACTGTGAACTGATTTGAGGTTTGCCTTATAACCCCTGACTGCTTTCTTTCCTTTTAGGCTACTTTTTCTCATTCTGTACGTTGAGAGGAAGTGCCTGTATCAAGTATTTAATGTTGCTTTCCTGGACAGTTTTCTGCTCGACACTGTggattaaaatcatttttgtcaggGACAAA

Function

symbol description
yipf2 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF2 (Yip1 domain family member 2).

NR:

description
PREDICTED: protein YIPF1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K22940 YIPF1_2; protein YIPF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234773.1 True 1600 mRNA 0.45 9 13130936 13134638
XM_043234774.1 False 1596 mRNA 0.45 9 13130936 13134638

Neighbor

gene id symbol gene type direction distance location
LOC122341259 clpp,LOC107753176,LOC107590418,LOC107689627,LOC107724426,LOC107698620,LOC107601229 coding downstream 19557 13107831 ~ 13111379 (-)
LOC122341774 NA coding downstream 30292 13097129 ~ 13100644 (-)
LOC122341304 LOC107710248 coding downstream 38090 13092210 ~ 13092846 (-)
LOC122332140 ighm,ighv5-5,ighv5-4,ighv5-8 coding downstream 43669 13086375 ~ 13087267 (-)
LOC122341303 NA coding downstream 45970 13084026 ~ 13084966 (-)
tnrc6c1 LOC107724432,LOC107590414,LOC107601217,LOC107698663 coding upstream 38713 13173351 ~ 13227138 (-)
sept9a sept9a,LOC107689620,LOC107601241,LOC107724438,LOC107688081 coding upstream 150738 13285376 ~ 13348706 (-)
LOC122342101 NA coding upstream 215340 13349978 ~ 13352450 (-)
LOC122342102 nmrk1,LOC107724440,LOC107601244,LOC107682648 coding upstream 219355 13353993 ~ 13358941 (-)
zgc:163143 LOC107724428,LOC107689697,LOC107601243,LOC107688084,LOC107590412 coding upstream 224301 13358939 ~ 13364611 (-)
G19726 NA non-coding downstream 1328 13125521 ~ 13129608 (-)
G19703 ighv6-1 non-coding downstream 39784 13090671 ~ 13091152 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding downstream 50315 13080070 ~ 13080621 (-)
LOC122332187 NA non-coding downstream 58108 13072560 ~ 13072828 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding downstream 228026 12900781 ~ 12902910 (-)
G19811 NA non-coding upstream 222941 13357579 ~ 13357789 (-)
G19872 NA non-coding upstream 498921 13633559 ~ 13633785 (-)
G19947 NA non-coding upstream 762993 13897631 ~ 13898932 (-)
LOC122342150 NA non-coding upstream 783062 13917700 ~ 13930277 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding upstream 924943 14059581 ~ 14060492 (-)
G19676 LOC107690708 other downstream 62746 13005996 ~ 13068190 (-)
G19700 NA other downstream 83442 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 367846 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 451136 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 787064 12339187 ~ 12343872 (-)
gng13b NA other upstream 651371 13786009 ~ 13792602 (-)
G19933 NA other upstream 670730 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 1068292 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 1300509 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1986168 15120806 ~ 15179359 (-)

Expression


Co-expression Network