tufm (tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188)


Basic Information

Item Value
gene id tufm
gene name tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5817043 ~ 5821892 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234821.1
TACAAGGTTTACGGCACGGCGCGAGACGCGTCCAGCGTTGATGGCGTATGTGTGCGTTTCCGCGCATGCGCGTTTGTCTTTGTCCGCAAAATGGCTGCGCTCGTCGGCATCCGCGCGTGCCTCTCCGCTCTGCAGTTGACCTCCCCGAGTTTACTGCACAGCTCGTATAAACTGTGTGCAGTTCCTCTATGTCGAAGGAATTTCGAGGCCGAGGCTAAAAAGGTGTTCTCTCGTTCTAAACCCCATGTGAACATCGGGACCATTGGTCACGTAGATCACGGCAAAACCACGCTGACCGCCGCAATCACCAAAGTTCTTGCCGAAGCCAGCGGGGGACGTTATAAGACGTACGCGGATATTGATAATGCCCCTGAAGAGAAGGCAAGAGGAATCACCATCAACGCCTCGCACGTGGAGTACACCACCGCCAACAGGCACTACGCTCACACCGACTGCCCCGGGCATGCTGACTACGTCAAGAACATGATCACAGGCGCGTCTCAGATGGACGGCTGCATCCTCGTGGTGGCGGCGACCGACGGCCAGATGCCCCAGACTCGTGAGCACCTCCTGCTGGCGCGGCAGATCGGCATCGAGCACGTGGTGGTGTTCATCAACAAAGCCGATGCCGTGGAGGACAAGGAGATGCTGGAACTGGTGGAGCTGGAGATCAGGGAGCTGCTCACCGAGTACGGCTACGATGGAGAAAACTCACCAGTTATTGCTGGATCGGCGCTCTGTGCTCTAGAGaacAGAGAGCCGGAGCTGGGAGTAAACTCCATTATGAAGCTTTTGGAGATGGTAGATAATTATATTCCTTTGCCAAAGAGAGAGCTGGATAAACCATTCCTGCTGCCCATAGAGGGAGTCTGTTCTATTCCAGGTCGTGGTACTGTGGTCACTGGCACACTAGAGCAAGGAATGATCAAGAAAGGAGATGAATGTGAATTTTTCGGACACAATCGTAGCTTTAAGGCCATCATCACAGGTATCGAGATGTTCCATCAGTCTCTAGAGCGGGCCGAGGCGGGCGATAACATTGGCGCTCTGGTTCGCGGCCTGAAGAGGGAGGACGTCCGGAGAGGCATGGTGATGTGCAAACCTGGATCCATCAAGCCGCAACGGAAGATCAAAGCTCAGGTCTACATCCTGAGCAAAGAGGAGGGCGGCAGACACAAGCCGTTCTGCACAAACTTCATGCCGATCATGTTCTCTCTCACCTGGGACATGGCTTGTGTGGTAGAGCTGCTTCCGGGCAAGGAGATGGTGATGCCAGGAGAGGACACCGCTCTAAACCTGATCCTCAGACAGCCCATGGCTCTCAACAAAGGCCAAAGGTTCACGCTCAGAGACGGCAACCAAACCATCGGCACGGGCCTGGTCATGGAAACCCTCCCCTTTACAGATGACGAACGATACACCTTTGGCTGAGAAGGACGACGAACTCTTTTGAGACTTTCGGTGTCTGAAGCCATCGTTAAGTTCTAGACATGTCACTCTAGAATTGAATTGAGGCCACGTTTATattgcaaaatgaaaactgttaaGGATGATGTCTTTGCgaacccttaaaaaaaacagccaccACCAATTTTCTGTACGAGGAAGCGAGTTAAGTATCACTCGGATTAGAAATGTGGAATAATTTGTGTCCGTTTcagcacattaaaatgttccaaACCTGCTCCGCTTTCATTATCTTCTCTCTCGCCTGAGCTGTGAATTATACACAAAGTGAAAGACAGTACATTTGaggaatatttcacaatttaaacTGTACTTGGCTTGTCATTTCTTGCCGCTCGTCCATAGACAAATGTTGCTTTTGCTGTCTGTTTTCCGGTCTTCTgtctaaaaaaaattcaataaaatttaatttagttga

Function

symbol description
tufm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; pectoral fin bud; and segmental plate. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 4. Orthologous to human TUFM (Tu translation elongation factor, mitochondrial).

NR:

description
elongation factor Tu, mitochondrial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K02358 tuf, TUFM; elongation factor Tu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234821.1 True 1885 mRNA 0.51 10 5817043 5821892

Neighbor

gene id symbol gene type direction distance location
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding upstream 236302 5574401 ~ 5580741 (+)
LOC122331145 NA coding upstream 242829 5566565 ~ 5574214 (+)
LOC122331179 LOC107550260,LOC107659569 coding upstream 260904 5551196 ~ 5556139 (+)
LOC122341561 LOC107711124,LOC107659564,LOC107550256,LOC107718588,LOC107656793,LOC107579440 coding upstream 403910 5409599 ~ 5413133 (+)
swsap1 LOC107550247 coding upstream 534722 5280179 ~ 5282321 (+)
amdhd2 amdhd2,LOC107661858,LOC107718599,LOC107653464,LOC107753757 coding downstream 103337 5925229 ~ 5933647 (+)
slc25a19 slc25a19,LOC107661860,LOC107563233,LOC107565621,LOC107653449,LOC107718625 coding downstream 115540 5937432 ~ 5942586 (+)
LOC122341440 fbxw9,LOC107661857 coding downstream 127257 5949149 ~ 5954642 (+)
dhps dhps,LOC107661880,LOC107563249,LOC107653447,LOC106592861 coding downstream 284541 6106433 ~ 6110339 (+)
prkar1b prkar1b,LOC107661853,LOC107653458 coding downstream 390699 6212591 ~ 6265327 (+)
G17337 NA non-coding upstream 64763 5751981 ~ 5752280 (+)
G17312 LOC107550264,LOC107659563,LOC107653452,LOC107563254,LOC107718634 non-coding upstream 79918 5735089 ~ 5737125 (+)
G17322 NA non-coding upstream 121407 5690535 ~ 5695636 (+)
G17315 NA non-coding upstream 168964 5647245 ~ 5648079 (+)
G17300 NA non-coding upstream 222496 5593986 ~ 5594547 (+)
G17405 LOC107661884,LOC107753766,LOC107565624,LOC107718602 non-coding downstream 123401 5945293 ~ 5947708 (+)
G17412 NA non-coding downstream 291314 6113206 ~ 6113606 (+)
G17414 NA non-coding downstream 293812 6115704 ~ 6116092 (+)
G17449 NA non-coding downstream 445505 6267397 ~ 6267696 (+)
G17521 NA non-coding downstream 494376 6316268 ~ 6316621 (+)
G17302 NA other upstream 218811 5597099 ~ 5598232 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other upstream 251069 5557008 ~ 5565974 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other upstream 336436 5415758 ~ 5480607 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other upstream 504672 5310493 ~ 5312371 (+)
G16981 NA other upstream 910077 4905656 ~ 4906966 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 135511 5957403 ~ 5962888 (+)
fbxw9 fbxw9,LOC107661857 other downstream 276309 6098201 ~ 6103626 (+)
LOC122341437 LOC107718607,LOC107653460 other downstream 364916 6186808 ~ 6195038 (+)
G17590 NA other downstream 683023 6504915 ~ 6556750 (+)
LOC122331592 LOC107744988 other downstream 1761462 7583354 ~ 7591526 (+)

Expression


Co-expression Network