amdhd2 (amdhd2,LOC107661858,LOC107718599,LOC107653464,LOC107753757)


Basic Information

Item Value
gene id amdhd2
gene name amdhd2,LOC107661858,LOC107718599,LOC107653464,LOC107753757
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5925229 ~ 5933647 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234827.1
CACGATCAGAGCGCGTGTTTTGGCCACGCCTCCCCATCAGCTGACAGCGCGCGTGACTCAGTGCCGTGCTGACTTCCTAGAGAACACCAGCGAGCGGAGCATCAGAGTAAAAGTATGTGAATTAACGAGTGCTTTTAGGTGTCGGGGTGGGATTTCGGGAGAGATGCCATCCAATAAGAGTGTCTCGGATGCCCCGATCACACAGTTTGTGAACTGCAGGATACTGAAAGATCACAAGCTGCAATGGGAAGACCTGTGGGTTCGCGAGGGCAAGATTTTGAACCCGGAGAAGCTGTTCTTCGATGAGGAGGGTTTTGCGGATCACAGAGTtgactgcaagaaaaaaataattgcgcCTGGCTTCATAGACGTACAGCTAAACGGGGGATATGGCATTGACTTCTCCCAGGCCAGCAGTGACATCAGAGGAGGCGTGGCTCTGGTGGCCAAAAAGATTCTAGAACACGGTGTCACTTCCTTCTGCCCGACCCTCGTCACGTCTCCCCCAGACATATACCATAAGGTCATTCCTGAGCTCAAAGTTCAGGATGGAGGACCTGAAGGGGCAGGTGTTTTAGGTATTCATCTGGAGGGGCCATTCATCAGTGAAGAGAAGAGAGGCGCTCACCCTCCGAAGTTCCTCCGCACCTTTAAAGCAGGCGGCGTGGCCGACCTGATGGAGACTTATGGGCTCCTGGAAAATGTCGCCATGGTAACCCTCGCTCCAGAACTAGCCAATAGCGCGGCAGCAATCCGTGAACTGTCAGGAAGAGGCATAGCGGTGTCACTCGGTCACTCTATGGCTGATCTCTCTCAGGCAGAAGAGGCTGTGCAGAATGGAGCCACGTTCATTACACACTTATTTAACGCCATGTTGCCTttTCACCATCGGGACCCAGGCATTGTGGGATTGCTCACGAGCGATCGTGTTCCAGCAGGTCGGACGGTTTACTACGGGATGATCGCAGACGggatacacacacaccctgcaGCGCTGCGCATCgcacacagagctcatcccgcagggttGGTGTTGGTCACTGATGCTGTGACGGCGATGGGTCTTCCTCCTGGTCGACACACACTCGGACAGCAGCAGatagacatccaggggcttcatgcTTACGTCGCAGGCACTACAACTTTAAGTGGCAGCATCGCAACCATGGACATGTGTGTGAGACACTTTAGAGAGGCGTCAGgctgcACAGTAGAAGCTGCATTAGAAGCTGCATCGCTGCATCCTGCTCAGCTGCTGGGCATCAGTCACAGGAAGGGAACGCTGGAGTACGGCACAGATGCAGATTTTGTAGTACTTGATGACACACTGACCATCAGGGAAACCTACATTGCTGGACAGCAGGTCtggaggaagtgacatcatctGGAGGACAGTCTTCTGCTGGGATCATTAGAGTTTTTTGATTAGAATTTCTCTTTTTTCGTATCACTAAAAAGATGCGttactgcaaaaacatgttATTCTCATTAAATCGAATTCTATTGATTAATTTCTGAATATCTCTTTATGCTCATGTACTGTAATGCATCTTGAGGCATTTAAAAAGAGccagaatgatttttttatcaCATACTGCATGAATGGATTTCTAACGCAGATCGAACTTGTTCATATGTGAAAGACAAGAAAATCTTAAGGGTTCAGTTATTTCAGTAATAACCTACATAATTCAGTGTTCCCAATCTGATGTGAAAGTGGAGAGTTTAACTAACTGATTTCAATAAtgtttctattctattctttttatttgttagcCTTAAGGTTTTATCCTCTTTTAGTCTAACTTTcttttattgataaaaatgtatttttgtgagtCTGAATGAGAAAGATGCTTATATAGTGGACGTATTAAAGATATCCAGCTTACTTGAATTGATTATCTATTTAGTTCattgcaacataaaaaaaaccccgaTATAAATCACAAACAAAGCATTATTCAAATCATGTTTCGGCAATAcaacttcattaaaaaactaCCTCAATCtcacaataaatgcagcttctattaaaaaaaacattgttcaaGTTAA
>XM_043234828.1
CACGCCTCCCCATCAGCTGACAGCGCGCGTGACTCAGTGCCGTGCTGACTTCCTAGAGAACACCAGCGAGCGGAGCATCAGAGTAAAAAGTGCTTTTAGGTGTCGGGGTGGGATTTCGGGAGAGATGCCATCCAATAAGAGTGTCTCGGATGCCCCGATCACACAGTTTGTGAACTGCAGGATACTGAAAGATCACAAGCTGCAATGGGAAGACCTGTGGGTTCGCGAGGGCAAGATTTTGAACCCGGAGAAGCTGTTCTTCGATGAGGAGGGTTTTGCGGATCACAGAGTtgactgcaagaaaaaaataattgcgcCTGGCTTCATAGACGTACAGCTAAACGGGGGATATGGCATTGACTTCTCCCAGGCCAGCAGTGACATCAGAGGAGGCGTGGCTCTGGTGGCCAAAAAGATTCTAGAACACGGTGTCACTTCCTTCTGCCCGACCCTCGTCACGTCTCCCCCAGACATATACCATAAGGTCATTCCTGAGCTCAAAGTTCAGGATGGAGGACCTGAAGGGGCAGGTGTTTTAGGTATTCATCTGGAGGGGCCATTCATCAGTGAAGAGAAGAGAGGCGCTCACCCTCCGAAGTTCCTCCGCACCTTTAAAGCAGGCGGCGTGGCCGACCTGATGGAGACTTATGGGCTCCTGGAAAATGTCGCCATGGTAACCCTCGCTCCAGAACTAGCCAATAGCGCGGCAGCAATCCGTGAACTGTCAGGAAGAGGCATAGCGGTGTCACTCGGTCACTCTATGGCTGATCTCTCTCAGGCAGAAGAGGCTGTGCAGAATGGAGCCACGTTCATTACACACTTATTTAACGCCATGTTGCCTttTCACCATCGGGACCCAGGCATTGTGGGATTGCTCACGAGCGATCGTGTTCCAGCAGGTCGGACGGTTTACTACGGGATGATCGCAGACGggatacacacacaccctgcaGCGCTGCGCATCgcacacagagctcatcccgcagggttGGTGTTGGTCACTGATGCTGTGACGGCGATGGGTCTTCCTCCTGGTCGACACACACTCGGACAGCAGCAGatagacatccaggggcttcatgcTTACGTCGCAGGCACTACAACTTTAAGTGGCAGCATCGCAACCATGGACATGTGTGTGAGACACTTTAGAGAGGCGTCAGgctgcACAGTAGAAGCTGCATTAGAAGCTGCATCGCTGCATCCTGCTCAGCTGCTGGGCATCAGTCACAGGAAGGGAACGCTGGAGTACGGCACAGATGCAGATTTTGTAGTACTTGATGACACACTGACCATCAGGGAAACCTACATTGCTGGACAGCAGGTCtggaggaagtgacatcatctGGAGGACAGTCTTCTGCTGGGATCATTAGAGTTTTTTGATTAGAATTTCTCTTTTTTCGTATCACTAAAAAGATGCGttactgcaaaaacatgttATTCTCATTAAATCGAATTCTATTGATTAATTTCTGAATATCTCTTTATGCTCATGTACTGTAATGCATCTTGAGGCATTTAAAAAGAGccagaatgatttttttatcaCATACTGCATGAATGGATTTCTAACGCAGATCGAACTTGTTCATATGTGAAAGACAAGAAAATCTTAAGGGTTCAGTTATTTCAGTAATAACCTACATAATTCAGTGTTCCCAATCTGATGTGAAAGTGGAGAGTTTAACTAACTGATTTCAATAAtgtttctattctattctttttatttgttagcCTTAAGGTTTTATCCTCTTTTAGTCTAACTTTcttttattgataaaaatgtatttttgtgagtCTGAATGAGAAAGATGCTTATATAGTGGACGTATTAAAGATATCCAGCTTACTTGAATTGATTATCTATTTAGTTCattgcaacataaaaaaaaccccgaTATAAATCACAAACAAAGCATTATTCAAATCATGTTTCGGCAATAcaacttcattaaaaaactaCCTCAATCtcacaataaatgcagcttctattaaaaaaaacattgttcaaGTTAA

Function

symbol description
amdhd2 Predicted to enable N-acetylglucosamine-6-phosphate deacetylase activity. Predicted to be involved in N-acetylglucosamine catabolic process. Predicted to act upstream of or within N-acetylglucosamine metabolic process and carbohydrate metabolic process. Is expressed in blood vessel; immature eye; neural crest; retina; and yolk syncytial layer. Orthologous to human AMDHD2 (amidohydrolase domain containing 2).

NR:

description
N-acetylglucosamine-6-phosphate deacetylase

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0019262 N-acetylneuraminate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0008448 N-acetylglucosamine-6-phosphate deacetylase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01443 nagA, AMDHD2; N-acetylglucosamine-6-phosphate deacetylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234827.1 True 2058 mRNA 0.46 12 5925229 5933647
XM_043234828.1 False 2019 mRNA 0.46 12 5925253 5933647

Neighbor

gene id symbol gene type direction distance location
tufm tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188 coding upstream 103337 5817043 ~ 5821892 (+)
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding upstream 344488 5574401 ~ 5580741 (+)
LOC122331145 NA coding upstream 351015 5566565 ~ 5574214 (+)
LOC122331179 LOC107550260,LOC107659569 coding upstream 369090 5551196 ~ 5556139 (+)
LOC122341561 LOC107711124,LOC107659564,LOC107550256,LOC107718588,LOC107656793,LOC107579440 coding upstream 512096 5409599 ~ 5413133 (+)
slc25a19 slc25a19,LOC107661860,LOC107563233,LOC107565621,LOC107653449,LOC107718625 coding downstream 3785 5937432 ~ 5942586 (+)
LOC122341440 fbxw9,LOC107661857 coding downstream 15502 5949149 ~ 5954642 (+)
dhps dhps,LOC107661880,LOC107563249,LOC107653447,LOC106592861 coding downstream 172786 6106433 ~ 6110339 (+)
prkar1b prkar1b,LOC107661853,LOC107653458 coding downstream 278944 6212591 ~ 6265327 (+)
pdgfab LOC107718638,LOC107653445,LOC107753752,LOC107563229,LOC107661852 coding downstream 342251 6275898 ~ 6293394 (+)
G17337 NA non-coding upstream 172949 5751981 ~ 5752280 (+)
G17312 LOC107550264,LOC107659563,LOC107653452,LOC107563254,LOC107718634 non-coding upstream 188104 5735089 ~ 5737125 (+)
G17322 NA non-coding upstream 229593 5690535 ~ 5695636 (+)
G17315 NA non-coding upstream 277150 5647245 ~ 5648079 (+)
G17300 NA non-coding upstream 330682 5593986 ~ 5594547 (+)
G17405 LOC107661884,LOC107753766,LOC107565624,LOC107718602 non-coding downstream 11646 5945293 ~ 5947708 (+)
G17412 NA non-coding downstream 179559 6113206 ~ 6113606 (+)
G17414 NA non-coding downstream 182057 6115704 ~ 6116092 (+)
G17449 NA non-coding downstream 333750 6267397 ~ 6267696 (+)
G17521 NA non-coding downstream 382621 6316268 ~ 6316621 (+)
G17302 NA other upstream 326997 5597099 ~ 5598232 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other upstream 359255 5557008 ~ 5565974 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other upstream 444622 5415758 ~ 5480607 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other upstream 612858 5310493 ~ 5312371 (+)
G16981 NA other upstream 1018263 4905656 ~ 4906966 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 23756 5957403 ~ 5962888 (+)
fbxw9 fbxw9,LOC107661857 other downstream 164554 6098201 ~ 6103626 (+)
LOC122341437 LOC107718607,LOC107653460 other downstream 253161 6186808 ~ 6195038 (+)
G17590 NA other downstream 571268 6504915 ~ 6556750 (+)
LOC122331592 LOC107744988 other downstream 1649707 7583354 ~ 7591526 (+)

Expression


Co-expression Network