LOC122341451 (LOC107673774,LOC107599333)


Basic Information

Item Value
gene id LOC122341451
gene name LOC107673774,LOC107599333
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6442857 ~ 6444787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234839.1
ATGCCTAAAAGAGCAGGCTTTGGTGATGTGGAACTAAGGATCTTGGTTATCGGGAGCAGTGGTCCATCTCAGTTCCTTCTCACCAACTTTATTCTGGGAAGGGAGGTGTTCTCAGAGGAAGTCTACAGCATTGCGAGCAGCCAGAAGAATGTGGGAGAGTTAGTAGGAAGACGAGTCGCAGTGGTCAACGGACCCAATCTGTACGACAAAGACCTGTCCAAGTCCAAAATGAGGAAAGAGCTGAGAAGGTCGATGTGCTTGTCGACTCCCGGACCTCACGCCATACTCATCGCATTCGACCTGGAGAAGATCTCCCCCAACGATATGAAGACTCCCAAGCTGGTTAAGGATAAATTTGGAGAGAACATCTTGAACTTCACAATGATCCTCTTGGTTTACGACGGGCGTCTGAAAGGCAGAGCGCTGAACGATAAGGTCATGAGAACCGACTGGCATCTGAGGGAGCTCGTGGAGCAATGCAACGGCCAGTATCACGTCTTCAGTAAGAACTGGAGGAACCGCAACGGGAGCCGGGAGCTCCTACACAAGATCGAGCGGATACTGCAGACTATGGGCGGGCACCATTACATTAACAGATCTTACAAGAGGGCAGAGGAGAGCGTTAGAAACGAGGAGAGAAAGCTGCGCAAGAAGAGACAGTCTGAGACCGAGAGGACGTGCCGGGAACTGGAGGCGCAGTTTCGGGGGGATGAGCTGCGCTGGCAGATGGATGCCTTCAATGTGAGAGTCGGGACAGAAATCAGGGCCGAGGCCGAGATGCAGAATAGTTGGCTCAGGACTTCACTGGCCGTGGGACTGGGACTGGGGTTTGTTGTCGGAGCCACTATGGGAATGATCGTGGGCTCTGTGGAAGGACCGGCAGGAATGGCAGTGGGAGGGGCTGTGGGCGGGGTCGTGGGCGGGGCTTCGGGTGCTGCTGCACAGCTGGCCATTGAACACTTGGATGACAGAGTGGGGTCCAATCCAGCCAATTTTAATACGGTTTTTATTAACCGCTTCTTTCGAGCACCTCCAGTCTAA

Function

NR:

description
PREDICTED: GTPase IMAP family member 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234839.1 True 1041 mRNA 0.54 2 6442857 6444787

Neighbor

gene id symbol gene type direction distance location
LOC122333921 LOC107693566,LOC107599328,LOC107673775,LOC107693569,LOC107599331,LOC107653436,LOC107565605,LOC107661871 coding upstream 103456 6328874 ~ 6339401 (+)
btbd17b btbd17b,LOC107753750,LOC107653455,LOC107565606,LOC107661851,LOC107718610,LOC107563241 coding upstream 134005 6304698 ~ 6308852 (+)
ccdc137 NA coding upstream 139034 6299826 ~ 6303823 (+)
pdgfab LOC107718638,LOC107653445,LOC107753752,LOC107563229,LOC107661852 coding upstream 149463 6275898 ~ 6293394 (+)
prkar1b prkar1b,LOC107661853,LOC107653458 coding upstream 177530 6212591 ~ 6265327 (+)
si:dkey-120c6.5 LOC107661876,LOC107602705,LOC107711171 coding downstream 1162 6445949 ~ 6449763 (+)
btr02 btr02,LOC107602701,LOC107711172,LOC107722891,LOC107599333,LOC107661870,LOC107673779 coding downstream 5108 6449895 ~ 6455698 (+)
cldnk cldnk,LOC107673780,LOC107602706,LOC107599294,LOC107711173,LOC107661843,LOC105910960 coding downstream 10252 6455039 ~ 6458981 (+)
hgs hgs,LOC107661832,LOC107673777 coding downstream 15958 6460745 ~ 6473566 (+)
mrpl12 mrpl12,LOC107661846,LOC107722894,LOC107711195,LOC107673776,LOC107599340,LOC107602707,LOC106606250 coding downstream 31922 6476709 ~ 6480102 (+)
G17560 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 5889 6436732 ~ 6436968 (+)
G17524 NA non-coding upstream 24494 6417662 ~ 6418363 (+)
G17528 LOC107693569,LOC107673775,LOC107661871,LOC107722887,LOC107563216,LOC107711138,LOC107572241,LOC107661873 non-coding upstream 89032 6346536 ~ 6353825 (+)
G17521 NA non-coding upstream 126236 6316268 ~ 6316621 (+)
G17449 NA non-coding upstream 175161 6267397 ~ 6267696 (+)
G17584 NA non-coding downstream 30312 6475099 ~ 6475619 (+)
G17630 NA non-coding downstream 178901 6623688 ~ 6625296 (+)
G17662 NA non-coding downstream 259627 6704414 ~ 6704702 (+)
G17663 NA non-coding downstream 260408 6705195 ~ 6705405 (+)
G17683 NA non-coding downstream 402151 6846938 ~ 6847606 (+)
LOC122341437 LOC107718607,LOC107653460 other upstream 247819 6186808 ~ 6195038 (+)
fbxw9 fbxw9,LOC107661857 other upstream 339231 6098201 ~ 6103626 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other upstream 479969 5957403 ~ 5962888 (+)
G17302 NA other upstream 844625 5597099 ~ 5598232 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other upstream 876883 5557008 ~ 5565974 (+)
G17590 NA other downstream 60128 6504915 ~ 6556750 (+)
LOC122331592 LOC107744988 other downstream 1138567 7583354 ~ 7591526 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other downstream 1211244 7656031 ~ 7725519 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other downstream 1363456 7808243 ~ 7821078 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other downstream 1394169 7838956 ~ 7841669 (+)

Expression


Co-expression Network