slc25a19 (slc25a19,LOC107661860,LOC107563233,LOC107565621,LOC107653449,LOC107718625)


Basic Information

Item Value
gene id slc25a19
gene name slc25a19,LOC107661860,LOC107563233,LOC107565621,LOC107653449,LOC107718625
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5937432 ~ 5942586 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234842.1
TCCAGTCATTGGTGTCCAGCAGAGAAGAGCATGAGGAGGTGTCCTCTAACATCACACCGCTGCTATGCACTCATAAGAGAACAGCACAAATACATATTCTACAGAGGAGCCCGGTGCACACTAAAGTGCACTCCCTAAAGAAACTGTGTTTGTGATCTGAGCAGGGATGGTGGGCTATGATCCAGACTCCCCCGGTGCGTCTCTCTCCCCCGAGGAAGCTGCTCTGGCCGGGTCGGCGGCGGGAATGGTCACCCGAGCCCTCATCAGCCCTCTAGACGTCATCAAAATCAGATTTCAGTTGCAGATCGAGCAGGTGTCCTGGAGGAGGCGTCAGGGGAAGTACTGGGGCTTATGGCAGGCCACACGCTGTATTATGACTGAAGAAGGACTTCCTGCATTCTGGAAAGGTCACATTCCTGCCCAGCTGCTGTCTGTGTGTTATGGAGCAGTTCAGTTTGCGAGTTTCGAAGCCTTGACAGAGCTGGTCCATAAGAAGATGAGCTATAACAGCCAGACCCCAGGAGTGCACTTCATCTGCGGCGGGTTGGCCGCCTGCTCCGCCACCGTCGCCTGCCAGCCGCTGGATACGCTCCGTACGCGCTTCGCTGCTCAGGGCGAACCCAAGGTGTATCGTAACCTCAGACATGCCGTGGCCACAATGTTTCACGCAGAGGGGCCCTTCACCTTCTACAGGGGCCTCACACCCACCCTAGTGGCCGTGTTTCCGTACGCAGgcctgcagtttttttataatgttctgAAAAAACTTCTTGAGCCCCAAGACGCCAAATCTAAAGGAGGTTTACACAGTCTGATCAGCGGTAGCTGTGCTGGGGTCATCAGTAAAACCATCACGTACCCCTTCGATCTGATCAAAAAGAGACTTCAAGTGGGTGGGTTTGAAGAAGCCAGGATGAAGTTTGGACAGGTGCGGACGTATCGCGGCTTTGCCGACTGTGTGTCGAGGATCGGCAGAGAGGAAGGCCTCCGGGGTTTCTTTAAGGGTCTCTCTCCCAGTCTCTTGAAGGCCGCTCTGTCCACGGGCTTCACCTTCTTCTGGTACGAGTTCTTCATCAACGCCATCGTCAGCCTCAAGAGCAGCTAGTGAGCAGTGACTCCACAGACGTCCTTCAGAGACATTTTAGATCCGCGTGTGTTTTATGGTGTTGATGTATTAGGGCGTGAAGCGAAGAGGGACCATTAGCTGCTCTCAAAAGAACAGGCACTGAGTCGGGAGTTTTTTAATCACACAGGAAAAACATTTTGCGCTCCACTAAAGCCTTGAACTGAACAATCAGCTGAAACCCGTTCCTGTTTACATGAAACGGCGAACCCTACCTCGACCGGAGACTGGAAAACCATTGTTACACATGttaagattttaagattttgaTTTGCACTGCGCGTTAatatctgttttattgtttgtatgcATGGCACTGGAAATCAGAGCGTTTTAACACATGTTTGGTGCAGTTTTACATttcaacaacatttaaaatacatgctcAATACGATGCACGAAATATTCAGTCATCCGTTTTTAACATCGTAATATCaggatttattttgtgtgtgcgtgcgcttTACGTCATTGTTAAGGATTTTAAATGGTGGACGGTTGAATATTTTATagacaaaattgaaaaaaaatgttatgttccATATTAATGGATGGATGAAGGTTGTTTGGAACAGTTTGAACCTCCATGTTTCctgttacttttattttgccgatatttatgtcttttttttttatgtgcttccTCACTGACACGAGTAAAAACAAACTATCTTCCTGTTTTCTCATGTACAAAAACGCATAGCttcaatattacaaaaatgtacgGTAAGTAAATGGGCGACATGTAAGATTAAGaaacaaactatttttctaataaaaaatattttatttaga

Function

symbol description
slc25a19 Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in thiamine pyrophosphate transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in inherited metabolic disorder and microcephaly. Orthologous to human SLC25A19 (solute carrier family 25 member 19).

NR:

description
PREDICTED: mitochondrial thiamine pyrophosphate carrier

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15108 SLC25A19, DNC, TPC1; solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234842.1 True 1918 mRNA 0.47 8 5937432 5942586

Neighbor

gene id symbol gene type direction distance location
amdhd2 amdhd2,LOC107661858,LOC107718599,LOC107653464,LOC107753757 coding upstream 3785 5925229 ~ 5933647 (+)
tufm tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188 coding upstream 115540 5817043 ~ 5821892 (+)
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding upstream 356691 5574401 ~ 5580741 (+)
LOC122331145 NA coding upstream 363218 5566565 ~ 5574214 (+)
LOC122331179 LOC107550260,LOC107659569 coding upstream 381293 5551196 ~ 5556139 (+)
LOC122341440 fbxw9,LOC107661857 coding downstream 6563 5949149 ~ 5954642 (+)
dhps dhps,LOC107661880,LOC107563249,LOC107653447,LOC106592861 coding downstream 163847 6106433 ~ 6110339 (+)
prkar1b prkar1b,LOC107661853,LOC107653458 coding downstream 270005 6212591 ~ 6265327 (+)
pdgfab LOC107718638,LOC107653445,LOC107753752,LOC107563229,LOC107661852 coding downstream 333312 6275898 ~ 6293394 (+)
ccdc137 NA coding downstream 357240 6299826 ~ 6303823 (+)
G17337 NA non-coding upstream 185152 5751981 ~ 5752280 (+)
G17312 LOC107550264,LOC107659563,LOC107653452,LOC107563254,LOC107718634 non-coding upstream 200307 5735089 ~ 5737125 (+)
G17322 NA non-coding upstream 241796 5690535 ~ 5695636 (+)
G17315 NA non-coding upstream 289353 5647245 ~ 5648079 (+)
G17300 NA non-coding upstream 342885 5593986 ~ 5594547 (+)
G17405 LOC107661884,LOC107753766,LOC107565624,LOC107718602 non-coding downstream 2707 5945293 ~ 5947708 (+)
G17412 NA non-coding downstream 170620 6113206 ~ 6113606 (+)
G17414 NA non-coding downstream 173118 6115704 ~ 6116092 (+)
G17449 NA non-coding downstream 324811 6267397 ~ 6267696 (+)
G17521 NA non-coding downstream 373682 6316268 ~ 6316621 (+)
G17302 NA other upstream 339200 5597099 ~ 5598232 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other upstream 371458 5557008 ~ 5565974 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other upstream 456825 5415758 ~ 5480607 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other upstream 625061 5310493 ~ 5312371 (+)
G16981 NA other upstream 1030466 4905656 ~ 4906966 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 14817 5957403 ~ 5962888 (+)
fbxw9 fbxw9,LOC107661857 other downstream 155615 6098201 ~ 6103626 (+)
LOC122341437 LOC107718607,LOC107653460 other downstream 244222 6186808 ~ 6195038 (+)
G17590 NA other downstream 562329 6504915 ~ 6556750 (+)
LOC122331592 LOC107744988 other downstream 1640768 7583354 ~ 7591526 (+)

Expression


Co-expression Network