prkcsh (prkcsh,LOC107725022,LOC107754018,LOC107703311,LOC107587972)


Basic Information

Item Value
gene id prkcsh
gene name prkcsh,LOC107725022,LOC107754018,LOC107703311,LOC107587972
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9909976 ~ 9917069 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234887.1
AGCGAATTAATGTTGTACAATGGATTATTTTAGATGTCTTTGACTAATTTTTTACAAGCGCACATATAGTTTGCGTGGTGTTTATTGAAACATAGCACCTGCTATCTTGACGCTGTACTGTTTATCTCTTCTGCTCGGTCACCCGCCTCTAGTGGGAGTTCGCGTTTGTCCCTGCGTTTCCTGAGGCATCATGACCTGCCTGCACCTGCTGTTAACATTGGCCTTTGCTGTCAGTTTGGGGACACCTGTGGAGATTCAGCGACCACGAGGAGTGCCACTGACAAAGAAACCGTTTTATGAGGAGAACAAGCCTTTCACCTGTCTCGATGGATCCCGGACCATTCCTTTTGACCGAGTGAATGATGACTACTGTGACTGCAAGGATGGTTCAGATGAGCCAGGCACCGCTGCTTGTCCAAATGGCAGCTTCCATTGCACCAATGCTGGTTACCGGCCCATGTTTATCCCATCCTCCCGTATTAATGACGGCATCTGTGACTGCTGCGATACTACTGATGAGTACAACAGCGGagccaaatgtgaaaataccTGCAAGGAATTGGGACGTAAAGAGCGGGAAGTTTTGCAAAAGATGGCTGAGATCACCAAAGAGGGATTTCTCCTGAAACAGCAGCTCATTGAGGAAGCCAAGAAAGGACGACAAGAAAAGCAGGGTACGGTTACCAACATGCAGGAAAATAAGAAACAGCTCGAGGAGAAAGTTGAAGCGCTTAGGACGGTGAAAGAAACAGCAGAGCAGCCTGAGAAGGAAGCTAAAGAGCGCCACCTCAAGGCCTGGGAAGAGCAAAAGGCAGCTATTCACTTGGAGAAGGACAAAGCCAAAATGGCAGAAGCCTTTTTGGAGCTGGATGACAATGCAGATGGCTTTGTGTCTGTTTCTGAGCTTCAGTCTCACGCTGAATTGGATCCAGATGCTGATGGCACACTTACTGAAACTGAGATCCAGGGACTGATGGGAGGAGCTGAGCAGGTGGACACGGCAACATTTGAGAGTGTTTGGACCAACATTAAAGACAAGTACCACTCAGAGTCCCAGCCCGAGGAACCTGCCCCAGTGGAAACGCCTCCAGATGAAGTCAAGGAACCAGTGGTAGACAATGAATCCGAGCCGTACCCAGAAGATGACATCTCTGAGGAAGAGGACGAGGACgacgatgatgaagatgattATCACGAAGAAGATGAAAAGGCTCCGCCCACCGTTAAGACCCCCGAGAAGAGTCATGAAGATGAGGAAGCCATGCCGCCCTATGATTCAGACACTCAGACCCTCATCGACGCCGCTCAGAAGGCCAGAGATGATTTTGAGGAGGCTGAAAAAGCTCTTCGGGAGATGGACGATCAAATCAGAAATATTGAAAAAGAGCTGTCTTTTGATTTCGGCCCTCATGCTGAGTTCACTTACCTGTACAGCCAGTGCTACGAACTCGCCACTAGCGAGTACATCTACAGACTCTGTCCTTTCAACCGGGTTTCACAGAAGCCCAAGTACGGGGGCTCAGAGACCAACCTTGGGACGTGGGGAAGCTGGTCAGGGCCTGAAAATAATAAGTACTTGGTGATGAAATACGAGCACGGCACCGGGTGCTGGCAAGGTCCAAACAGATCAACTACAGTGAAGCTGACTTGTGGGAAGGAGACTGTGGTGACCTCGACATCGGAGCCGAGTCGCTGTGAATACCTGATGGAATTCACCACTCCTGCGGTGTGCCAAGAGCCGGCCGGCGCTGACCCCTCGCCACACGTGCACCCGGAGCTCTAGACTCCACGCTCTCCGCCCGTCGACGCATGGTTGTTGCTCTGTGGGAACATTAGCTTCATTTCCTGTTCAGGCTGTTTAAGAACCTCTTCCATTAGTTTTGAATCGGCTAAATGAGGCTGGAAGTTGGGAGAGCATGACATTCGGTaaactgtaatgttttgttgttgtttttactggGGGGGGGGGATCTGATCTCTTCACATTCCATAGATAAATTTGGGAATAAAATGTGACTTGTTCAAAAAAGGCCTTAGTTAATTTCACACTATTAATCTTTTGCACTGTGTACTCTTATTTTCACACATTACAGTCGGATAGCCCTTTTCCGTTTGGGTACATAAGAAAAATTGTGGCAGTTGAGCACTgttgaaataaattcatattaaaatgtatatttcaaaaa
>XM_043234888.1
GCCGCTTTCCTCCTCTCGAATCCACCAATCATTTGAGAACACCGCTCATCTAGTGACGTAACAAACGGTGCGAGAACGCTCTTCGGAAGTCACCCGCCTCTAGTGGGAGTTCGCGTTTGTCCCTGCGTTTCCTGAGGCATCATGACCTGCCTGCACCTGCTGTTAACATTGGCCTTTGCTGTCAGTTTGGGGACACCTGTGGAGATTCAGCGACCACGAGGAGTGCCACTGACAAAGAAACCGTTTTATGAGGAGAACAAGCCTTTCACCTGTCTCGATGGATCCCGGACCATTCCTTTTGACCGAGTGAATGATGACTACTGTGACTGCAAGGATGGTTCAGATGAGCCAGGCACCGCTGCTTGTCCAAATGGCAGCTTCCATTGCACCAATGCTGGTTACCGGCCCATGTTTATCCCATCCTCCCGTATTAATGACGGCATCTGTGACTGCTGCGATACTACTGATGAGTACAACAGCGGagccaaatgtgaaaataccTGCAAGGAATTGGGACGTAAAGAGCGGGAAGTTTTGCAAAAGATGGCTGAGATCACCAAAGAGGGATTTCTCCTGAAACAGCAGCTCATTGAGGAAGCCAAGAAAGGACGACAAGAAAAGCAGGGTACGGTTACCAACATGCAGGAAAATAAGAAACAGCTCGAGGAGAAAGTTGAAGCGCTTAGGACGGTGAAAGAAACAGCAGAGCAGCCTGAGAAGGAAGCTAAAGAGCGCCACCTCAAGGCCTGGGAAGAGCAAAAGGCAGCTATTCACTTGGAGAAGGACAAAGCCAAAATGGCAGAAGCCTTTTTGGAGCTGGATGACAATGCAGATGGCTTTGTGTCTGTTTCTGAGCTTCAGTCTCACGCTGAATTGGATCCAGATGCTGATGGCACACTTACTGAAACTGAGATCCAGGGACTGATGGGAGGAGCTGAGCAGGTGGACACGGCAACATTTGAGAGTGTTTGGACCAACATTAAAGACAAGTACCACTCAGAGTCCCAGCCCGAGGAACCTGCCCCAGTGGAAACGCCTCCAGATGAAGTCAAGGAACCAGTGGTAGACAATGAATCCGAGCCGTACCCAGAAGATGACATCTCTGAGGAAGAGGACGAGGACgacgatgatgaagatgattATCACGAAGAAGATGAAAAGGCTCCGCCCACCGTTAAGACCCCCGAGAAGAGTCATGAAGATGAGGAAGCCATGCCGCCCTATGATTCAGACACTCAGACCCTCATCGACGCCGCTCAGAAGGCCAGAGATGATTTTGAGGAGGCTGAAAAAGCTCTTCGGGAGATGGACGATCAAATCAGAAATATTGAAAAAGAGCTGTCTTTTGATTTCGGCCCTCATGCTGAGTTCACTTACCTGTACAGCCAGTGCTACGAACTCGCCACTAGCGAGTACATCTACAGACTCTGTCCTTTCAACCGGGTTTCACAGAAGCCCAAGTACGGGGGCTCAGAGACCAACCTTGGGACGTGGGGAAGCTGGTCAGGGCCTGAAAATAATAAGTACTTGGTGATGAAATACGAGCACGGCACCGGGTGCTGGCAAGGTCCAAACAGATCAACTACAGTGAAGCTGACTTGTGGGAAGGAGACTGTGGTGACCTCGACATCGGAGCCGAGTCGCTGTGAATACCTGATGGAATTCACCACTCCTGCGGTGTGCCAAGAGCCGGCCGGCGCTGACCCCTCGCCACACGTGCACCCGGAGCTCTAGACTCCACGCTCTCCGCCCGTCGACGCATGGTTGTTGCTCTGTGGGAACATTAGCTTCATTTCCTGTTCAGGCTGTTTAAGAACCTCTTCCATTAGTTTTGAATCGGCTAAATGAGGCTGGAAGTTGGGAGAGCATGACATTCGGTaaactgtaatgttttgttgttgtttttactggGGGGGGGGGATCTGATCTCTTCACATTCCATAGATAAATTTGGGAATAAAATGTGACTTGTTCAAAAAAGGCCTTAGTTAATTTCACACTATTAATCTTTTGCACTGTGTACTCTTATTTTCACACATTACAGTCGGATAGCCCTTTTCCGTTTGGGTACATAAGAAAAATTGTGGCAGTTGAGCACTgttgaaataaattcatattaaaatgtatatttcaaaaa

Function

symbol description
prkcsh Predicted to enable calcium ion binding activity and kinase activity. Acts upstream of or within liver development and pronephros development. Predicted to be located in endoplasmic reticulum. Predicted to be part of glucosidase II complex. Used to study polycystic liver disease. Human ortholog(s) of this gene implicated in liver disease and polycystic liver disease. Orthologous to human PRKCSH (protein kinase C substrate 80K-H).

NR:

description
PREDICTED: glucosidase 2 subunit beta isoform X4

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0006491 N-glycan processing biological_process
GO:0016310 phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K08288 PRKCSH; protein kinase C substrate 80K-H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234887.1 True 2186 mRNA 0.48 18 9909976 9916975
XM_043234888.1 False 2137 mRNA 0.49 18 9909976 9917069

Neighbor

gene id symbol gene type direction distance location
LOC122338283 LOC107754021,LOC108443460,LOC103358228,LOC100691522,LOC107587920,LOC107674652,LOC107703354 coding downstream 31399 9833670 ~ 9878577 (-)
kank2 kank2,LOC107703353,LOC107674641,LOC107596805,LOC107587974,LOC107754027 coding downstream 77759 9811193 ~ 9832217 (-)
hbae3 hbae3,LOC107674645,LOC107588003,LOC107703327 coding downstream 100648 9808052 ~ 9809328 (-)
LOC122341755 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding downstream 107885 9801281 ~ 9802091 (-)
LOC122341747 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding downstream 111177 9797999 ~ 9798799 (-)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 24216 9941285 ~ 9963128 (-)
mettl22 LOC107738618,LOC107733833,LOC107590588,LOC107685927,LOC107568640,LOC107690247 coding upstream 47382 9964451 ~ 9974561 (-)
fbxl16 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107733860,LOC107568127,LOC107690242 coding upstream 380361 10297430 ~ 10315726 (-)
gsg1l gsg1l,LOC107690243,LOC107738642,LOC107685933,LOC107568433,LOC103031039,LOC108436662 coding upstream 415154 10332223 ~ 10346307 (-)
si:ch211-76l23.4 si:ch211-76l23.4 coding upstream 452987 10370056 ~ 10372203 (-)
G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding downstream 1359 9901531 ~ 9908617 (-)
G18634 LOC107596828,LOC107588005,LOC107596825,LOC107703325,LOC107587921,LOC108440249,LOC108440213 non-coding downstream 116791 9789616 ~ 9793185 (-)
G18628 hbaa1,si:ch211-5k11.8,LOC107682494,LOC107587926 non-coding downstream 123852 9785249 ~ 9786124 (-)
G18623 NA non-coding downstream 156454 9753235 ~ 9753522 (-)
G18608 NA non-coding downstream 263410 9646313 ~ 9646566 (-)
G18717 NA non-coding upstream 484764 10401833 ~ 10402211 (-)
G18745 NA non-coding upstream 657098 10574167 ~ 10579140 (-)
G18771 NA non-coding upstream 760388 10677457 ~ 10678580 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding upstream 772095 10689164 ~ 10697539 (-)
LOC122334019 NA non-coding upstream 772350 10689419 ~ 10695504 (-)
G18433 LOC107670519,LOC107563315 other downstream 447071 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 771887 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 902533 8992714 ~ 9007443 (-)
fmc1 NA other downstream 1511148 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 1690921 8218902 ~ 8219055 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 76764 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 477245 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1094867 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 1494916 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 1777203 11694272 ~ 11714719 (-)

Expression


Co-expression Network