zgc:65811 (LOC107656948,LOC107698068,LOC107751600,LOC107575948,LOC107569882,LOC107732520,LOC107732523)


Basic Information

Item Value
gene id zgc:65811
gene name LOC107656948,LOC107698068,LOC107751600,LOC107575948,LOC107569882,LOC107732520,LOC107732523
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8513413 ~ 8524779 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234896.1
GAGCTGAGCACCAATGAGCACAGCGCAGCGGGGACGTGCGCAAGACCGCGGCGGGCACGCGCACAGCAGCGGGGATCCGCAAAGAGAGAAGCAGGACGCGAGCGCTCCTCATTTTTAACTACATACTGaacaagGGAAATCAAACGGATCGCCATGGACGGGTGCGCGCAGATGTGTAAATGTTTCCTGATCCTGTTTAACGTTCTATTTGCACTGGTGGGCTTCGGTCTGGTGGCTCTGGGAATGTGGCTTCGGTTCGGTGCAGAGACCCGAGGATTCTTCGACATTGACCTGAACACAGCTCAGTTCAACATCGgagTGACCGTGCTAGTGGTCACCGGCGTCCTGATGCTGCTGGTGGCCATCATCGGTGACTGTGGAGCCTGCAACAACAGCAAATCAGCTCTCGCAGTGTTTTCTGGCCTGCTGTCCTTTCTGATCATCATTGAAATCGCAGCCGGCGTGATGGCGTTCATGTGGCACGACCAGGTTTCAGATGAGTTGGTTAAATTCTACACCACCATCTACGCTCAGTATCTGAACACCAGAAGTCCCGGTCAAGCGGTCACCCTCAAATTATTCCACAACGCTttcgACTGCTGTGGCATCGGGGGAACGATTGAGATGTTTGTGCGAGACACCTGTCCAGACGGCAACTTGCTGAAGCAGCTCACCTATTCTagctgTCCCGGCATGATCCACAACGCCTTCAACTCCAACGCTCCACTGGTGCTGGGAGGATTTCTGGGGATGGCAGGAATCATGACGCTGGCACTGATCTGCAGCTGTGTTCTCAGAAGACATGACTCGGTGTCTCATGCATCTCCTCCTGCGTACCTGCTCCTCAGCTCTCCACCCGCCGCCGCAGCCGCCGCTCCAGATGCCCGACTCATCATATaacccctctctctttctctctttctctctctctgctcgaCAGCTGCTGGCGCTCATCTGCAGCTCTGTGCTCTGTAGTAGCCTCAAGACGTCTTTCTACTCTTCTCCATCCATCTACTGAGCCTCCACTCGTCTGTCTGACGGACGGATGACTTTGGTCAAAGGTCAAGGGAATCACATATGTGTGTCTGAACTGcaccattttaacatttctgttcaaCTCTTCAATCTAAACTGCAGCAAATTAAAGTCAAACGGGTTTCTCCTGGCATCTCCTGTAGTTTGTAatgctttgtttaatttatcATGATACATGATAAAGCTCAATGTCAGGTCTTATTTTACTGCTTTAATGTTAGTGATTTGCAACTCTGTTACTCGCTGTCTGTTACAATGTTGTCCTGAATATTTCATTCTCTTGCTGTATGACTGAAATCTGTATGTTTTACGTTTATTTTTTCCAATGACATTAAAGAAACATTCCCATA
>XM_043234898.1
CACAGCAGCGGGGATCCGCAAAGAGAGAAGCAGGACGCGAGCGCTCCTCATTTTTAACTACATACTGaacaaggcaagtttatttaccCTGTGGCCATTCTGTTGCATGCGTTACATCGGAAGGCTTCCCAAATTCTATGCTCTAAGGAAATCAAACGGATCGCCATGGACGGGTGCGCGCAGATGTGTAAATGTTTCCTGATCCTGTTTAACGTTCTATTTGCACTGGTGGGCTTCGGTCTGGTGGCTCTGGGAATGTGGCTTCGGTTCGGTGCAGAGACCCGAGGATTCTTCGACATTGACCTGAACACAGCTCAGTTCAACATCGgagTGACCGTGCTAGTGGTCACCGGCGTCCTGATGCTGCTGGTGGCCATCATCGGTGACTGTGGAGCCTGCAACAACAGCAAATCAGCTCTCGCAGTGTTTTCTGGCCTGCTGTCCTTTCTGATCATCATTGAAATCGCAGCCGGCGTGATGGCGTTCATGTGGCACGACCAGGTTTCAGATGAGTTGGTTAAATTCTACACCACCATCTACGCTCAGTATCTGAACACCAGAAGTCCCGGTCAAGCGGTCACCCTCAAATTATTCCACAACGCTttcgACTGCTGTGGCATCGGGGGAACGATTGAGATGTTTGTGCGAGACACCTGTCCAGACGGCAACTTGCTGAAGCAGCTCACCTATTCTagctgTCCCGGCATGATCCACAACGCCTTCAACTCCAACGCTCCACTGGTGCTGGGAGGATTTCTGGGGATGGCAGGAATCATGACGCTGGCACTGATCTGCAGCTGTGTTCTCAGAAGACATGACTCGGTGTCTCATGCATCTCCTCCTGCGTACCTGCTCCTCAGCTCTCCACCCGCCGCCGCAGCCGCCGCTCCAGATGCCCGACTCATCATATaacccctctctctttctctctttctctctctctgctcgaCAGCTGCTGGCGCTCATCTGCAGCTCTGTGCTCTGTAGTAGCCTCAAGACGTCTTTCTACTCTTCTCCATCCATCTACTGAGCCTCCACTCGTCTGTCTGACGGACGGATGACTTTGGTCAAAGGTCAAGGGAATCACATATGTGTGTCTGAACTGcaccattttaacatttctgttcaaCTCTTCAATCTAAACTGCAGCAAATTAAAGTCAAACGGGTTTCTCCTGGCATCTCCTGTAGTTTGTAatgctttgtttaatttatcATGATACATGATAAAGCTCAATGTCAGGTCTTATTTTACTGCTTTAATGTTAGTGATTTGCAACTCTGTTACTCGCTGTCTGTTACAATGTTGTCCTGAATATTTCATTCTCTTGCTGTATGACTGAAATCTGTATGTTTTACGTTTATTTTTTCCAATGACATTAAAGAAACATTCCCATA
>XM_043234899.1
GAGCTGAGCACCAATGAGCACAGCGCAGCGGGGACGTGCGCAAGACCGCGGCGGGCACGCGCACAGCAGCGGGGATCCGCAAAGAGAGAAGCAGGACGCGAGCGCTCCTCATTTTTAACTACATACTGaacaagGGAAATCAAACGGATCGCCATGGACGGGTGCGCGCAGATGTGTAAATGTTTCCTGATCCTGTTTAACGTTCTATTTGCACTGGTGGGCTTCGGTCTGGTGGCTCTGGGAATGTGGCTTCGGTTCGGTGCAGAGACCCGAGGATTCTTCGACATTGACCTGAACACAGCTCAGTTCAACATCGgagTGACCGTGCTAGTGGTCACCGGCGTCCTGATGCTGCTGGTGGCCATCATCGGTGACTGTGGAGCCTGCAACAACAGCAAATCAGCTCTCGCAGTGTTTTCTGGCCTGCTGTCCTTTCTGATCATCATTGAAATCGCAGCCGGCGTGATGGCGTTCATGTGGCACGACCAGGTTTCAGATGAGTTGGTTAAATTCTACACCACCATCTACGCTCAGTATCTGAACACCAGAAGTCCCGGTCAAGCGGTCACCCTCAAATTATTCCACAACGCTttcgACTGCTGTGGCATCGGGGGAACGATTGAGATGTTTGTGCGAGACACCTGTCCAGACGGCAACTTGCTGAAGCAGCTCACCTATTCTagctgTCCCGGCATGATCCACAACGCCTTCAACTCCAACGCTCCACTGGTGCTGGGAGGATTTCTGGGGATGGCAGGAATCATGCTGCTGGCGCTCATCTGCAGCTCTGTGCTCTGTAGTAGCCTCAAGACGTCTTTCTACTCTTCTCCATCCATCTACTGAGCCTCCACTCGTCTGTCTGACGGACGGATGACTTTGGTCAAAGGTCAAGGGAATCACATATGTGTGTCTGAACTGcaccattttaacatttctgttcaaCTCTTCAATCTAAACTGCAGCAAATTAAAGTCAAACGGGTTTCTCCTGGCATCTCCTGTAGTTTGTAatgctttgtttaatttatcATGATACATGATAAAGCTCAATGTCAGGTCTTATTTTACTGCTTTAATGTTAGTGATTTGCAACTCTGTTACTCGCTGTCTGTTACAATGTTGTCCTGAATATTTCATTCTCTTGCTGTATGACTGAAATCTGTATGTTTTACGTTTATTTTTTCCAATGACATTAAAGAAACATTCCCATA

Function

NR:

description
PREDICTED: CD9 antigen-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234896.1 False 1385 mRNA 0.50 9 8513413 8524779
XM_043234898.1 True 1397 mRNA 0.49 9 8513413 8524718
XM_043234899.1 False 1210 mRNA 0.49 9 8513413 8524779

Neighbor

gene id symbol gene type direction distance location
LOC122331080 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding downstream 10740 8498732 ~ 8502673 (-)
LOC122329328 hebp1,LOC107670539,LOC107661078 coding downstream 124723 8385064 ~ 8388690 (-)
LOC122341283 hebp1,LOC107670539,LOC107661078 coding downstream 207420 8302071 ~ 8305993 (-)
LOC122331822 NA coding downstream 256200 8234899 ~ 8257213 (-)
LOC122334091 NA coding downstream 335418 8174036 ~ 8177995 (-)
LOC122341497 NA coding upstream 6047 8530826 ~ 8535042 (-)
pde6hb LOC107724721 coding upstream 10332 8535111 ~ 8537581 (-)
LOC122330990 LOC107656950 coding upstream 187699 8712478 ~ 8714195 (-)
LOC122341290 LOC107725336,LOC107573036,LOC107698059,LOC107758357,LOC108425688,LOC107661082,LOC107676879 coding upstream 280909 8805688 ~ 8829491 (-)
LOC122332528 LOC107581739,LOC107738031,LOC107674723,LOC107591458,LOC107720084,LOC107654532 coding upstream 464345 8989124 ~ 8991919 (-)
G18196 NA non-coding downstream 16406 8495916 ~ 8497007 (-)
LOC122333427 NA non-coding downstream 91781 8421202 ~ 8421632 (-)
G18183 NA non-coding downstream 108841 8401630 ~ 8404572 (-)
G18155 NA non-coding downstream 123782 8306724 ~ 8389631 (-)
G18225 NA non-coding upstream 50532 8575311 ~ 8575731 (-)
G18228 NA non-coding upstream 92346 8617125 ~ 8617674 (-)
LOC122341612 NA non-coding upstream 242676 8767455 ~ 8773405 (-)
G18273 NA non-coding upstream 477358 9002137 ~ 9002412 (-)
LOC122342131 NA non-coding upstream 482834 9007613 ~ 9007999 (-)
fmc1 NA other downstream 114585 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 294358 8218902 ~ 8219055 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other downstream 295325 8054039 ~ 8218088 (-)
zgc:113210 NA other upstream 467935 8992714 ~ 9007443 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 609264 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 901793 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 1469054 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 1869535 10394314 ~ 10396341 (-)

Expression


Co-expression Network