pde6hb (LOC107724721)


Basic Information

Item Value
gene id pde6hb
gene name LOC107724721
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8535111 ~ 8537581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234901.1
GCTATAATACTGCTCTTCCTCTCGGACAGATCTGTAGTTACAAACGATGATCATCCATTAGCTCTGTTATGTCtagtctgtttgttttgtgcagATCAGTTTTCTTTGCTCTGGTGTTAAAGCAGGAAAACAGACATACTGCTTGGAGTGAAATATTCATGATGAAGAAGCTTTTAAACAGCATCACATGAAGCTAGAAACACCAGCGTCTAaaccacagacagacagatgctACTGTATAACCGGGCAGATAAAGGAAATCTTATAAATCTGTTATGCTAATGAGCTTAGCATCTTAATGAGGCAAGATGTAACAGTGTTTAACGTGGAGGACTCTAGTGAGATGATCATCTGATCGGTGTCTGACACGTCAGGAATACTCGCATTCTTCCTCAAGAGCTTTATTCTGTGATTGTGAGTGTTATTACAATGGataaatcaaaaactaaaaattttcTAATAAATCTAATAAGATCTTCAAAATGTGATTGAAAATCCTAGATTTGTGCTCGGGGCACTGCCGACGTTCTTCTGAGCAGATTCAGTCATTCTTGACACACCTCACACAACAAGATAGTCTTTAAAAGCAAGATATGTCAGATGTAAATAAGAAGTAATCTGAGACATATGAGGCTGATTATGAAGAGCTTTAAAAGTAAGGAGCAGAATCTTGTAGCCAATCGAGATGACAGAGAACAGAGGAGATGTGCTCGATGGAGAAGGTTCTAGTAATTATACAGTCACTTCTGGACCAACTGAAGTATATGAAGGAGTTTGTGAGGAAGTTCAAACTGAAGAGAGAACTAGAACAACAGCTGTGGAACTGGATGTGAGACGCTGGAGTAATATTCACATGCTTTCAAAAGACAAAGTTGTATCAAGGACAACACTCAGATTTTTAAGATAAGAAAATGAGGAGATTAATGagttaaaaatagaaagtaaGAAAGTAAGAAGAACCTGTTTTGTCTATATTCATTTTATGAGTTTTAAGAGATTTAATCTCTTTTAAGCAatccaaaagaaagaaaaatagaatttGCCTCAGAGGGCAAATAGAGCTGGGTTTTCTACACATAACAACTAAACCTAATGCCATATTTCCTAAAAATATAACCAAGAggtaataagtaaaaaataaataaaagagggTCCAAAACAGAGCCTTGGGAAAACCAGCACTAACAGACGAAGACAATGCTCTGATTCCAGTTCCAGTTTGATTGGAGTAATCCCATAATCCTAGAGTCCAGTGACGTGCTCTGGTCGTAAGCGTTGTTCCTGCGCGTGTGTTTCAGGGAAACGCAGACATGAACGCGGCTCCTCCTGCAGGAAGTGCTCTGGCCACACCCGCCAGCACCGCCGGACCAACCACGCCCAAGAAGGGGCCGCCCAAGTTCAAGCAAAGACAGACACGTACCTTCAAGAGCAAGGCCCCCAAGCCCGGACAGAAAGGGTTCGGTGATGACATTCCTGGTATGGAGGGTCTCGGCACAGACATCACTGTGGTGTGCCCATGGGAAGCGTTTGGAGACATGGAGCTCAGCGATCTGGCCAAATATGGCATTATATAAGCTTGGCCTCCTTCAGCCCCGCCCCCTCACCCAGTGGCCCCACCTCTTTTGCTCAATGTTGTCGTGAGGTTATGATGTATGATGGTAAAGGACTGTTTCAATGCATGGTTACTGTCATGATTGATATGATTgctattgtcattattattattattatataatattttatattttgtatatgctGTGATAAGACGACAACTTATCCCCTCCCACTCCCCAGCTGTCAATCAACATCCTGAAATCTAGTCATCAGGGTTAAGACACGCCCCTAGCTGCGACTTCGCCCTTATTACAGAAGGTGTGTTTCCTGTAGCAGCGATGACtgatgacatcacttcctctgTCTCGTAGAGCCTGTcccataaacacatttatattattaaatgtgtcatGTGTGATTACCGGAGTAGAAATCCAATTAAAGTTTCTATTTTCACTAACTCTATTGACGTTATTGCACTAGAATAAAAGCAAATATCATAACATGGTGATGAATATCATTACATACCATTCTGAAAAGCACATTAACATACTGAGTCATGATAAGAACGATTGGTGTGTTtgctcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagatagagagagagactgttCACATACACATAATGCAAATTCAGGAAGAGCAGGAAGAAATCTGTTCAGTTCATCATCTGTGCGTCCCTCC

Function

NR:

description
PREDICTED: retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234901.1 True 2277 mRNA 0.41 3 8535111 8537581

Neighbor

gene id symbol gene type direction distance location
LOC122341497 NA coding downstream 69 8530826 ~ 8535042 (-)
zgc:65811 LOC107656948,LOC107698068,LOC107751600,LOC107575948,LOC107569882,LOC107732520,LOC107732523 coding downstream 10332 8513413 ~ 8524779 (-)
LOC122331080 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding downstream 32438 8498732 ~ 8502673 (-)
LOC122329328 hebp1,LOC107670539,LOC107661078 coding downstream 146421 8385064 ~ 8388690 (-)
LOC122341283 hebp1,LOC107670539,LOC107661078 coding downstream 229118 8302071 ~ 8305993 (-)
LOC122330990 LOC107656950 coding upstream 174897 8712478 ~ 8714195 (-)
LOC122341290 LOC107725336,LOC107573036,LOC107698059,LOC107758357,LOC108425688,LOC107661082,LOC107676879 coding upstream 268107 8805688 ~ 8829491 (-)
LOC122332528 LOC107581739,LOC107738031,LOC107674723,LOC107591458,LOC107720084,LOC107654532 coding upstream 451543 8989124 ~ 8991919 (-)
LOC122329549 chchd5,LOC107711181,LOC107757370,LOC107672451,LOC107670463 coding upstream 527420 9065001 ~ 9066803 (-)
lpar2a lpar2a,LOC107711250,LOC107672473,LOC107587950,LOC107672513,LOC107757366,LOC107670534 coding upstream 592231 9129812 ~ 9132805 (-)
G18196 NA non-coding downstream 38104 8495916 ~ 8497007 (-)
LOC122333427 NA non-coding downstream 113479 8421202 ~ 8421632 (-)
G18183 NA non-coding downstream 130539 8401630 ~ 8404572 (-)
G18155 NA non-coding downstream 145480 8306724 ~ 8389631 (-)
G18225 NA non-coding upstream 37730 8575311 ~ 8575731 (-)
G18228 NA non-coding upstream 79544 8617125 ~ 8617674 (-)
LOC122341612 NA non-coding upstream 229874 8767455 ~ 8773405 (-)
G18273 NA non-coding upstream 464556 9002137 ~ 9002412 (-)
LOC122342131 NA non-coding upstream 470032 9007613 ~ 9007999 (-)
fmc1 NA other downstream 136283 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 316056 8218902 ~ 8219055 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other downstream 317023 8054039 ~ 8218088 (-)
zgc:113210 NA other upstream 455133 8992714 ~ 9007443 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 596462 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 888991 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 1456252 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 1856733 10394314 ~ 10396341 (-)

Expression


Co-expression Network