col1a1a (LOC107585052,LOC107740634,LOC107582926)


Basic Information

Item Value
gene id col1a1a
gene name LOC107585052,LOC107740634,LOC107582926
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22434373 ~ 22449649 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234902.1
GTTTAGGCAGTAGGGAGTTTCTGCTGGGGTCTGGATTGGAGTCACAGAAGACCGGACCCTACCGTGTATGATTGGAgtctaaaggaaaaaaagaacttCCCTCGCCTCAAAGAGTCTACATGTCTAATATTTAGACATGTTCAGCTTTGTGGATATTCGGTTGGCGCTGTTGCTTAGCGCAACGGTGCTTTTGGCAAGAGGACAAGGCGAGGATGATCGCACAGGCGGCAGCTGCACATTGGACGGCCAGGTCTACAATGACAGGGACGTCTGGAAACCAGAGCCATGCCAAATCTGCGTGTGCGACAGCGGCACCGTAATGTGCGACGAGGTGATCTGCGAGGACACGACCGACTGCCCCAACCCAGTGATTCCCCACGACGAGTGCTGCCCCGTCTGCCCAGACGAATTCCAGGAGCCCAGTGTTGAGGGACCAAGAGGTCCTGCTGGTGAGAAGGGTGAAAGGGGTCTTCCAGGCCCTCCCGGCAATGACGGAATCCCTGGACAGCCTGGTCTTCCCGGGCCCCCAGGCCCCCCTGGACCTCCTGGCCTTGGTGGAAACTTTTCTCCTCAGATGTCTGGTGGATTTGATGAGAAATCCGGAGCAATGGCCGTCCCAGGCCCCATGGGACCTATGGGCCCCCGTGGACCCCCTGGACCTCCTGGATCTTCTGGACCCCAAGGATTTAGTGGTCCCCCTGGTGAGCCTGGTGAGGCTGGTGCTCCTGGTCCAATGGGTCCCCGTGGTGCAGCTGGCCCCCCTGGAAAGAACGGAGAGGATGGTGAGTCTGGCAAACCCGGTCGCCCTGGTGAGCGCGGACCCCCTGGCCCACAGGGTGCTCGTGGATTCCCCGGAACCCCTGGACTTCCAGGCATCAAGGGACACAGAGGATTCAGCGGTCTAGATGGAGCTAAGGGAGATACTGGCCCTGCTGGACCTAAGGGTGAGCCTGGTGCCTCTGGTGAGAACGGAACTCCTGGAGCTATGGGCCCTCGTGGTTTGCCTGGCGAGAGAGGCCGTGCTGGTCCTCCTGGTGCTGCTGGTGCTCGTGGTAACGATGGTGCTGCCGGAGCTGCTGGTCCTCCTGGCCCAACTGGCCCCGCTGGTCCCCCAGGATTCCCTGGTGGCCCTGGAGCTAAGGGAGAGGTTGGTGCTCAGGGAACCCGTGGTGCAGAGGGACCCCAGGGAGCCCGTGGTGAGCCTGGTAACCCCGGACCTGCTGGTGCTGCTGGACCCGCTGGTAACAATGGAGCTGATGGTGCCCCTGGTGCCAAGGGTGCTCCTGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGACCTCGTGGTCCTCCTGGAGCTGCTGGAGCTGCTGGTGCCCCTGGCCCTAAGGGTAACACCGGTGAGGTCGGTGCCCCTGGTGCTAAAGGAGAGGCTGGTGCTAAGGGAGAGGCTGGTGCCCAAGGAGTTCAGGGTCCCCCTGGCCCCCCTGGTGAGGAAGGCAAGAGAGGAGCTCGTGGTGAGCCCGGTGCTGCCGGTGTCCGTGGACCCACTGGTGAACGTGGTGCTCCCGGTGCTCGTGGTTTCCCTGGTGCTGATGGATCTTCAGGCCCTAAGGGTGCCCCTGGTGAGCGTGGAGGCCCTGGAGTTGTTGGACCTAAGGGTGCCACTGGTGAGCCTGGCCGCAATGGTGAACCTGGTATGCCAGGATCCAAGGGTATGACTGGTAGCCCTGGTAGCCCTGGACCTGATGGAAAGACCGGAGCTTCTgGTGCTCCTGGACAAGATGGCCGCCCTGGACCACCTGGCCCGGTTGGAGCCAGAGGTCAGCCTGGTGTCATGGGATTCCCCGGACCTAAGGGTGCTGCTGGTGAGGGTGGCAAACCCGGTGAGAGAGGTGTGATGGGTGCTGTTGGTGCCACTGGCGCTCCCGGTAAGGATGGTGATGTTGGTGCCCCTGGTGCTCCTGGACCTGCTGGGCCTGCTGGTGAGAGAGGTGAACAGGGACCTGCTGGTCCTCCTGGATTCCAGGGTCTGCCAGGACCTCAGGGTGCTACTGGTGAGCCTGGCAAGTCTGGTGAACAGGGTCTTCCTGGAGAGGCTGGAGCTCCTGGACCTGCTGGATCTAGAGGCGACAGAGGATTCCCTGGTGAGCGTGGTGCCCCCGGCCCTGCTGGTCCTGCTGGTGCCCGTGGTTCTCCTGGTTCAGCTGGTAACGATGGTGCCAAGGGTGATGCTGGTGCCCCAGGTGCCCCTGGCGCTCAGGGTCCTCCCGGACTTCAAGGAATGCCTGGCGAGCGTGGCGCTGCTGGTCTGCCAGGTCTTAAGGGTGACAGAGGTGACCAAGGTGGCAAGGGTGCTGATGGTGTCCCTGGTAAAGATGGCATCCGTGGTATGACCGGACCAATTGGACCTCCTGGACCTGCTGGAGCTCCTGGTGACAAGGGAGAGACTGGTGCTCCTGGACTTGTTGGACCTAATGGTGCCCGTGGACCACCTGGTGAGCGTGGAGAGACTGGTCCTCCCGGACCCGCTGGATTTGCTGGACCTCCTGGTGCCGATGGTCTGCCTGGTGCCAAGGGAGAGGCTGGAGACAATGGTGCTAAGGGTGATGCTGGTGCTCCAGGACCTGCCGGAGCAACTGGTGCCCCTGGACCTCAGGGTCCTGTTGGTGCTACTGGACCCAAGGGTGCCCGTGGTGCTGCTGGTCCTCCTgGTGCAACTGGCTTCCCTGGTGCTGCTGGCCGAGTTGGACCTCCCGGCCCTGCTGGAAACGCTGGACCCACAGGAGCTCCTGGAGTCCCTGGTAAGGAGGGCCAGAAAGGTAACCGTGGTGAGACTGGACCTTCTGGTCGCACTGGTGAAGTTGGTGCTGCTGGACCACCTGGTGCCCCTGGTGAGAAAGGAAATCCTGGAGCTGAGGGTGCTACCGGCCCCGCTGGTATCCCTGGATCTCAAGGTATCGCTGGTCAGCGTGGTATTGTTGGTCTTCCTGGTCAGAGAGGCGAGCGTGGTTTCCCTGGTCTCCCCGGCCCATCTGGAGAGCCTGGCAAACAAGGACCATCTGGTCCCTCTGGTGAGCGTGGACCTCCTGGACCCATGGGACCCCCTGGATTGGCTGGACCTCCTGGTGAGCCTGGTCGTGAGGGTACTCCAGGTAATGAGGGCTCTGCTGGACGTGATGGTGCCGCTGGCCCCAAGGGTGACCGTGGTGAGACTGGCTCTGCTGGTACTCCCGGTGCTCCTGGTCCTCCTGGTGCTCCTGGACCCATTGGACCTGCTGGAAAGACTGGTGATCGTGGAGAGTCTgGCCCTGCTGGTCCTGCCGGTGCTGTTGGCCCTGCTGGTCCCCGTGGACCCTCTGGACCCGCTGGAGCTCGTGGAGACAAGGGTGAGACTGGTGAGGCTGGTGAGAGAGGCATGAAGGGACATAGAGGATTTACCGGCATGCAGGGACCCCCAGGACCTCCTGGACCCTCTGGAGAGCCTGGACCTGCTGGAGCTTCTGGACCTGGTGGATCTAGAGGACCTGCTGGATCTGCTGGACCCGCTGGTAAGGATGGTATGAGCGGACTTCCTGGACCCATTGGACCTCCTGGACCCCGTGGTCGCAGTGGAGAAATTGGACCAGCTGGACCTCCTGGACCTCCCGGACTCCCTGGACCTCCTGGACCCTCTGGTGGTGGATTTGATATCGGCTTCATTGCCCAGCCACAGGAGAAGGCCCCTGATCCCTTCCGCTCATACCGTGCCGACGATGCCAATGTCATGCGCGACCGTGACCTCGAGGTTGACACCACCCTCAAGTCCCTGAGCCAACAGATCGAGAGCATCATCAGCCCAGATGGCACCAAGAAGAATCCTGCTCGCACTTGCCGTGACCTGAAGATGTGCCACCCAGACTGGAAGAGCGGCGAGTACTGGATTGACCCTGACCAGGGCTGCAACCAGGATGCCATCAAGGTCTACTGCAACATGGAAACTGGAGAGACCTGCGTCTACCCAGCTGAGTCCTCCATTCCCAAGAAGAACTGGTACACAAGCAAGAACATCAAGGAGAAGAAGCATGTCTGGTTCGGAGAGGCCATGACCGATGGCTTCCAGTTCGAGTATGGCAGCGAGGGCTCCAAGGCTGAGGATGTCAACATTCAGCTCACCTTCCTGCGCCTCATGTCCACTGAGGCCTCCCAGAATATCACATACCACTGCAAGAACAGCATTGCATACATGGACCAGGCTTCTGGCAACCTGAAGAAGGCTCTTCTGCTGCAGGGCTCCAACGAGATTGAGATCAGAGCAGAGGGCAACAGCCGCTTCACATACAGTGTCACTGAGGATGGTTGCACGTCGCACACCGGTGCATGGGGCAAGACAGTCATCGactacaaaacaacaaaaacatcccGTCTGCCTATTATTGACATCGCCCCTATGGACGTTGGTGCACCTAATCAGGAATTTGGCATTGAAGTTGGCCCAGTCTGCTTCttgtaaaaaagaaatctgGACTTGAGattgtttgtgtgcgtgtgtgtttttttctagcAATCATCTCTCTAAAATCTTTTCTATGCATTAAAGTCAAACCCTAGAATTCAATTTGGCTGTCCAAATGGTCCACTTGCTTAGACCTGCGCTTCAGAAGACAGTGGTTGTGTGTTATCAGGCTTTTTTTGGACCACTATTTTGTCACCATCCACACTGAGGATACTTTAGAAGACTCATTTGTTTCACTGGcaacaagaaaataatatatacttataaagTGTAAAATCCCCCTGGAGTTTTAAAGAAACATCACTGATgcaagtgacttttttttcaaccaCTGAGGAAGGACAATGAAAGAGCAAAACCAAATGCTTTGTACCATGTTCAGGtgttaaataaatctgtaaaatgaca

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0030278 regulation of ossification biological_process
GO:0033334 fin morphogenesis biological_process
GO:0033339 pectoral fin development biological_process
GO:0005581 collagen trimer cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06236 COL1A; collagen type I alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234902.1 True 4888 mRNA 0.59 51 22434373 22449649

Neighbor

gene id symbol gene type direction distance location
gngt2a NA coding upstream 46888 22384731 ~ 22387485 (+)
LOC122341813 NA coding upstream 51586 22374082 ~ 22382787 (+)
LOC122333458 NA coding upstream 62701 22365276 ~ 22371672 (+)
LOC122332454 LOC107667744,LOC107582924 coding upstream 71971 22356954 ~ 22362402 (+)
nags LOC107585096,LOC107662425,LOC107740635,LOC102299446 coding upstream 77854 22349117 ~ 22356519 (+)
ppp1r9ba ppp1r9b,ppp1r9ba,LOC107740632,LOC107717206,LOC107667750,LOC107582927 coding downstream 5753 22455402 ~ 22490790 (+)
nr1d1 LOC107585045,LOC107740628,LOC107662394,LOC107582883,LOC107667757 coding downstream 119318 22568967 ~ 22575990 (+)
hoxb13a hoxb13a,LOC107687788,LOC107662424,LOC107585093,LOC107717198,LOC107740673,LOC107582955 coding downstream 223827 22673476 ~ 22675120 (+)
hoxb10a hoxb10a,LOC107662435,LOC107740623,LOC107585092 coding downstream 235364 22685013 ~ 22689691 (+)
hoxb9a hoxb9a,LOC107585091,LOC107662432,LOC107717219,LOC107687790,LOC107582956 coding downstream 241529 22691178 ~ 22699171 (+)
LOC122341843 NA non-coding upstream 344442 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 699951 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 797803 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 798294 21635744 ~ 21636079 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding upstream 1051249 21381808 ~ 21383124 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 61779 22511428 ~ 22672911 (+)
G22554 ddx5,LOC107695114 non-coding downstream 490598 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 639824 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 651295 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 664629 23114278 ~ 23116840 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 98146 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 408462 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 457708 21975252 ~ 21976665 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other upstream 700246 21637743 ~ 21734127 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other upstream 1020087 21295702 ~ 21414286 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 79340 22528989 ~ 22530060 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other downstream 96509 22546158 ~ 22547208 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 272373 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 315998 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 449684 22899333 ~ 22908135 (+)

Expression


Co-expression Network