zgc:86896 (zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990)


Basic Information

Item Value
gene id zgc:86896
gene name zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14057644 ~ 14062454 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234944.1
CTTCTTACAACAGCTCAGCCTCATTCGTGTCGACTGCCCAGAGTCCACGAACATAGCCTTCCAACAACTCTCCAGCACAAGGATATAGGAAATATCACTATCTAgcaaaagagaggaagagattaAGTCACATTCATTTTCCTGATTGCATGCTCTTCTTAACATCTGCGGTGCATTCCAGGGTTTCCCTGTTGAAACATGTCCCTCTATAGCTTTGGATTGGAGCCTCTGTCTTGTCATGCCTGGAACAAGGACCGGACACaaattgCAATAAGTCCCAACAGCAACATTGTGCACATTTaccaaaagaaaggaaaggaatGGACTAAGATTCATGAACTGACGGAACACAGTGGGCGAATCACAGggATTGACTGGGCCCCAGAGTCCAACCGTATAGTGACCTGTGCCTCAGATAGGAATGCCTATGTATGGACACTTAAGGATGGGGTTTGGAAGCCGACTTTGGTCCTGGTTCGCATTAATCGAGCTGCCACATGTGTCAAGTGGTCACCACTCGAGAACAAGTTTGCTCTTGGAAGTGGGGCTAAACTTATTTCAGTATGCTACTTTGAAAAAGAGAATGACTGGTGGCTAAGTAAGCATATCAAGAAACCCATTAACTCCACTGTTCTGAGTCTAGACTGGCATCCCAATAATGTTCTGCTGGCAGCTGGCTCAGCTGATCTGAACTGCAGAATTTTTTCTGCATATATCAAGGACATCGAGGACAAGCCTGGACCAACACCCTGGGGGTCGAAAATGCCCTTTGGAGAGGTGCTTCTGGAGTATAAAGAGTGTGGCGGCTGGGTACACAGCGTCTGTTTCTCCCCGTCTGGTGATGCTCTGGCCTGGGTTAGCCACAACAGCGCCATCAGTGTAGCAGATGCCACACAGGGAAAGGAGGTTACTCAGCTGACAACAGGACATCTTCCTTTGCTGAGCGTGCTGTATGTGAGTGAGACAGAGATTGTAGCTGCGGGCCACGACTGTTGCCCTTATCAGTTCTCATACAAGGGTCTTGGATGCCTGGAGTTTGTGAAGAAAGTGGACATTCCCAAGCAGAGCTCCAAGGGTAACATGTCAGCCATGCAGCATTTCCGTAATTTGGACAAAAAAGCAACTACTGAGGAGGAGGAAACTGGGTTGGGCAGTCTGCATCAGAACAGCATCACTCAGCTGTGTACTCTGGAAGGGCCGAAAGCCAAGGTGGAGAAATTCAGCAGTGTGGGCTTAGATGGTGCCATGGTTGTCTGGGATTTTAAGcaCTGAAACACCATGGGATCTGGAAAGAGcagaaaacaacaataataattgagGATCATCTTTataagtttgtttgtttctcagaaACCTCTTAGCCTTTACTACAAAAGTTACACATTAAAGTGATTAAAGCCGGttgattttattatgattaatatGATATTTCATTGCTATGGAATGTTAGATGGCCGATCCCAAATGTGTGGTATGCAGTAGTTTTTGTCATGCAGTATTAATTCATCTTAACACTGAACCCAGGTTTTCGAAAAtaagcaaacataaaaatgattatttagcACCAAAAAGAGAATTAACAGTGTATGCAATgactataataattttttttttacaccaaatGTGCTgctattgtaataaaaatttagatttgaccaaaaaaaaaaaaaaatcaacaaacaaataaagaaatcattctttaaaaagttGGGTGAATTCGTTTCGCTCTCTCTTGTTGCAGTACTGCAGAAGATTGTTAGATACAAATAACTATGAGTGAGCCATCAGAGCCGATGTAGTGAGGAGAAAGTTCAAAGCggaaataagaataaaacattCCAAAATTACTTGACTGTATTACAGTTACGCATTTTGTAatgaaaagacattaaaattgtgaaaaactgagagacacaaataaaatttgtgttatgtttctga
>XM_043234945.1
CTGCAGCCCTTCTTACAACAGCTCAGCCTCATTCGTGTCGACTGCCCAGAGTCCACGAACATAGCCTTCCAACAACTCTCCAGCACAAGGATATAGGAAATATCACTATCTAgcaaaagagaggaagagattaAGGGTTTCCCTGTTGAAACATGTCCCTCTATAGCTTTGGATTGGAGCCTCTGTCTTGTCATGCCTGGAACAAGGACCGGACACaaattgCAATAAGTCCCAACAGCAACATTGTGCACATTTaccaaaagaaaggaaaggaatGGACTAAGATTCATGAACTGACGGAACACAGTGGGCGAATCACAGggATTGACTGGGCCCCAGAGTCCAACCGTATAGTGACCTGTGCCTCAGATAGGAATGCCTATGTATGGACACTTAAGGATGGGGTTTGGAAGCCGACTTTGGTCCTGGTTCGCATTAATCGAGCTGCCACATGTGTCAAGTGGTCACCACTCGAGAACAAGTTTGCTCTTGGAAGTGGGGCTAAACTTATTTCAGTATGCTACTTTGAAAAAGAGAATGACTGGTGGCTAAGTAAGCATATCAAGAAACCCATTAACTCCACTGTTCTGAGTCTAGACTGGCATCCCAATAATGTTCTGCTGGCAGCTGGCTCAGCTGATCTGAACTGCAGAATTTTTTCTGCATATATCAAGGACATCGAGGACAAGCCTGGACCAACACCCTGGGGGTCGAAAATGCCCTTTGGAGAGGTGCTTCTGGAGTATAAAGAGTGTGGCGGCTGGGTACACAGCGTCTGTTTCTCCCCGTCTGGTGATGCTCTGGCCTGGGTTAGCCACAACAGCGCCATCAGTGTAGCAGATGCCACACAGGGAAAGGAGGTTACTCAGCTGACAACAGGACATCTTCCTTTGCTGAGCGTGCTGTATGTGAGTGAGACAGAGATTGTAGCTGCGGGCCACGACTGTTGCCCTTATCAGTTCTCATACAAGGGTCTTGGATGCCTGGAGTTTGTGAAGAAAGTGGACATTCCCAAGCAGAGCTCCAAGGGTAACATGTCAGCCATGCAGCATTTCCGTAATTTGGACAAAAAAGCAACTACTGAGGAGGAGGAAACTGGGTTGGGCAGTCTGCATCAGAACAGCATCACTCAGCTGTGTACTCTGGAAGGGCCGAAAGCCAAGGTGGAGAAATTCAGCAGTGTGGGCTTAGATGGTGCCATGGTTGTCTGGGATTTTAAGcaCTGAAACACCATGGGATCTGGAAAGAGcagaaaacaacaataataattgagGATCATCTTTataagtttgtttgtttctcagaaACCTCTTAGCCTTTACTACAAAAGTTACACATTAAAGTGATTAAAGCCGGttgattttattatgattaatatGATATTTCATTGCTATGGAATGTTAGATGGCCGATCCCAAATGTGTGGTATGCAGTAGTTTTTGTCATGCAGTATTAATTCATCTTAACACTGAACCCAGGTTTTCGAAAAtaagcaaacataaaaatgattatttagcACCAAAAAGAGAATTAACAGTGTATGCAATgactataataattttttttttacaccaaatGTGCTgctattgtaataaaaatttagatttgaccaaaaaaaaaaaaaaatcaacaaacaaataaagaaatcattctttaaaaagttGGGTGAATTCGTTTCGCTCTCTCTTGTTGCAGTACTGCAGAAGATTGTTAGATACAAATAACTATGAGTGAGCCATCAGAGCCGATGTAGTGAGGAGAAAGTTCAAAGCggaaataagaataaaacattCCAAAATTACTTGACTGTATTACAGTTACGCATTTTGTAatgaaaagacattaaaattgtgaaaaactgagagacacaaataaaatttgtgttatgtttctga

Function

symbol description
zgc:86896 Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton and cytoplasm. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234944.1 True 1941 mRNA 0.42 10 14057652 14062454
XM_043234945.1 False 1895 mRNA 0.42 10 14057644 14062454

Neighbor

gene id symbol gene type direction distance location
dus1l dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391 coding upstream 21619 14029505 ~ 14036025 (+)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding upstream 70872 13982254 ~ 13986772 (+)
trnat-cgu NA coding upstream 143950 13913623 ~ 13913694 (+)
crlf3 crlf3,LOC107688102,LOC107654479,LOC107721514,LOC107719981 coding upstream 155055 13888940 ~ 13902589 (+)
traf7 traf7,LOC107601260,LOC107719978,LOC107590399,LOC107654453,LOC107721517 coding upstream 249462 13796853 ~ 13808182 (+)
wipi1 wipi1,LOC107721503,LOC107654490,LOC107688112,LOC107590389,LOC107719990 coding downstream 819 14063273 ~ 14073404 (+)
slc16a6b slc16a6b,LOC107721502,LOC107719991,LOC107688113,LOC107654485,LOC107590388 coding downstream 13748 14076202 ~ 14084506 (+)
rgs9a rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993 coding downstream 39561 14102015 ~ 14111321 (+)
si:dkeyp-72e1.9 si:dkeyp-72e1.9,LOC107721498,LOC107601283,LOC107688120,LOC107654504 coding downstream 95270 14157724 ~ 14195322 (+)
pdxdc1 LOC107719998,LOC107721496,LOC107654505 coding downstream 147273 14209727 ~ 14221810 (+)
G19963 NA non-coding upstream 114153 13940616 ~ 13943491 (+)
LOC122342149 NA non-coding upstream 137375 13913926 ~ 13920269 (+)
G19891 NA non-coding upstream 239422 13815353 ~ 13818222 (+)
G19890 NA non-coding upstream 265089 13787833 ~ 13792555 (+)
G19798 NA non-coding upstream 615495 13441686 ~ 13442149 (+)
G20009 NA non-coding downstream 37719 14100173 ~ 14101904 (+)
G20057 NA non-coding downstream 86010 14148464 ~ 14150958 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding downstream 240696 14303150 ~ 14304893 (+)
G20146 NA non-coding downstream 317170 14379624 ~ 14457906 (+)
G20166 NA non-coding downstream 554808 14617262 ~ 14618834 (+)
G19973 NA other upstream 4612 14049490 ~ 14053032 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other upstream 55266 13995961 ~ 14002378 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 346779 13698537 ~ 13710865 (+)
si:dkey-204f11.64 LOC105898698 other upstream 942788 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 1069731 12835381 ~ 12987913 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 56013 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 57731 14120185 ~ 14123128 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 193036 14255490 ~ 14273309 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other downstream 472725 14535179 ~ 14615408 (+)
G20167 NA other downstream 556540 14618994 ~ 14622858 (+)

Expression


Co-expression Network