dnm2a (dnm2a,LOC107661823,LOC107602725)


Basic Information

Item Value
gene id dnm2a
gene name dnm2a,LOC107661823,LOC107602725
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6796786 ~ 6833224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234964.1
ACTCGCGTCACCGGTGGAGGTCGGATGTCGCCTGACCGGATGATAGCgagaagttttgttttgtgagtttACGAATGATTGATCCTCAGATCAGTGCACGGATCTTAACGTATGCGCCCTAATACGCGTTATCTGCCTGTCAGCGAGTGTTTGATCAGTTGTTTGTCTTTGACGGACTGAACTGGAAGTGTTTGAAGGGTGGAAACTGAACACTTGGAAGTAACCCGAGCGCCCTGCTGCCGCGAGCCCGTTCCTGCGCGCTGAGAGACGGTCAGAAACCATGGGCAACCGGGGGATGGAGGATTTGATCCCCCTGATCAATAAACTCCAAGATGCTTTCAGTTCCATTGGCCAAAGTTGTAACTTGGATCTGCCGCAGATAGCCGTGGTTGGAGGACAGAGCGCCGGAAAAAGCTCGGTGCTGGAAAATTTCGTCGGCAGgGATTTCCTTCCCAGAGGCTCTGGCATCGTCACCCGCAGGCCTCTCATTCTGCAGCTAGTTAACAACAAAGCTGAATATGCGGAGTTCTTGCACTGCAAAGGGAGGAAGTTCGTGGACTTTGATGAAGTCCGGCAGGAAATTGAAGCAGAGACGGACAGGATTACGGGGTCCAATAAGGGCATCTCTCCTATTCCCATCAACCTAAGGGTTTACTCCCCGCACGTGTTGAATCTGACTCTCATCGATTTGCCGGGAATGACTAAGGTTGCCGTGGGCGACCAGCCGGTAGACATCGAGCACCAGATTCGAGACATGATTATGCAGTTCATCACTAGGGAAAGCTGCCTGATCCTCGCCGTCACTCCGGCCAACACCGACTTGGCCAACTCCGACGCTCTCAAAGTGGCTAAGGAAGTGGACCCTCAAGGTTTGCGTACCATCGGTGTGATTACTAAACTGGATCTAATGGACGAGGGTACAGACGCCCGGGATATCCTGGAAAATAAACTCTTACCACTGCGTAGAGGTTACATTGGCGTAGTGAACCGAAGTCAGAAAGACATAGATGGCAGGAAGGACATTCGTGCTGCACTGGCAGCAGAAAGGAAGTTCTTCTTGTCCCACCCCAGTTACAGACACATGGCTGAACGAATGGGAACACCACACTTGCAGAAGGCCCTCAACCAGcaattgACCAACCACATCCGGGACACGCTACCCGGCCTGCGCAGCAAACTCCAGTCTCAGCTTCTCTCTCTTGAAAAAGAGGTGGAAGAATACAAGAACTTCCGCCCGGATGACCCTACGCGAAAAACCAAGGCCTTGCTACAGATGGTCCAGCAGTTTGGTGTGGACTTCGAGAAGTGCATCGAGGGGTCCGGAGACCAGGTGGACACGGCCGAGCTGTCCGGAGGTGCTAGGATTAACCGAATTTTCCACGAGCGCTTCCCCTTCGAGCTGGTCAAGattGTGTTCGATGAGAAGGAGCTCCGGCGAGAGATCAGTCATGCCATTAAGAACGTCCATGGTGTCAGAACTGGGCTGTTCACTCCAGATCTGGCGTTTGAAGCCATCGTGAAAAAGCAGATCATTAAGCTGAAAGAGCCCTGTCTGAAATGTATCGATCTGGTTATTCAAGAGCTCATCAACACAGTCAGGCAGTGCACCAACAAGCTAGGCTCTTACCCCAGACTGCGAGAAGAGACCGAGAGGATTGTCACTACTTacgtcagagagagagaaggcaaGACCAAGGACCAGgtCCTTTTGCTGATTGACGTTGAGCTGTCATACATTAACACCAACCACGAGGACTTCATTGGATTTGCAAACGCCCAGCAAAGGAATATCGTCAACAAGAAGAGGGCCATTCCCAACCAGGGTGAAATACTGGTGATCCGCAAAGGCTGGCTAACCCTCAACATCAGCATTATGAAGGGCGGCTCCAAAGAGTACTGGTTCGTCCTGACGGCCGAATCACTATCCTGGTACAAGGACGAGGAGgaaaaagagaagaaatacATGCTTCCTCTGGACAACCTAAAGCTCAGAGATGTAGAGAAAGGCTTCATGTCAACTAAGCATATTTTTGCGATCTTCAACACTGAGCAAAGGAACGTCTATAAGGACTTGCGTCAGATCGAGCTGGCCTGTGATTCGCAGGAGGACATGGACAGCTGGAAAGCCTCTTTTCTCCGAGCAGGAGTTTATCCTGAGAAAGATCAGgtggagTCAGAAGAGGCTGCTCCCGCCGACACCTTCTCCATGGACCCTCAGCTGGAGAGGCAGGTGGAGACCATCCGTAACCTGGTGGACTCTTACATTGGTATCGTCAACAAGACCATCAGAGACCTCATGCCCAAGACTATCATGCACCTCATGATCAACAGCGCTAAAGACTTCATCCACTCGGAGCTGTTGGCGTACCTGTACTCCTCAGGAGATCAGAACAGTCTGATGGAGGAGTCCGCTGACCAGGCCCAGCGCAGAGATGAGATGCTGCGTATGTACCACGCCATAAAAGAGGCCCTCAACATCATCGGTGACATCAGCACCAGCACTGTGTCCACTCCTGTGCCTCCGCCCGTCAACGATACCTGGATTCCAGAGACTAGCCCCACCCCCCAGCGCAGACCGCCTACATCGGCCCCCCCCAGCAGGCCTCCAGCAGTGCGAGGTCCAACACCAGGCCCGCCCTCTCTTAACCCCACCCCTTTTGCAGCCCCACCCATTCCCTCTCGCCCAGGCCAGCCCATTAATGCCTACAGCAACAGCAGCCAGGACCCTTTCAGTGCCCCTCAGATCCTCTCCCGTCCCGCCCGCGTCCCTCCAGGCATCCCCAGCAGAAGACCCCCTGGCGCTCCCAACCGGCCCACCATTATCCGCCCCGCCGAGCCCTCCCTGCTAGACTAGACCCGTGCGCTGGCCACCGTAGgctgacagaaagaaagaaagagagagagagagaggaagggctGGAGAACTGCACTGAAAACATGTGCATGTGTTTCTACACATACAGCCTGACCAATAGACCTAAATAATCCACTCAAACTGTCCTCTGATCAGCGCTGCTAATCTCATCCTTACTTTTAAAGCCCAGAGGTCTAAATTAAGCACATAAATATTCAGTTaagattattattgttgttattattttgtagaGTGAACTAAAGGGTGTAGTGGCCTCCAACTTTCAGTCATTTCATCACTCACATAGGTCAGTTGACCACCAGGGGGTATCCTACTCAACTTGTAGACGAACCAACATTAGCCTCCTCTCTGACTAGTGGTTTAACGTCGGATAAGATGTATACAAGCACTGTGCAAGCTAGTCGCTGTTAAACTAGCCTCTTCTTCCGGTTCTTGGGTAACTTAAGGGTTGTCGAAGACTCTTTCTTGTTATAGACACACTTcttcatgtgtttttgttttcattctgtgttttctctACTCTCTAACTTGATATGCTGAAATAAGACACCACGACCGTTGTTGTTATTGCTGTGTAGGACtggtttctttgtttttcatgttccaTTGGCCGTTTATGTTTGAGATCCTTCAAAACGGCACTTAGCACCAAGCGACTGTTAATTACGACTCGATAGCAGCTAACCGATCAGAGAAATGCAAACAtacaagtcaaaaaaaaaaaaaaaaaaaaaaaagatgttgacGAGCAGCATCCTGTTTCTTTTGCGTTCGGGAAATTTGGTTCTTGAAAAGCACTTCTTGTTCTCGAGTGTTGGGAATTTCTTAGATAGTCAGAAGAGAAGTTGCCGTTTGTATGCAAATCTCTGTAACGACctgtttatacaaataataatctGTGTATGTGAATTTAATCCTGGAAAGCACGGTAACCACTCGCGACGGGCCCCGACCCGTCAGAGCTCAGAGCTCAGGTAACATCCGACTCCAAATCACGTAAACGTTTACGCTAGCTTAGCGCTCCGATCGTTGTAACTTAAATTAATCTGCAAGGCGTTTTTATTTTCGCATTCAGGGATAGTGAGGGCCGGGGGGGAGGGTTAATGAGCGGGAAAAACATCGGGGCGCTACAGGAAGTTGGGAATGCTTTCAGACACGGGGTCACTGAACATGGTACATGCAGGTGCATTTGGGGTCCGGGGGCGTTTGCTTTATGGAATCAATCCGCTCTTGCCTACAAAGACACAGGGAACTTTCTGAACGCAAACAGTGAACCTTTAACGTAGAGATCATAGATGTACTAACACGCATATTTCCGagtgtattatttataaccTGGGCATTTGTCTTTGTGCTGATTTGCATCTTTCACAAACCGTTTGCCTCCGAGTAGAAAGACAGACGCTCTTCGATTCATGCCCCTTCGGTTGCGTTAACGGTAGTTGAACAGAATTCAGAGTGAACGCGGTCCAGCTGTTGATCCTGACTTGATTGCAGAATCTTTCGACGTTTGCTTTTATTGATGTGCGTGCGAGGAAACGGGCTGCGACGAATTTCGTTTTCTTGATTAACTTGAGGATAAGAATAGAGATTTGGCGTAAGTGGGAGCGGGTCTTCGATTTTTAGCATCGATTCGCCTGTAAATAATCGAAGGCTTGGAGTCGGACTTGAGGTGAAACTTAAAAATTAGCTGCAGATTTCAGGGCTGAACGCTCTTTAATCACTCCTCTGTGTTATGGCTACAGTGATGGCAACCGCTGCTCCTCCTTCATCCAGTTCAAGGTTTGAATTAAAATCGCATCCAGCCGTATGTTTTCCGATTTCAAATTACTTCAACATCTGCTAAGAACTGGATAAAGCCCAGATCACTGCAGCCATAACTTTTCCTCTGGTCTTTGGCTGTGGTGACCCCGATCCCCGTCTCTCCCTCTAATAATTGTGTCCTTTTGTATGGAGTGAGGGACGGAGGACATATTTAGCAtcctttttttatgcttttggaATAACAAATCATTGTCAAGTGCCTGTGTAGCAATTAAAATGGACTTGGAGCAAAATGCACAATGAGAATTGGAAGtgagatgatgataataaaaggTGTTGTGTATAATAAAGATCTGGTGCTCTGGT

Function

symbol description
dnm2a Predicted to enable GTPase activity and microtubule binding activity. Acts upstream of or within several processes, including chordate embryonic development; convergent extension; and somite development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including microtubule; plasma membrane; and synapse. Is expressed in several structures, including central nervous system; liver; otic vesicle; paraxial mesoderm; and pericardial region. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate B; centronuclear myopathy 1; and lethal congenital contracture syndrome. Orthologous to human DNM2 (dynamin 2).

NR:

description
dynamin-2 isoform X13

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061061 muscle structure development biological_process
GO:0060026 convergent extension biological_process
GO:0009790 embryo development biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K23484 DNM2; dynamin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234964.1 True 5005 mRNA 0.49 23 6796786 6833224

Neighbor

gene id symbol gene type direction distance location
trim35-12 LOC107670464,LOC107602713,LOC107599344,LOC107728678,LOC107711176,LOC107661834 coding upstream 112588 6679181 ~ 6684198 (+)
gipc1 gipc1,LOC107670535,LOC107728688,LOC107599306,LOC107661840,LOC107602717,LOC107711205 coding upstream 118069 6670199 ~ 6678717 (+)
dnajb1a dnajb1a,LOC107711204,LOC107602716,LOC107670512,LOC107728686,LOC107599305,LOC108429690,LOC108257372 coding upstream 126777 6665977 ~ 6670009 (+)
samd1a samd1a,LOC107728687,LOC107711202,LOC107661838,LOC107599303,LOC107670528,LOC107602714 coding upstream 140170 6649673 ~ 6656616 (+)
prkacaa prkacaa,kapca,LOC107599301,LOC107602709,LOC107670487,LOC107661836,LOC108429687,LOC105910964,LOC107378291,LOC106606839,LOC103367163,LOC107728680 coding upstream 149885 6630997 ~ 6646901 (+)
tnfsf14 LOC107744984,LOC107661863,LOC107711150,LOC107602699 coding downstream 7795 6841019 ~ 6846641 (+)
ppap2d ppap2d,LOC107661820,LOC107711217,LOC107602726,LOC107744960,LOC107670514,LOC107599313 coding downstream 29185 6862409 ~ 6888805 (+)
si:ch211-207b24.4 NA coding downstream 315698 7148922 ~ 7157297 (+)
LOC122329403 fn3krp,LOC107670452,LOC104918611,LOC107599346,LOC107744985 coding downstream 327530 7160754 ~ 7164555 (+)
tbcd tbcd coding downstream 333310 7166534 ~ 7197688 (+)
G17663 NA non-coding upstream 91381 6705195 ~ 6705405 (+)
G17662 NA non-coding upstream 92084 6704414 ~ 6704702 (+)
G17630 NA non-coding upstream 171490 6623688 ~ 6625296 (+)
G17584 NA non-coding upstream 321167 6475099 ~ 6475619 (+)
G17560 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 359818 6436732 ~ 6436968 (+)
G17683 NA non-coding downstream 13714 6846938 ~ 6847606 (+)
G17699 NA non-coding downstream 69522 6902746 ~ 6903161 (+)
G17704 NA non-coding downstream 88972 6922196 ~ 6976265 (+)
G17791 NA non-coding downstream 361558 7194782 ~ 7266722 (+)
G17806 NA non-coding downstream 432119 7265343 ~ 7282946 (+)
G17590 NA other upstream 240036 6504915 ~ 6556750 (+)
LOC122341437 LOC107718607,LOC107653460 other upstream 601748 6186808 ~ 6195038 (+)
fbxw9 fbxw9,LOC107661857 other upstream 693160 6098201 ~ 6103626 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other upstream 833898 5957403 ~ 5962888 (+)
G17302 NA other upstream 1198554 5597099 ~ 5598232 (+)
LOC122331592 LOC107744988 other downstream 750130 7583354 ~ 7591526 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other downstream 822807 7656031 ~ 7725519 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other downstream 975019 7808243 ~ 7821078 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other downstream 1005732 7838956 ~ 7841669 (+)
LOC122331768 LOC107710248 other downstream 1116537 7949761 ~ 7950417 (+)

Expression


Co-expression Network