arf2a (arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546)


Basic Information

Item Value
gene id arf2a
gene name arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14573762 ~ 14581763 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234967.1
GAGGCGGGGCCCATGACGCCACTGTCCTCGGACTAGAGAAAGacgccattttgttttttagcgGTGAGGAGGAAAACCGGAAAAATTGTAGCGAAACTGCACCAAAAGATCCGCCACCATGGGGAATATGTTTGCAGGCCTCTTTAAGAATCTCTTTGGGAAGAAAGAGATGAGAATTCTGATGGTGGGCTTGGATGCTGCTGGAAAGACCACCATCCTGTACAAACTGAAACTGGGAGAAATAGTCACCACCATCCCCACTATCGGTTTTAATGTTGAGACGGTAGAGTATAAGAACATCAGCTTCACTGTGTGGGATGTGGGTGGTCAGGATAAGATCCGGCCGCTTTGGAGGCACTATTTCCAGAACACACAAGGCCTGATCTTTGTTGTGGACAGTAACGATAGGGAGCGAGTGAATGAGGCGAGGGAAGAGTTGACGAGGATGCTGGCGGAGGACGAGTTGAGAGATGCTGTGCTGCTCGTCTTTGCCAACAAACAGGACCTGCCCAATGCGATGAACGCAGCTGAGATCACAGATAAGCTGGGCCTTCATTCCCTGCGTCATCGTAACTGGTACATCCAGGCCACCTGCGCCACCAGTGGGGATGGCCTGTATGAAGGCCTCGACTGGCTCTCCAACCAGCTCAAAAACGCTAAATGATCCATTCCACCCTCTCTCCTCTTCTGTCAGcgctgtgtgtgtatgaatgtgtgtgaagGGTGACAGCACTGGTTTCAGTCTTGCCCGGTTGCCCAGTTTATCCATTTCTTTCTCTTGTCCAGTCTTGTGTATGTCAGAGACTCTGCCCAGTGCTGTCTATAATACACAtgcaaggtgtgtgtgtgtgtgtgtgtgtgtgtttacgtgtgtgtgtgaactgagGGTGGGAGTAGCCTTGCTGTGCCTTTCAAAATAGACACTCAGTGTACAGCAcggttctctctttctctctcttctccctcCTCTCCCCGTGGTTTTCTGCACGCAAAGAATGACCCAGGatgttaaatatttctgttaccTAATACACTGAAACCAGACTATAGGCCTGATTTGTCCCTTTCCCAATGTTTAAAGCAATCACGCATGTCTAAAATGTTACAAGGTGTGAGTTGCCATCCTTTGACCCCACATTTGATAAAACTCATTGTAACCTGCATCAggttgggaaaaaaagaaggaaaaaatcAGACAATAAAGTGACATTTCTTTTCCATCCATTCTTCTTCGCGTTATTtgaaaatcattctaatgcttTCAGGTACGTCACATGATGCTTTCCATGTGAACACCAGCCCGCTTTCCCTACTGCTGTCCTCAGTCAAGCGCATTCAAGCACAAGCCTGTGAAACCTTTCGTTTACACAAAGTCAGTTTGTACGGCGTCTTAAACTATTGCCTGTGGGGAAGAAATCATTTGACCCTGTGTGTctgctttgttgttttgttggaTCTCGCTGATCATCCAATCAGATCCCAGGCACTAACTAACAGCCTTACATGTGTTTTGATTGCCATGTAAGAGACGACTGCAGAAGTGATAAGCATTTGTGGGAGTACGGAGGGAGTGAGCGCCTTCTGCTGGAGCAGCGAGGCCTTTTGCGAGCTGCTCCCACTCCAGTGATTCttctttagctttttttttttttttttttttttttttttttttttttttttttaattgtcgtgatttacttttttttttcgttattATGGTCTCTTTCAAGTTGTCCTGCATCATATGTACAGTCAGAATCTCACGAGTGATTTCAGGTGAGGCCACTAAGGGCTTTTTGAGATGCATTTATTCTCCCAATTGTAATCTAAAATTGATGATGCCTGATAGATAGATCCAGGCACATCTGTGACTGATCCAGAGTCACCATTGAGCTTCAGTGGTTCCTCGGTTGGTATGAGAATTGCAGAACAGCTGCAGGTCAAAATGCAAACTCCTCCAGCCAGCTTTAGTCCTCCCTCTTTCATTTCTTACATTCTTTCCTCCTTCCTTGTTTCTCTTCATCGGTCGGTGGCTGCTCTACCTGATGCACCAGTTCATTTTGAAACACGTCACTGATAGAATCAAGCACCAGCAGAGAGATGTTCGCTTTGAGAACGTGTACGCGCATCTTGTAATCCAAAACTGACAAACacgttttgttttctttcatattcCAAAGGCAACTGCAGTGTCGAATACAGCATTGAAGATTGTGCTGTAATGATCGCAGTGGTCCTAACCCTGTACTGACCTCTCACAAGGGAATAGGTGACGTTTCACCGCGTGTGAAACTTGATAGcaacatgaatgcattttatttgtttgttttcttccccCTTTGTCTGTCACCAAAATTCATGTTTCATAActctaataatgttttttggcCTTTTAGTTATTCTGATACAGATCTACTGTAGTAGataaagttttatttgaataagCATCATCTATGACAAGTAATTAAAGTGTATGagtatgaaaatgtatttagcttGCAGATTTCATTTAGCTATCCTATGTTCAGATGTGAAGCTTTAATTTCgaaaattctgtaaaataatagGAGCAAGGAACGTGTgcacatgtttgttttcttttactgaaatggtttttgtttttagctttttttttttttttaaacccatcTTGTAACATCTGATAAATGCACTATAATAAAGAGATCTCTATTACA

Function

symbol description
arf2b Predicted to enable GTP binding activity. Predicted to be involved in endocytic recycling and intracellular protein transport. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).
arf2a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane.

NR:

description
PREDICTED: ADP-ribosylation factor 1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234967.1 True 2696 mRNA 0.43 5 14573762 14581763

Neighbor

gene id symbol gene type direction distance location
LOC122341419 LOC107601299,LOC107721482,LOC107654457,LOC107688136,LOC107720081,LOC107590425 coding downstream 17677 14462247 ~ 14556085 (-)
LOC122341422 LOC107654457,LOC107601299,LOC107720081,LOC107688136,LOC107721482 coding downstream 111515 14459822 ~ 14462247 (-)
tubg1 tubg1,LOC107721485 coding downstream 158165 14404974 ~ 14415597 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding downstream 217774 14328206 ~ 14355988 (-)
ramp2 LOC107654510,LOC107721488,LOC107601292,LOC107590449 coding downstream 264321 14303150 ~ 14309441 (-)
gpatch8 LOC107721478,LOC107654521,LOC107674594,LOC107601302,LOC107720016 coding upstream 28498 14610261 ~ 14641128 (-)
baxa baxa,LOC107601305,LOC107721480,LOC107674732,LOC107720019 coding upstream 75967 14657730 ~ 14664833 (-)
mpp3a mpp3a,mpp3,LOC107654527,LOC107737916,LOC107720025,LOC107674727,LOC107591370 coding upstream 386162 14967925 ~ 14987140 (-)
si:ch211-198m17.1 LOC107581740,LOC107654530,LOC107737902,LOC107674687,LOC107720027 coding upstream 410280 14992043 ~ 15009115 (-)
znf281a znf281a,LOC107581742,LOC107654531,LOC107674693,LOC107591442,LOC107720029 coding upstream 433182 15014945 ~ 15026960 (-)
G20212 NA non-coding downstream 114208 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding downstream 122734 14449475 ~ 14451028 (-)
G20202 NA non-coding downstream 185364 14385361 ~ 14388398 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding downstream 351965 14220085 ~ 14221797 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding downstream 513270 14059581 ~ 14060492 (-)
G20231 NA non-coding upstream 21431 14603194 ~ 14604214 (-)
G20230 LOC107674595,LOC107720017,LOC107721479,LOC107601304,LOC107654524,LOC107590367 non-coding upstream 23266 14605029 ~ 14657481 (-)
G20233 asic2,LOC107720021,LOC107654528,LOC107601227,LOC107674665,LOC107720082,LOC107590422 non-coding upstream 50451 14632214 ~ 14687436 (-)
G20225 NA non-coding upstream 84151 14665914 ~ 14671569 (-)
G20245 asic2,LOC107674665,LOC107737939,LOC107590420,LOC107654528,LOC102794937 non-coding upstream 267954 14849717 ~ 14851862 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 134221 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 369412 14202930 ~ 14204350 (-)
G19933 NA other downstream 767784 13805368 ~ 13805978 (-)
gng13b NA other downstream 781160 13786009 ~ 13792602 (-)
G19700 NA other downstream 1526268 13047041 ~ 13047494 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 539043 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 560054 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1017007 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 1869377 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 1871311 16453074 ~ 16455479 (-)

Expression


Co-expression Network