LOC122341548 (cacnb1,LOC107670911,LOC107689043,LOC108413880)


Basic Information

Item Value
gene id LOC122341548
gene name cacnb1,LOC107670911,LOC107689043,LOC108413880
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20010133 ~ 20021740 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234998.1
CAAAAAACCCCACATTACCTGAGCTGTTGTGACGTAAACCACTGCAATGTACTTATCTGAGAAATATCAGACATGCACAAAGTTCACAGAAATCGACGGCAGGCTGCTCCAGTGCAGCGGTTAAGTTCTTGCTATTTTTTGACTCGTCTAAATTTGTTTTGCTTAAATATTAATCTCCATGCATGAGCTGTACAAGAGAGACTAATGtgctcgagagagagagagagagagagagagagagagagagagcagcacaCAGTAGCGCGAGACACATCATCACAAAAGGCGCATGCACAAGAAGCAGACCCGTTGCATTCGTACACCTGTATTTCAATCTCGATTTACAATAACCCGCGCGAAGGGAATATATCTTAGGATCTCCGCGTGTGCAGCTCAGACAGAAGCCTGACTGCTCAATCGTGATACCCTCTTCTTCCTCGGGAGGCATATGTATTCGGCATCGCCGTTTCTTCCAGTAAGCACCAATGCACGCGCGCACCCGCCTCCCTGCGCTCTCAAATAGATGGTGCAAGTAAAGATGTCCAAATCTTCCGCAGACCCTCTGTCTGGTGTAGAAAGCGCTTCCCAGTCGCACTATTTCCAGCTTCCACGAAAACTCCCGAAGCGCAAGGGTCGCTTTAAACGCTCCGATGGCAGCACCTCGTCTGACACCACCTCCAGCTTCATCAAGAGACAGGGCTCAGCAGACTCCTACACCAGTCGTCCTTCAGACTCTGACGTGTCTCTGGAGGAGGACCCTGAGGCTCTCAGGAAAGAAGCCGATAGACAAGCTCTTGCCACCCTAGAGAAGGCTAAGACCAAGCCTGTAGCGTTTGCGGTGAGGACTAACGTTGGCTATAACCCAGGCCCTAATGACGATGTGCCGGTTCAGGGCATGGCTATCTCTTTCGAACCCAAAGACTTCCTGCACATCAAAGAGAAGTATAATAATGACTGGTGGATTGGGCGTTTGGTGAAGGAAGGGTGTGAGGTGGGGTTTATCCCCAGTCCGGTGAAGCTTGAGAGCACCCGTCAATTACAAGAACAGAGAATGAGACAGAACCGCCTTAGCTCCAGTAAGTCCGGAGGAAGCTCTAGTCTGGATGTTGCCACTGGTGCCCGGAGGCCCACTCCACCTGGAACAGCTGACTTGTCCTCTGGGCTTTATGACGATTCGGATTCTGAAGTTGAGGAGGTGGAGCCTTCCAACACCCGCGACCAAAAGGGTGTGGGCGGAAGTGTCACCTCCCCTCAAGGCAACCTGCCCCGCCTCCCTTTCTTTAAGAAGATGGAGCATGTTCCTCCTTATGATGTGGTGCCTTCCATGAGACCCATTATTTTGGTGGGACCATCCCTTAAAGGCTACGAGGTGACAGATATGATGCAGAAAGCTCTCTTTGATTTTCTAAAACACAAATTCGAAGGCAGAATATCCATCACCAGGGTGACAGCAGACATCTCACTTGCCAAACGTTCCGTGCTAAACAACCCCAGCAAACACACGATCATCGAGCGCTCCAGCACCAGATCCAGTCTGGACGTACTGGCGGAGGTTCAGAGTGAGATCGAGAGGATCTTTGAGCTGGCTCGCACGCTGCAGCTGGTGGTTCTGGACGCAGACACGATAAACCACCCGTCCCAACTGGGAAAAACCTCTCTTGCACCTATTATTGTCTACATCAAGATCACCTCTCCGAAGGTTTTGCAGCGGTTAATAAAGTCTAGAGGAAAGTCTCAGGCAAAACATCTCAATGTGCAGATGGTGGCAGCAGACAAACTGGCCCAGTGCCCTTCAGAGCTTTTCGACATCATTCTTGACGAGAACCAGCTAGAAGACGCCTGCGAGCACATGGCTGATTATCTGGAGGCCTACTGGAAATCCACTCATCCTCCCAGCGTCCCTCAGATAAACCCTCTGCTGGAGAAACTCACCTCGGTCGCAGCGGCGGCAGTCGCCCGCAAAGACGCGCTGGCCAACACGCAACCAAAGGTGCCTGCGAGACTTCAGGCCGCACTCACATTAGCGAACGGAGGAACCGATGCTAACTGTAATCGATTATCGCTCACATGCAGAAAGCGCAGGTTGCAATACTACAGGACTTAGTGCAGtagtgcatttcaaataaaaatataatagtcATAAAAAGCCATTTAGATGTACTTTAAGACACTTTCATGACTTTACTACTTTAGTGGGTtgaaaaagcactttaaaagttCAGCTAACTGCATTTgatatgcatttaaacaaatgcattttggtttaATTGCAAGCATGCAATTAAATGTCCAATAACacttagatatatttttatgcatgctaaagtatattatttcaatattaaattgCTAAAGTGTAAACTTTCCAAAAAGACATGTCTCTAAAGTCCCAGGCAAactacacttaaaataaaaacaataaaaaaacactaaagacTTACAAGATTGCATGttataatatt

Function

symbol description
cacnb1 Enables voltage-gated calcium channel activity. Acts upstream of or within muscle contraction and voltage-gated calcium channel complex assembly. Part of voltage-gated calcium channel complex. Is expressed in several structures, including basal plate midbrain region; hatching gland; musculature system; nervous system; and polster. Orthologous to human CACNB1 (calcium voltage-gated channel auxiliary subunit beta 1).

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit beta-1-like isoform X1

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0070978 voltage-gated calcium channel complex assembly biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04863 CACNB2; voltage-dependent calcium channel beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234998.1 True 2462 mRNA 0.48 14 20010133 20021740

Neighbor

gene id symbol gene type direction distance location
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding upstream 10545 19998493 ~ 19999588 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding upstream 11661 19987506 ~ 19998472 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding upstream 68553 19930733 ~ 19941580 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding upstream 88862 19917670 ~ 19921271 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding upstream 498626 19509088 ~ 19511507 (+)
LOC122341339 LOC107754194,LOC107568235 coding downstream 50204 20071944 ~ 20077001 (+)
LOC122341340 NA coding downstream 55262 20077002 ~ 20082045 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding downstream 126774 20148514 ~ 20160181 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding downstream 179536 20201276 ~ 20229670 (+)
bckdhbl LOC107731123,LOC107689045 coding downstream 226336 20248076 ~ 20251489 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 39714 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 58202 19928729 ~ 19951931 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 99450 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 133812 19873439 ~ 19876321 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding upstream 177686 19824721 ~ 19832447 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 138696 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 146896 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 151954 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 208275 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 318151 20339891 ~ 20345356 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 606957 19399408 ~ 19403176 (+)
G21213 NA other upstream 717792 19291445 ~ 19292341 (+)
G21202 NA other upstream 1016899 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1134006 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 1168373 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 42530 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 73111 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 163795 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 860458 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1273962 21295702 ~ 21414286 (+)

Expression


Co-expression Network