gps1 (gps1,LOC107654488,LOC107721507,LOC107688111)


Basic Information

Item Value
gene id gps1
gene name gps1,LOC107654488,LOC107721507,LOC107688111
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14036320 ~ 14043502 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235000.1
CCGAGGCAGCGTCTCGCGGAGTGTGAAGGTAGTGACGTCTCCGCGCTGCAAGACGTCGACCACGCGCACTCTCATGCCccggatgtgtttgtgtgctctgtttctgcagaggaggaggagatgcCACTACCCGTGCAGGTCTTTAACTTTCAGGGGTCTGTAGAACCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACGTTGGATCTAGAGCAGTATGCCTCCAGTTACAGTGGGCTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCCCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTACGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGGATGTGCAAGGAGTCCCAGATGCGGTACCGGAGGGGGCAGTCGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCCACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGACACCGACCTTAAGAACTACAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCATGATGACCTCGGAGATCACTATCTTGACTGTGGTGACCTCAGCAATGCCCTGAAATGCTACTCCCGAGCCAGAGACTACTGCACTAGCGCCAAGCATGTCATCAACATGTGTCTTAATGTAATCAAGGTTAGCGTTTACCTCCAAAACTGGTCCCATGTACTTAGCTATGTCAGCAAGGCTGAATCCACTCCAGAGATAGCAGAGCAAcgaggagagagagatagtCAAAACCAAGCTGTTCTAACCAAACTGAAATGTGCTGCAGGATTGGCAGAACTTGCCTCAAGAAAGTATAAACCGGCTGCCAAGTGCTTCCTGCAGGCCTCCTTCGACCACTGCGACTTCCCTGAGCTACTTTCCCCCAGTAATGTAGCAGTGTATGGGGGGCTGTGTGCCCTGGCTACATTTGACAGACAGGAACTGCAGCGAAATGTCATCTCAAGCAGctcctttaaattatttttagagtTGGAACCACAAGTCCGTGATATTATCTTCAAGTTTTACGAGTCAAAGTATGCATCTTGTCTGAAAATGCTGGATGAAATGAAGgATAATCTCCTACTAGACATGTATCTGGCCCCTCATGTAAGAACACTGTACACACAAATCAGGAACAGAGCCCTCATACAGTACTTTAGCCCCTATGTGTCAGCAGACATGAACAAAATGGCCGTGGCCTTTAATACCACAGTGGCAGCTCTGGAGGATGAACTGACCCAGCTGATCCTGGAGGGCCTGATCAATGCTCGAATCGACTCCCACAGCAAGATTCTGTATGCCAGAGACGTGGATCAGAGAAGCACAACCTTTGAGAAGTCTCTACAGATGGGCAAAGAGTTCCAGAGACGAGCAAAAGCCATGATCCTGCGGGCAGCTGTGCTTCGTAATCAGATACACGTCAAGGTAACAGGGTCCCCAGGTCCCCTCCAAGAGAAGGCAGTCAAGGGGAGCTCACACCTGCCAACAGCCAAACACGAATGAGCACCAACATGTGAAGACTCGACCAGATGCCTCTCCTAGGAAAGTACACGGGGCCACTGCCGCATCTTAGGCCCCCCgtttagaaaacaattatttccctgctgaagagagaaaaatcacaatCTAAAGACTTTATTTAAGTTGGGAAGAAGATATCTGTTGTCTGTATTAAAGACAAGCACACCCTGTTGCtcaaatgaaaaggaaaaaaaagataaaaagagaaaCGCGGCACTTAAGCTGTACTGGCCTGTTGTTCTTTGTAAAGGATGCACTTTCCTCTGTATCTTGTGACAAACCTTGATTACACATTGAGAAACCTCAtcacaaaacatgcttttaaaataaacatacattcaAAAAGA
>XM_043235001.1
CCGAGGCAGCGTCTCGCGGAGTGTGAAGGTAGTGACGTCTCCGCGCTGCAAGACGTCGACCACGCGCACTCTCATGCCccggatgtgtttgtgtgctctgtttctgcagaggaggaggagatgcCACTACCCGTGCAGGTCTTTAACTTTCAGGGGTCTGTAGAACCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACGTTGGATCTAGAGCAGTATGCCTCCAGTTACAGTGGGCTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCCCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTACGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGGATGTGCAAGGAGTCCCAGATGCGGTACCGGAGGGGGCAGTCGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCCACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGACACCGACCTTAAGAACTACAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCATGATGACCTCGGAGATCACTATCTTGACTGTGGTGACCTCAGCAATGCCCTGAAATGCTACTCCCGAGCCAGAGACTACTGCACTAGCGCCAAGCATGTCATCAACATGTGTCTTAATGTAATCAAGGTTAGCGTTTACCTCCAAAACTGGTCCCATGTACTTAGCTATGTCAGCAAGGCTGAATCCACTCCAGAGATAGCAGAGCAAcgaggagagagagatagtCAAAACCAAGCTGTTCTAACCAAACTGAAATGTGCTGCAGGATTGGCAGAACTTGCCTCAAGAAAGTATAAACCGGCTGCCAAGTGCTTCCTGCAGGCCTCCTTCGACCACTGCGACTTCCCTGAGCTACTTTCCCCCAGTAATGTAGCAGTGTATGGGGGGCTGTGTGCCCTGGCTACATTTGACAGACAGGAACTGCAGCGAAATGTCATCTCAAGCAGctcctttaaattatttttagagtTGGAACCACAAGTCCGTGATATTATCTTCAAGTTTTACGAGTCAAAGTATGCATCTTGTCTGAAAATGCTGGATGAAATGAAGgATAATCTCCTACTAGACATGTATCTGGCCCCTCATGTAAGAACACTGTACACACAAATCAGGAACAGAGCCCTCATACAGTACTTTAGCCCCTATGTGTCAGCAGACATGAACAAAATGGCCGTGGCCTTTAATACCACAGTGGCAGCTCTGGAGGATGAACTGACCCAGCTGATCCTGGAGGGCCTGATCAATGCTCGAATCGACTCCCACAGCAAGATTCTGTATGCCAGAGACGTGGATCAGAGAAGCACAACCTTTGAGAAGTCTCTACAGATGGGCAAAGAGTTCCAGAGACGAGCAAAAGCCATGATCCTGCGGGCAGCTGTGCTTCGTAATCAGATACACGTCAAGTCCCCTCCAAGAGAAGGCAGTCAAGGGGAGCTCACACCTGCCAACAGCCAAACACGAATGAGCACCAACATGTGAAGACTCGACCAGATGCCTCTCCTAGGAAAGTACACGGGGCCACTGCCGCATCTTAGGCCCCCCgtttagaaaacaattatttccctgctgaagagagaaaaatcacaatCTAAAGACTTTATTTAAGTTGGGAAGAAGATATCTGTTGTCTGTATTAAAGACAAGCACACCCTGTTGCtcaaatgaaaaggaaaaaaaagataaaaagagaaaCGCGGCACTTAAGCTGTACTGGCCTGTTGTTCTTTGTAAAGGATGCACTTTCCTCTGTATCTTGTGACAAACCTTGATTACACATTGAGAAACCTCAtcacaaaacatgcttttaaaataaacatacattcaAAAAGA

Function

symbol description
gps1 Predicted to act upstream of or within protein deneddylation. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to human GPS1 (G protein pathway suppressor 1).

NR:

description
PREDICTED: COP9 signalosome complex subunit 1

GO: NA

KEGG:

id description
K12175 GPS1, COPS1, CSN1; COP9 signalosome complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235000.1 True 1952 mRNA 0.48 14 14036320 14043502
XM_043235001.1 False 1935 mRNA 0.48 14 14036320 14043502

Neighbor

gene id symbol gene type direction distance location
csnk1da csnk1d,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC103024472,LOC108259482,LOC104935249 coding downstream 10250 14003339 ~ 14026070 (-)
engase engase,LOC107654484,LOC107601267,LOC107719983,LOC107590436 coding downstream 41945 13987076 ~ 13994375 (-)
coil LOC107601265,LOC107654481,LOC107721510,LOC107688104,LOC107719984,LOC107590393,LOC107716599 coding downstream 54109 13978194 ~ 13982211 (-)
rab11fip4a rab11fip4a,rab11fip4,LOC107601264,LOC107654480,LOC107719982,LOC107688103,LOC105899936,LOC108436969,LOC107721471 coding downstream 59436 13938088 ~ 13976884 (-)
suz12a LOC107721513,LOC107601261,LOC107688101,LOC107654477,LOC107719980,LOC107590398 coding downstream 123867 13902654 ~ 13912453 (-)
rac3a rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding upstream 806 14044308 ~ 14048699 (-)
prkar1aa prkar1aa,prkar1a,LOC107654492,LOC107721504,LOC107590390,LOC106606198,LOC108274040 coding upstream 5980 14049482 ~ 14056722 (-)
gna13b LOC107654495,LOC107721501,LOC107601276,LOC107688114,LOC107719992,LOC107590387,LOC108438014 coding upstream 41986 14085488 ~ 14101958 (-)
cog1 cog1,LOC107654497,LOC107601277,LOC107721521,LOC107590385,LOC107688115,LOC107719994 coding upstream 68045 14111547 ~ 14119590 (-)
rogdi rogdi,LOC107719995,LOC107688116,LOC107654499,LOC107721519,LOC107601278 coding upstream 78637 14122139 ~ 14126578 (-)
LOC122342150 NA non-coding downstream 106043 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 137388 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 402535 13633559 ~ 13633785 (-)
G19811 NA non-coding downstream 678531 13357579 ~ 13357789 (-)
G19726 NA non-coding downstream 906712 13125521 ~ 13129608 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding upstream 16079 14059581 ~ 14060492 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 176583 14220085 ~ 14221797 (-)
G20202 NA non-coding upstream 341859 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 390203 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 405973 14449475 ~ 14451028 (-)
G19933 NA other downstream 230342 13805368 ~ 13805978 (-)
gng13b NA other downstream 243718 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 968130 13005996 ~ 13068190 (-)
G19700 NA other downstream 988826 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 1273230 12681990 ~ 12763090 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 159428 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 391645 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1077304 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 1098315 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1555268 15598770 ~ 15600348 (-)

Expression


Co-expression Network