dus1l (dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391)


Basic Information

Item Value
gene id dus1l
gene name dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14029505 ~ 14036025 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235002.1
CACCGCGACACCAGCAGCACTTCATGTGCCGCATAGAGCTGCTGTCTCTGTGGCTGGATCATAAGCTACTGTTACCCAGATTGCATGTAACCAGTTACTGCCCAGCTCTGGATCTCATCCTGTGCAGGCAGCATGGCGAAACCCAGCGGGTTCGAGTTTTGGACGAGCACTCTGAAGGGGGCACGCTATGTGGTGGCACCCATGGTGGAGCAGAGCGAGCTGGCCTGGAGGCTGCTGAGCCGCAGACACGGAGCAGAGCTCTGCTACACTCCCATGCTGCACGCTCAGGTGTTCGTGAGGGATGTCAACTACCGCCGAGAGAACCTGTACAACGAGGTCAACCAGGAGGATCGGCCCCTCATCACACAGTTCTGTGCCAATGATCCTGAAGTGTTTATCCAGGCTGCTCTGCTCGCACAGGATTACTGTGATGCCATCGATCTGAATTTGGGTTGCCCCCAGATGATTGCAAAAAGAGGCCATTATGGGGTGTTTCTTCAAGATGAGTGGGACCTTCTTGAGAAAATGATTAAACTGGCAGATGAAAAACTCTCCGTGCCCATTACCTGCAAAATCCGGGTCTTCCCAGAGATTGAGAAAACCGTGAAGTATGCAAAAATGCTGGAAAAGGCTGGCTGCCAGctcctCACAGTTCACGGGAGAACTAAAGATCAAAAGGGGGCTCTGACGGGCATTGCAAGTTGGAAGCACATCAAAGCTGTACGGGAGGCTGTAAAGATTCCCGTCTTCGCCAATGGAAACATCCAGCACCTGAGTGATGTTCAGCTCTGCATGGAGGAGACTGGAGTCCAAGGTGTCATGAGTGCAGAAGGGAATCTCCACAATCCTGCCCTGTTTGAAGGCCGTAGTCCACCTGTGTGGGAGATGGCTGAGGAGTACCTGGAGGTTGTGGAGAAACACCCACCCTGCAGTCTGTCTTTCGTCAGAGCTCACATCTTCAAACTCTGGCACCACACTTTACAGATACATCAAGACCTGAGGGAGGAGCTGGCCAAAGCCAAAAACATAGCTGGGATTGCAGAGGTCAACAGACAGCTGAAAAAACGTTGCCAGGAGGAGATGGCTAAAGATGAATCGGAATGGATTCGGACTGGACTTCCCTTCCCTCACTGGATCTGTCAACCCTACGTCAGACCACCGCCCAAGGATCCAAACTCTGAAAATGGGCAGAAAGCATCAGAAACCAAAGCCGTGAGTGTAAAGAGGGCGCTGGAGGAAAGCGATGGCCCCAACGACTCGCTCTCCAAGAACAAGCAGAAGAAGAAAGCCCGCAATCCCCACAAGAACTTCTGTCCAGAGCTGAAACCAAAATACGTCAAGTGTGAGCAATGCGGAAACCCAAAGGGGAATAAATGTGTGTTCAGCTTGTGCCGTGGCTGCTGTAAGAGGAAGGCTTTCAAGGAAGTGGCCGATTGTCCCGGCCATGGACTGAGATTTAAAACCAAGGCTTTAAAACTGTCTAACTCCGATACGGGTGGTGGGCTGACGAATGGGAATCTCAACAGTCAGACCGTTTCCAGCGCAGCCCACAATCCGCTGTAAAGCACAACAGTGACTTCTGAAATCACATTCAACTGGTTTACCGCTTAACATTTCTGCACTGACTTCAATGTACAAGACTGCATTGGTGGACAAACCCGGTTTTTCCACTGTTGATGTGTGATTTGGATCCATATGTCACCAAAACAACTGAACGTGCAAAGAAACGGGGCATGGAAAGATCAGCGCTACTGTTACTTACGCTAGATCTTTTGTAGAGTCCTTCTTTTCTGTAATGAAGTACCACTTTCTAGACTGCTGTCGGGTGAATAGTTCCATAGTCTTAATATTTCGAGATTTGTTTATTAGAGTAGTATATTTTGATAATTACTGGGAACGTAGTATATGAAGCAGCCGCTCTGAATGCACAATCCTGCACTACACCCAAGATTGAGGAGCTGGACTTTTATCTCGGGACGTTCTGTGGAAATACACCAACACGCTGGTGGTCATCGTCActcaaacattattttaactgtatttttactatatttattgtCTTCCGAAATGAAAGATTGGCCATATTTGTAGGTTGCAACTTGCAACCAAACATCTTTGGACttttaatccatttttaattttttaacatgtaTGTAAATTCACTTTTATTCCGAGACCTCTGCTTATTTTATTGTGCGCTTACGATAACGCGactatttcacacacacacatatattgttaTACAGATTTATTGTAGAAATTTTTAGTTACACTACAAAGATTCCTGACCCAGGAAATTATTTCAGGTACAGATGCCTTAGCCTATAATCGCTAATATTGTACTGCCTTTTACCTCCATTCTtttggtgtttaaaaaaaaaaaaaggatacagTCCTAATACAACTTCTGTTCAACATATTGACATTTTCTTGTTGTTATCGGCcagcatgatttattttttcacacattaCTTTAAAGCAGAGGTCACCACGTTCGTttctggagggccggtgtcctgcagagctTAGCTCTGaccttaatcaaacacatctgaagCAGCTAATCGAGCTCTTACTAGGTATACTTAACTTCCAGGCAGGCGCgttgaggcaagttggagctaaactacAGGACACCGGCCCTTCGGGATCAAGTTTTGTGACCCCTGCTTTAAAGCATCAGGACTCAACTCCGTGCCTTATTCTAAAGATTTGGGACAGTTACTCAGAAAACACCCTTGAACGAATGTAAACGTGTAGATCTGTggatgtttagtttttttttttcctcatcaggGCTTATTGTTCAAACATTTTGGAAACTTTGCTCAAATAAATTCTGACGTGTTAAAA
>XM_043235003.1
AATAAATCAAAAGGTTTATCGTTTCCTCACGGATGTATTTCACCGCGACACCAGCAGCACTTCATGTGCCGCATAGAGCTGCTGTCTCTGTGGCTGGATCATAAGCTACTGCAGCATGGCGAAACCCAGCGGGTTCGAGTTTTGGACGAGCACTCTGAAGGGGGCACGCTATGTGGTGGCACCCATGGTGGAGCAGAGCGAGCTGGCCTGGAGGCTGCTGAGCCGCAGACACGGAGCAGAGCTCTGCTACACTCCCATGCTGCACGCTCAGGTGTTCGTGAGGGATGTCAACTACCGCCGAGAGAACCTGTACAACGAGGTCAACCAGGAGGATCGGCCCCTCATCACACAGTTCTGTGCCAATGATCCTGAAGTGTTTATCCAGGCTGCTCTGCTCGCACAGGATTACTGTGATGCCATCGATCTGAATTTGGGTTGCCCCCAGATGATTGCAAAAAGAGGCCATTATGGGGTGTTTCTTCAAGATGAGTGGGACCTTCTTGAGAAAATGATTAAACTGGCAGATGAAAAACTCTCCGTGCCCATTACCTGCAAAATCCGGGTCTTCCCAGAGATTGAGAAAACCGTGAAGTATGCAAAAATGCTGGAAAAGGCTGGCTGCCAGctcctCACAGTTCACGGGAGAACTAAAGATCAAAAGGGGGCTCTGACGGGCATTGCAAGTTGGAAGCACATCAAAGCTGTACGGGAGGCTGTAAAGATTCCCGTCTTCGCCAATGGAAACATCCAGCACCTGAGTGATGTTCAGCTCTGCATGGAGGAGACTGGAGTCCAAGGTGTCATGAGTGCAGAAGGGAATCTCCACAATCCTGCCCTGTTTGAAGGCCGTAGTCCACCTGTGTGGGAGATGGCTGAGGAGTACCTGGAGGTTGTGGAGAAACACCCACCCTGCAGTCTGTCTTTCGTCAGAGCTCACATCTTCAAACTCTGGCACCACACTTTACAGATACATCAAGACCTGAGGGAGGAGCTGGCCAAAGCCAAAAACATAGCTGGGATTGCAGAGGTCAACAGACAGCTGAAAAAACGTTGCCAGGAGGAGATGGCTAAAGATGAATCGGAATGGATTCGGACTGGACTTCCCTTCCCTCACTGGATCTGTCAACCCTACGTCAGACCACCGCCCAAGGATCCAAACTCTGAAAATGGGCAGAAAGCATCAGAAACCAAAGCCGTGAGTGTAAAGAGGGCGCTGGAGGAAAGCGATGGCCCCAACGACTCGCTCTCCAAGAACAAGCAGAAGAAGAAAGCCCGCAATCCCCACAAGAACTTCTGTCCAGAGCTGAAACCAAAATACGTCAAGTGTGAGCAATGCGGAAACCCAAAGGGGAATAAATGTGTGTTCAGCTTGTGCCGTGGCTGCTGTAAGAGGAAGGCTTTCAAGGAAGTGGCCGATTGTCCCGGCCATGGACTGAGATTTAAAACCAAGGCTTTAAAACTGTCTAACTCCGATACGGGTGGTGGGCTGACGAATGGGAATCTCAACAGTCAGACCGTTTCCAGCGCAGCCCACAATCCGCTGTAAAGCACAACAGTGACTTCTGAAATCACATTCAACTGGTTTACCGCTTAACATTTCTGCACTGACTTCAATGTACAAGACTGCATTGGTGGACAAACCCGGTTTTTCCACTGTTGATGTGTGATTTGGATCCATATGTCACCAAAACAACTGAACGTGCAAAGAAACGGGGCATGGAAAGATCAGCGCTACTGTTACTTACGCTAGATCTTTTGTAGAGTCCTTCTTTTCTGTAATGAAGTACCACTTTCTAGACTGCTGTCGGGTGAATAGTTCCATAGTCTTAATATTTCGAGATTTGTTTATTAGAGTAGTATATTTTGATAATTACTGGGAACGTAGTATATGAAGCAGCCGCTCTGAATGCACAATCCTGCACTACACCCAAGATTGAGGAGCTGGACTTTTATCTCGGGACGTTCTGTGGAAATACACCAACACGCTGGTGGTCATCGTCActcaaacattattttaactgtatttttactatatttattgtCTTCCGAAATGAAAGATTGGCCATATTTGTAGGTTGCAACTTGCAACCAAACATCTTTGGACttttaatccatttttaattttttaacatgtaTGTAAATTCACTTTTATTCCGAGACCTCTGCTTATTTTATTGTGCGCTTACGATAACGCGactatttcacacacacacatatattgttaTACAGATTTATTGTAGAAATTTTTAGTTACACTACAAAGATTCCTGACCCAGGAAATTATTTCAGGTACAGATGCCTTAGCCTATAATCGCTAATATTGTACTGCCTTTTACCTCCATTCTtttggtgtttaaaaaaaaaaaaaggatacagTCCTAATACAACTTCTGTTCAACATATTGACATTTTCTTGTTGTTATCGGCcagcatgatttattttttcacacattaCTTTAAAGCAGAGGTCACCACGTTCGTttctggagggccggtgtcctgcagagctTAGCTCTGaccttaatcaaacacatctgaagCAGCTAATCGAGCTCTTACTAGGTATACTTAACTTCCAGGCAGGCGCgttgaggcaagttggagctaaactacAGGACACCGGCCCTTCGGGATCAAGTTTTGTGACCCCTGCTTTAAAGCATCAGGACTCAACTCCGTGCCTTATTCTAAAGATTTGGGACAGTTACTCAGAAAACACCCTTGAACGAATGTAAACGTGTAGATCTGTggatgtttagtttttttttttcctcatcaggGCTTATTGTTCAAACATTTTGGAAACTTTGCTCAAATAAATTCTGACGTGTTAAAA

Function

symbol description
dus1l Predicted to enable tRNA dihydrouridine synthase activity. Predicted to act upstream of or within tRNA processing. Orthologous to human DUS1L (dihydrouridine synthase 1 like).

NR:

description
PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05542 DUS1; tRNA-dihydrouridine synthase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235002.1 True 2853 mRNA 0.46 14 14029545 14036025
XM_043235003.1 False 2836 mRNA 0.46 14 14029505 14036025

Neighbor

gene id symbol gene type direction distance location
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding upstream 42733 13982254 ~ 13986772 (+)
trnat-cgu NA coding upstream 115811 13913623 ~ 13913694 (+)
crlf3 crlf3,LOC107688102,LOC107654479,LOC107721514,LOC107719981 coding upstream 126916 13888940 ~ 13902589 (+)
traf7 traf7,LOC107601260,LOC107719978,LOC107590399,LOC107654453,LOC107721517 coding upstream 221323 13796853 ~ 13808182 (+)
rpusd1 rpusd1,LOC107720093,LOC107654465,LOC107590456,LOC107688151 coding upstream 259560 13767191 ~ 13769945 (+)
zgc:86896 zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990 coding downstream 21619 14057644 ~ 14062454 (+)
wipi1 wipi1,LOC107721503,LOC107654490,LOC107688112,LOC107590389,LOC107719990 coding downstream 27248 14063273 ~ 14073404 (+)
slc16a6b slc16a6b,LOC107721502,LOC107719991,LOC107688113,LOC107654485,LOC107590388 coding downstream 40177 14076202 ~ 14084506 (+)
rgs9a rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993 coding downstream 65990 14102015 ~ 14111321 (+)
si:dkeyp-72e1.9 si:dkeyp-72e1.9,LOC107721498,LOC107601283,LOC107688120,LOC107654504 coding downstream 121699 14157724 ~ 14195322 (+)
G19963 NA non-coding upstream 86014 13940616 ~ 13943491 (+)
LOC122342149 NA non-coding upstream 109236 13913926 ~ 13920269 (+)
G19891 NA non-coding upstream 211283 13815353 ~ 13818222 (+)
G19890 NA non-coding upstream 236950 13787833 ~ 13792555 (+)
G19798 NA non-coding upstream 587356 13441686 ~ 13442149 (+)
G20009 NA non-coding downstream 64148 14100173 ~ 14101904 (+)
G20057 NA non-coding downstream 112439 14148464 ~ 14150958 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding downstream 267125 14303150 ~ 14304893 (+)
G20146 NA non-coding downstream 343599 14379624 ~ 14457906 (+)
G20166 NA non-coding downstream 581237 14617262 ~ 14618834 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other upstream 27127 13995961 ~ 14002378 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 318640 13698537 ~ 13710865 (+)
si:dkey-204f11.64 LOC105898698 other upstream 914649 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 1041592 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 1500702 12519837 ~ 12528803 (+)
G19973 NA other downstream 13465 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 82442 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 84160 14120185 ~ 14123128 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 219465 14255490 ~ 14273309 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other downstream 499154 14535179 ~ 14615408 (+)

Expression


Co-expression Network