gga3b (gga3,LOC107751623,LOC107677341,LOC107751620,LOC107696338,LOC107573175)


Basic Information

Item Value
gene id gga3b
gene name gga3,LOC107751623,LOC107677341,LOC107751620,LOC107696338,LOC107573175
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2617272 ~ 2627120 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235025.1
GAGGCGTCTAAATCAAGGACCTCCGTACAGGCAGCTGATGATACTGCCGGCTAAGacactattcatttaaaaaaataaataaagctgcagTTTGTCGCTGCACACGGGCTCGTGTGAAACAGATGATGCTTGCTTTTATTACAGTCGGTTTAATTTGACGAATGTCTCCGGCGTTTAAGGAGGAAATGTGTGGATTTATGGACTCAAAGCTTTAAATGAAGATCATGGCGTTTCCGGAGGGAGAATCACTCGAATCCTGGCTCAACAAAGCCACACACCCGACCAACAGGCAGGAGGACTGGGAATACATAATCGGGTTTTGTGACCAGATCAATAAGGAGTTGGAAGGTCCTCAGATAGCCGTGAGACTCCTGGTTCACAAAATCCACTCTCAAGAATGGGAAGCCCTTCAAGCTCTGACGGTACTGGAGGCGTGTATGAAGAACTGTGGGCGAAGATTTCACAACGAAATAGCCAGATATAGGTTTTTAAATGAGCTGATCAAAGTGGTCTCACCCAAGTATATGGGGGACAGCGTTTCTGACAAGGTGAAGAATAAGATCATTGAGATGTTGTACAGCTGGACCGTGGCGTTTCCCAACGAGGCCAAGATAGCAGACGCGTACCAGACGCTCAAGAGACAGGGACTTGTGATGTCAGACCCAGAACTGACGGTGGACAAAACCCTGATCCCGTCTCCTCCGGCACGCCCCAAAAACCCGGTGTTTGACAACGAGGACATGGGGAAGTTGTTGGCTGAACTTCTGAGGAGCAAAAACCCAGAAGATCTTCAGGAGGCTAACAGACTGATCAAAAACATGGTGAAGGAGGACGAGGCCCGAGTGCAGAAAATGACCAAACGCAGCCATACGCTGGAGGAAGTCAACAACAACGTCAAGCTCCTGAGCGAAATGCTGAGTCACTACGACAGAGACCGATCGTCGGACGCCGACCGCGAGCTCATCAAGGAGCTGTATGAACGCTGTGATAAACTACGGCGCACGGCGTTCAAACTGGCCACCGAAGCCGAGGACAACGACTCCAGTTTGGGGGACATTCTCAAGGCGAACGATGATTTGTCCAGAGTTATCAGCGCCTATAAACGAATCGTAGAAGGACAGGCGGACGACGGCGAGGGGGAAGATCTCAGACTAGCTGCCAGCGAAGGATGTGAGATCACGGGCACGCTGATTGATCTGGCTGGACTGGATGAACCTTGCTCTCCTCCGACCGtcgctcctcctcctcctcttcctcctcaggtCCCGTCAGCCAATCCCACGGCCTCGCCCATCCCCGTGCTCCCGCCTCCTCCTCGCCGATTGGCCGGGGGTCACGGCAGTCAGACGAGCAGCCCCAATCACAAACCTCCTGAGCAGCAGACCTCCCTCTCCCTGCTGGACGATGAACTCTTGTCTCTCGGACTGAATGATCCTCCCTCTGTGCCAAACAGACCGAAGTTGGACGAATTATCTGGACAGTGGACGTCTTTACAGGCTCCTGATCCCGGCCTGGACCTGTTTGGGAGCATCTCGGCTCCGAGCGCCGTCTTTCCCACAACACACACGCCTGCTCAGACCTCACACACAGTGGCCGTCAGTCAGGGGCTGCAGGATCTCTCCATGCTGGACTTTGGAGGTGGAAAGAGtGTTTCTGGTCTGAGTGGCATCGCTGGAGGGACGTTCGGTCTTTCCGGAGGCGTGACGGGCTCCGCGGCCGGCCCTCTTCAGTCCACTAACCCGTTCGTGAGCGCGGCGGTGCCTGGTTCGCCCGCTGTGGCCCGGGCTCAGGCGATGACGGCCGGCTCGGCTCCGGGCAGCCCTTTCTTTCAGCCCTTCTCATCTCCGTCTCACTCGCTTCAGTGCAGCCCGGCACGGAGCTCGGAGCCCAGCCTGTCCAACCTGTGCGTCCCGCTCGAGTCCATCAGACCCAGTAAAGTGTTACCTGTGACGGTGTACGATAAGGACGGAGTCCGTGTTCTCATGCACTTTGCGATGGACTGTCCACCGGGTCGACCGGACGTCCTGGTCATGGTGGTGTCGTTGCTCAACACGGCGCCGTTACCGGTGCGAAACATAGTGCTGCAAGCAGCCGTGCCCAAGTCTATGCGTGTGAAGCTTCAGCCTCCATCAGGAACCGAGATCGCGCCCTTTAACCCCATCCTGCCCCCTGCATCCATCACTCAGGTCATGCTGCTCGCCAACCCACTCAAGgagcGCGTGCGCTTGCGCTACAAGCTGACGTATCTCCTGGGCGAGCGTCAGTACTCGGAGGTGGGCGAGCTGGATCAGTTTCCCCCGGCGGACAGATGGGGCTCCCTGTAGATCTCTGCTCCAACTCTTCCACGCTCTTTCCCGAGTGTCGTCACCCGTTTGTGCGGTTCATTTCCTTTCAGTCAGTGTTCTGCTGTAGCCTTGTGAAGCAGCGTTTGATGcttgatgtttgtgttttttttggggggggattCGAGCTGGATTTTAATACGATAACGCAACGTCAGCGATGATGCTCCGTCTGTCACGGCAATCACAGTTTCTGTCAAAATACCGTAGTAAAACGACAATTAATTggcatttgcaaaaaaacagagtacgttttaatttaagaaaaccTGTCATTTATTCGAAATGCGTCAATTACTACAAACTTGCCTGATTTAGGCCACGTTTAAAACCTGTGTGGTATCGTTGCGATACTAtaatagctgtttttaaaataccgttatttttgtattcatttagttattatgtaatgtttttcatacgtgtatagtttttattatttgtatttcacttttttagttttagctactTCAGTACATTACGTTGACGCAAACGATAAAAGTGTGAAGCGTAGCtaagtatgtttttaatttaaaaagtagcgaaatgttaaatatataggGTTTAGTCGACCCTTAAAGCACGATACGATACCACTGTGGTGTTGTatttagttaataaatatatatatatatattgtattgtatgcCATTTTTAGGTGTCATGGTTTTATTTCGAACAAAAAATGAAACCGCAAATCAGTTTCAATAGTGCAAAAATATCTCTTTTCATTGGCTATTTATTGACAAATCGAACAAAATCGACTTTTTCCGAGCACAGTATTAACTGTGGTATTTTGGCGTGAACCGCGGTAAATGGCGTCAAACTCCGAAGCCGAGCTGATACTGACGGTGTCACGTGACCTCGTGGAGCGCATCTAACCGCGATCTCGCTCTTTCCAGGCCGCTCCAGGCGTTCCTCGCGACAAACGAGCGTTTCAGCTTTGCTCTTTCTAGACCTTAGACTATTCCTTTCCCGCGAACTTCAGCTCTTGAAGTCATGACGCATCGGATCGAATGTACCTGCAGTCAGTCGAGTTTACATGGAGACCGCTGTGAGTTTACACGCGTAACGTCAGACTAACGTTACGTTGTctattttgagtttttatctGCCTCTGTTGTCGTTCAACACTGtttctggttttatttattgctgCTACAGGAACGTTTGGACTCAAGTTTCAGCATTACAGGCCGTCTCAGACAgtctttgtttaatattaacaGTGTTTTTGCCTGCAGGTTATGAGATGAAGGTCTCGATGGACAAGTGAGCGTTTTGTTTCATCAGATCAAGGCCTCGTGTGATTTTTGGTCCCAAACAAACCTTAATGTGTCCGACTGGAAGAAGAGGACAGCTGCTCCTCAGTTGTGTTCAAAGCGTTTAATTCATTACGGCCATGTGTTTAGACTCGGACAGCAGCGATCGAGCGAAtctcacacatacattatgaatagttcacccaaaaaggctacatttatgttttgcattttgttggtatctgcactttttttgcatgACGCTTAAACactaattgtaataaatacatatgttaTACACTATATGTTcacagtgatttttaaaaaaaaatatcttatttgtataaattttgGGTCCCGTACTAGtcttaactttaaaaaatgctttttgattttggggtgaattcaTGGTGATTTTGATGAGATTCGTTCGATTGATGATTGGGAATCTTGTTTGAACACGTTGGACTGTGTTTCTGGAGCATCTCTGCCGATTCGGACTTGTTTCAGGAAAATGGAGCTTCATTGTGCAACTGTATCAAGTGTTTCGAGTATTTCTGAGGAAccttgtgtgtgtattattacgAATCATTGTGTCTCTTTTTAAGAGCCAAAGCTTCATCTGATCCGATGTTGGTGACAATGGTTTAGGAGGACAAATGTAGAGCTTCTTAAAGGTTGTTATGGATGACTATGACAATGATGATGCACTGCTCTGGTGTTTAATAACGACTCCATCATGTGTGCTGCGCCATTAAATACTTATTAAATGAA
>XM_043235026.1
GAGGCGTCTAAATCAAGGACCTCCGTACAGGCAGCTGATGATACTGCCGGCTAAGacactattcatttaaaaaaataaataaagctgcagTTTGTCGCTGCACACGGGCTCGTGTGAAACAGATGATGCTTGCTTTTATTACAGTCGGTTTAATTTGACGAATGTCTCCGGCGTTTAAGGAGGAAATGTGTGGATTTATGGACTCAAAGCTTTAAATGAAGATCATGGCGTTTCCGGAGGGAGAATCACTCGAATCCTGGCTCAACAAAGCCACACACCCGACCAACAGGCAGGAGGACTGGGAATACATAATCGGGTTTTGTGACCAGATCAATAAGGAGTTGGAAGGTCCTCAGATAGCCGTGAGACTCCTGGTTCACAAAATCCACTCTCAAGAATGGGAAGCCCTTCAAGCTCTGACGGTACTGGAGGCGTGTATGAAGAACTGTGGGCGAAGATTTCACAACGAAATAGCCAGATATAGGTTTTTAAATGAGCTGATCAAAGTGGTCTCACCCAAGTATATGGGGGACAGCGTTTCTGACAAGGTGAAGAATAAGATCATTGAGATGTTGTACAGCTGGACCGTGGCGTTTCCCAACGAGGCCAAGATAGCAGACGCGTACCAGACGCTCAAGAGACAGGGACTTGTGATGTCAGACCCAGAACTGACGGTGGACAAAACCCTGATCCCGTCTCCTCCGGCACGCCCCAAAAACCCGGTGTTTGACAACGAGGACATGGGGAAGGACGAGGCCCGAGTGCAGAAAATGACCAAACGCAGCCATACGCTGGAGGAAGTCAACAACAACGTCAAGCTCCTGAGCGAAATGCTGAGTCACTACGACAGAGACCGATCGTCGGACGCCGACCGCGAGCTCATCAAGGAGCTGTATGAACGCTGTGATAAACTACGGCGCACGGCGTTCAAACTGGCCACCGAAGCCGAGGACAACGACTCCAGTTTGGGGGACATTCTCAAGGCGAACGATGATTTGTCCAGAGTTATCAGCGCCTATAAACGAATCGTAGAAGGACAGGCGGACGACGGCGAGGGGGAAGATCTCAGACTAGCTGCCAGCGAAGGATGTGAGATCACGGGCACGCTGATTGATCTGGCTGGACTGGATGAACCTTGCTCTCCTCCGACCGtcgctcctcctcctcctcttcctcctcaggtCCCGTCAGCCAATCCCACGGCCTCGCCCATCCCCGTGCTCCCGCCTCCTCCTCGCCGATTGGCCGGGGGTCACGGCAGTCAGACGAGCAGCCCCAATCACAAACCTCCTGAGCAGCAGACCTCCCTCTCCCTGCTGGACGATGAACTCTTGTCTCTCGGACTGAATGATCCTCCCTCTGTGCCAAACAGACCGAAGTTGGACGAATTATCTGGACAGTGGACGTCTTTACAGGCTCCTGATCCCGGCCTGGACCTGTTTGGGAGCATCTCGGCTCCGAGCGCCGTCTTTCCCACAACACACACGCCTGCTCAGACCTCACACACAGTGGCCGTCAGTCAGGGGCTGCAGGATCTCTCCATGCTGGACTTTGGAGGTGGAAAGAGtGTTTCTGGTCTGAGTGGCATCGCTGGAGGGACGTTCGGTCTTTCCGGAGGCGTGACGGGCTCCGCGGCCGGCCCTCTTCAGTCCACTAACCCGTTCGTGAGCGCGGCGGTGCCTGGTTCGCCCGCTGTGGCCCGGGCTCAGGCGATGACGGCCGGCTCGGCTCCGGGCAGCCCTTTCTTTCAGCCCTTCTCATCTCCGTCTCACTCGCTTCAGTGCAGCCCGGCACGGAGCTCGGAGCCCAGCCTGTCCAACCTGTGCGTCCCGCTCGAGTCCATCAGACCCAGTAAAGTGTTACCTGTGACGGTGTACGATAAGGACGGAGTCCGTGTTCTCATGCACTTTGCGATGGACTGTCCACCGGGTCGACCGGACGTCCTGGTCATGGTGGTGTCGTTGCTCAACACGGCGCCGTTACCGGTGCGAAACATAGTGCTGCAAGCAGCCGTGCCCAAGTCTATGCGTGTGAAGCTTCAGCCTCCATCAGGAACCGAGATCGCGCCCTTTAACCCCATCCTGCCCCCTGCATCCATCACTCAGGTCATGCTGCTCGCCAACCCACTCAAGgagcGCGTGCGCTTGCGCTACAAGCTGACGTATCTCCTGGGCGAGCGTCAGTACTCGGAGGTGGGCGAGCTGGATCAGTTTCCCCCGGCGGACAGATGGGGCTCCCTGTAGATCTCTGCTCCAACTCTTCCACGCTCTTTCCCGAGTGTCGTCACCCGTTTGTGCGGTTCATTTCCTTTCAGTCAGTGTTCTGCTGTAGCCTTGTGAAGCAGCGTTTGATGcttgatgtttgtgttttttttggggggggattCGAGCTGGATTTTAATACGATAACGCAACGTCAGCGATGATGCTCCGTCTGTCACGGCAATCACAGTTTCTGTCAAAATACCGTAGTAAAACGACAATTAATTggcatttgcaaaaaaacagagtacgttttaatttaagaaaaccTGTCATTTATTCGAAATGCGTCAATTACTACAAACTTGCCTGATTTAGGCCACGTTTAAAACCTGTGTGGTATCGTTGCGATACTAtaatagctgtttttaaaataccgttatttttgtattcatttagttattatgtaatgtttttcatacgtgtatagtttttattatttgtatttcacttttttagttttagctactTCAGTACATTACGTTGACGCAAACGATAAAAGTGTGAAGCGTAGCtaagtatgtttttaatttaaaaagtagcgaaatgttaaatatataggGTTTAGTCGACCCTTAAAGCACGATACGATACCACTGTGGTGTTGTatttagttaataaatatatatatatatattgtattgtatgcCATTTTTAGGTGTCATGGTTTTATTTCGAACAAAAAATGAAACCGCAAATCAGTTTCAATAGTGCAAAAATATCTCTTTTCATTGGCTATTTATTGACAAATCGAACAAAATCGACTTTTTCCGAGCACAGTATTAACTGTGGTATTTTGGCGTGAACCGCGGTAAATGGCGTCAAACTCCGAAGCCGAGCTGATACTGACGGTGTCACGTGACCTCGTGGAGCGCATCTAACCGCGATCTCGCTCTTTCCAGGCCGCTCCAGGCGTTCCTCGCGACAAACGAGCGTTTCAGCTTTGCTCTTTCTAGACCTTAGACTATTCCTTTCCCGCGAACTTCAGCTCTTGAAGTCATGACGCATCGGATCGAATGTACCTGCAGTCAGTCGAGTTTACATGGAGACCGCTGTGAGTTTACACGCGTAACGTCAGACTAACGTTACGTTGTctattttgagtttttatctGCCTCTGTTGTCGTTCAACACTGtttctggttttatttattgctgCTACAGGAACGTTTGGACTCAAGTTTCAGCATTACAGGCCGTCTCAGACAgtctttgtttaatattaacaGTGTTTTTGCCTGCAGGTTATGAGATGAAGGTCTCGATGGACAAGTGAGCGTTTTGTTTCATCAGATCAAGGCCTCGTGTGATTTTTGGTCCCAAACAAACCTTAATGTGTCCGACTGGAAGAAGAGGACAGCTGCTCCTCAGTTGTGTTCAAAGCGTTTAATTCATTACGGCCATGTGTTTAGACTCGGACAGCAGCGATCGAGCGAAtctcacacatacattatgaatagttcacccaaaaaggctacatttatgttttgcattttgttggtatctgcactttttttgcatgACGCTTAAACactaattgtaataaatacatatgttaTACACTATATGTTcacagtgatttttaaaaaaaaatatcttatttgtataaattttgGGTCCCGTACTAGtcttaactttaaaaaatgctttttgattttggggtgaattcaTGGTGATTTTGATGAGATTCGTTCGATTGATGATTGGGAATCTTGTTTGAACACGTTGGACTGTGTTTCTGGAGCATCTCTGCCGATTCGGACTTGTTTCAGGAAAATGGAGCTTCATTGTGCAACTGTATCAAGTGTTTCGAGTATTTCTGAGGAAccttgtgtgtgtattattacgAATCATTGTGTCTCTTTTTAAGAGCCAAAGCTTCATCTGATCCGATGTTGGTGACAATGGTTTAGGAGGACAAATGTAGAGCTTCTTAAAGGTTGTTATGGATGACTATGACAATGATGATGCACTGCTCTGGTGTTTAATAACGACTCCATCATGTGTGCTGCGCCATTAAATACTTATTAAATGAA

Function

symbol description
gga3 Enables small GTPase binding activity and ubiquitin binding activity. Involved in several processes, including negative regulation of amyloid-beta formation; protein destabilization; and protein transport. Located in lysosome and trans-Golgi network. Part of protein-containing complex.

NR:

description
PREDICTED: ADP-ribosylation factor-binding protein GGA3 isoform X2

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235025.1 True 4378 mRNA 0.48 17 2617272 2627120
XM_043235026.1 False 4297 mRNA 0.48 16 2617272 2627120

Neighbor

gene id symbol gene type direction distance location
LOC122341564 LOC107569685,LOC107751621,LOC107696336,LOC107573174 coding upstream 1299 2609239 ~ 2615973 (+)
LOC122333418 NA coding upstream 32294 2579542 ~ 2584978 (+)
LOC122342193 NA coding upstream 52317 2564887 ~ 2564955 (+)
evplb evplb,LOC107741346,LOC107677338,LOC107567223,LOC107696334,LOC107751618 coding upstream 74734 2513221 ~ 2542538 (+)
atg4db LOC107677346,LOC107696340,LOC107751629,LOC107571953,LOC107741356 coding upstream 108166 2501588 ~ 2509106 (+)
jpt1b hn1,LOC107696352,LOC107751437,LOC107677345,LOC107751632,LOC107565162,LOC107728178 coding downstream 20369 2647489 ~ 2658946 (+)
LOC122341575 LOC107678271,LOC107553656 coding downstream 642473 3269593 ~ 3272366 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding downstream 650049 3277169 ~ 3280555 (+)
LOC122333486 LOC107695665,LOC107601563 coding downstream 774306 3401426 ~ 3407130 (+)
cbx2 cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561 coding downstream 782657 3409777 ~ 3415087 (+)
G16358 NA non-coding upstream 14735 2601838 ~ 2602537 (+)
G16344 NA non-coding upstream 51429 2564488 ~ 2565843 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding upstream 70369 2516512 ~ 2546903 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding upstream 182760 2426408 ~ 2434512 (+)
G16227 NA non-coding upstream 243194 2314300 ~ 2374078 (+)
G16357 NA non-coding downstream 4675 2631795 ~ 2634380 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding downstream 33755 2660875 ~ 2667259 (+)
G16492 LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606 non-coding downstream 72160 2699280 ~ 2702201 (+)
G16529 NA non-coding downstream 649279 3276399 ~ 3276980 (+)
G16549 NA non-coding downstream 752161 3379281 ~ 3379545 (+)
G16347 NA other upstream 48273 2568084 ~ 2568999 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 297134 2024348 ~ 2320138 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 451579 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 502933 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 751487 1865713 ~ 1865785 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 14026 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 655870 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 693700 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 882956 3510076 ~ 3526914 (+)
LOC122332297 NA other downstream 1182050 3809170 ~ 3813344 (+)

Expression


Co-expression Network