LOC122341572 (LOC107751626,LOC107565147,LOC107696345)


Basic Information

Item Value
gene id LOC122341572
gene name LOC107751626,LOC107565147,LOC107696345
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2349775 ~ 2691512 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235030.1
TTGGTTACGCGCTTAAAGAAAACCAGAAGTCAcaagaaatgaaacattttttccccattagTGACTCAAACCGTAATAGAGGCACGCCGCTGTTCTTTAAGGGCAAGGCAAGTCATACTTGAGCTGTGCTTCTGTCAAGCTCTTATTGCAAGACAGAAGTCAAAGAGATGGCGGAATCATCAGCGAGTGGGTTTGTAGACCAGTTCATGTGTCCGGTCTGTTTGGACGGACTGAAGGAGCCGGTGACGATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACTGTTTGCTGGGAGCAGAAGGAGCAGGGGCCGCCGTACCGCTGTCCTCAATGCAGAGAGAGCTTCAGTCAGAGACCTCTACTGAAGAAGAACACTCTGATCGCTGAGATGATGGAGACGCTGCAGAAGACGTATCTGCGAGAGGCTGCTGTGGACTGTGATGTTTGCACCACGGAGAAGAACAGAGCTGTCAAGTCCTGTCTGCAGTGCTTGGCCTCCTTCTGTCAAACTCACCTTCAGCCTCACTATCAGTCTCCTGCGTTCATGAAGCACAAACTAGTCGAGGCCTCCAGAAACATTCAGGAGAACATCTGCCTCGTTCATGGGAAACTTCTGGAGCTTTACTGTCAGGATGACCACCAATGCATTTGTTGTTTGTGTGCTCCTAATCATAAAGGACACAGTGTGGTGTCTGTGGATTCAGAATTGACTATTAAGAAAGAGTTAGAAGCGACAGAGATGTCGTGTCAAAAGCTGATccaggagcgagagagaggtcACCGGGAACTCAGAGAAGCTGTGAAGCTGCTTACAAGTTCAGCGCTAGAGACCATGGAGGACGTCGAGAAGGTCTTCACCGAGCTCATCTGCTCTCTGGAGAAGAAACGCTCTGAAATTAAAGAGCAGATCAGAGTTCAGGAGAAGGCTGAGATCGATCGAGCAGAGGAACTTCACGAACATCTGGATCAAGAGCTGGCAGAACTcagaagaagacaaaaaaagatcAAGGAGCTTCTGACTAGTGATGACCCAATCCAGAATCTGAAGAGCTgccagtctgtgtgtgttttacccaCCTTTGAAGGCGGCATCACTCAACACACTCACctgttttttaaagacatttcagTCACAATGTTTAAGGAGGTTTTGGAGGACGTGTGTCAACAGCAAACTGCCAGAATATTCAGAGAAGtgtcaaatgtcTATGTCACAAACCCTCCAGAGCCAAAGACCGTGCATGATTTTTTGCAATACATCTGCGAGCTTCACTTGGATCTAAACACTGCGCACAGAAACATCAAACTGTCGCAAGACAACAGGAAAATATCATCTACTTTAAAGGCTCAGCAATATCCAGATCAACCAGAGCGGTTTAATGAGCGTCCCTATGTCTTGTCTAGAGACGGTTTGTCTGGTCGCTTTTACTGGGAGGTCAAATGCAGAGGGAACGAATGGGCTGTTGGAGTTTGTTACAAAGGAATCAGGCGTAAAGGAAGCACTCTCGACTGCATACTTGGCTTCAACAAAATGTCGTGGAGACTGGGTTATTTTCTGCAGGAATTCGGTTTTTATCACGCTCAACAAAAAGTCCCGGTCCCTGTCGCCTCTAGAATAGGAGTGTATCTGGATCACAGAGCAGGGACTCTGGccttcttcagcgtctctgaTACAATGACTCTCCTTCACAGAGTCCAGACCACTTTCACCGAACCCTTATACCCTGCGTTTAAGGTAGGAGCCGGTTCATCTGCCAGGATCATAGAGCTGAAAAAAGACCAGTTTTGCACTGCGGACGAAAGCTTGTATGCGGACACAACTTTTCTTTACGAACGCATGAGATTTTTTCTTCAAGGGACTTCCTAGTGAAATGAAAATAGCATGATAACAGTAAAAAGTTTGCAATATGAAGCAGGCTAATTTTGTACAAGCTAAGTAAATGGAGCACCAGAAGCCAAGCGCATTTAAgttagaaatgtaataaaataaataaaataggaaaaggtggataaaaaaacaacaccaacaaAGAAATGTATAACGTAATTTAACTgatctaattaaaaaatgcGAAAGGTCATGCAGGGTACCGCTTTTCCTACATTAAatctcttttaataataaaagtttattattattggttatG
>XM_043235031.1
TCTTTAAACATAAACGAAACCGACGAAGCATATTTCTTCACCTCACGTGAGATTTCAGCTGCTGTAATAGAGCCGCTACACTTCTGGGGCAACCTggaaaacaaataacatttgagTTGTGTCTCTGACGAGGTAGTAATGACCTTTTTATGCTATGCTATGTCTGCTTTTCAACAGAAAACGCACGCAGTGTATTAGTTTATAAGCGTGTGCTGACAGTATATGATAGTCCTTCCTTAAGGTTatgcttttgttgtgtttggTTAGAAACTTTGGTTAGAGATCCACACTTTCACTGTTTTCTTGGCAATACAGCTCTTATTGCAAGACAGAAGCCAAAGAGATGGCGGAATCATCAGCGAGTGGGTTTGTAGACCAGTTCATGTGTCCGGTCTGTTTGGACGGACTGAAGGAGCCGGTGACGATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACTGTTTGCTGGGAGCAGAAGGAGCAGGGGCCGCCGTACCGCTGTCCTCAATGCAGAGAGAGCTTCAGTCAGAGACCTCTACTGAAGAAGAACACTCTGATCGCTGAGATGATGGAGACGCTGCAGAAGACGTATCTGCGAGAGGCTGCTGTGGACTGTGATGTTTGCACCACGGAGAAGAACAGAGCTGTCAAGTCCTGTCTGCAGTGCTTGGCCTCCTTCTGTCAAACTCACCTTCAGCCTCACTATCAGTCTCCTGCGTTCATGAAGCACAAACTAGTCGAGGCCTCCAGAAACATTCAGGAGAACATCTGCCTCGTTCATGGGAAACTTCTGGAGCTTTACTGTCAGGATGACCACCAATGCATTTGTTGTTTGTGTGCTCCTAATCATAAAGGACACAGTGTGGTGTCTGTGGATTCAGAATTGACTATTAAGAAAGAGTTAGAAGCGACAGAGATGTCGTGTCAAAAGCTGATccaggagcgagagagaggtcACCGGGAACTCAGAGAAGCTGTGAAGCTGCTTACAAGTTCAGCGCTAGAGACCATGGAGGACGTCGAGAAGGTCTTCACCGAGCTCATCTGCTCTCTGGAGAAGAAACGCTCTGAAATTAAAGAGCAGATCAGAGTTCAGGAGAAGGCTGAGATCGATCGAGCAGAGGAACTTCACGAACATCTGGATCAAGAGCTGGCAGAACTcagaagaagacaaaaaaagatcAAGGAGCTTCTGACTAGTGATGACCCAATCCAGAATCTGAAGAGCTgccagtctgtgtgtgttttacccaCCTTTGAAGGCGGCATCACTCAACACACTCACctgttttttaaagacatttcagTCACAATGTTTAAGGAGGTTTTGGAGGACGTGTGTCAACAGCAAACTGCCAGAATATTCAGAGAAGtgtcaaatgtcTATGTCACAAACCCTCCAGAGCCAAAGACCGTGCATGATTTTTTGCAATACATCTGCGAGCTTCACTTGGATCTAAACACTGCGCACAGAAACATCAAACTGTCGCAAGACAACAGGAAAATATCATCTACTTTAAAGGCTCAGCAATATCCAGATCAACCAGAGCGGTTTAATGAGCGTCCCTATGTCTTGTCTAGAGACGGTTTGTCTGGTCGCTTTTACTGGGAGGTCAAATGCAGAGGGAACGAATGGGCTGTTGGAGTTTGTTACAAAGGAATCAGGCGTAAAGGAAGCACTCTCGACTGCATACTTGGCTTCAACAAAATGTCGTGGAGACTGGGTTATTTTCTGCAGGAATTCGGTTTTTATCACGCTCAACAAAAAGTCCCGGTCCCTGTCGCCTCTAGAATAGGAGTGTATCTGGATCACAGAGCAGGGACTCTGGccttcttcagcgtctctgaTACAATGACTCTCCTTCACAGAGTCCAGACCACTTTCACCGAACCCTTATACCCTGCGTTTAAGGTAGGAGCCGGTTCATCTGCCAGGATCATAGAGCTGAAAAAAGACCAGTTTTGCACTGCGGACGAAAGCTTGTATGCGGACACAACTTTTCTTTACGAACGCATGAGATTTTTTCTTCAAGGGACTTCCTAGTGAAATGAAAATAGCATGATAACAGTAAAAAGTTTGCAATATGAAGCAGGCTAATTTTGTACAAGCTAAGTAAATGGAGCACCAGAAGCCAAGCGCATTTAAgttagaaatgtaataaaataaataaaataggaaaaggtggataaaaaaacaacaccaacaaAGAAATGTATAACGTAATTTAACTgatctaattaaaaaatgcGAAAGGTCATGCAGGGTACCGCTTTTCCTACATTAAatctcttttaataataaaagtttattattattggttatGCTAAATCATTAATCATGATGGAAATCAGTATTTGTtagataagttttttttttttttttttttaaataacaatgattGGTTTCAGATTTGTgttaataaatttcattttaaatacaaggTTTGTATACAAATAAtggattttgatttaaatgacgAAATGTGATTTTTGGAATTAATGTGCCCATAATTTTGcttgcatttttatcatttagtttttatatcattacaatcatttctttacattttaaac

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235030.1 False 2151 mRNA 0.45 7 2685610 2691262
XM_043235031.1 True 2577 mRNA 0.42 7 2349775 2691512

Neighbor

gene id symbol gene type direction distance location
LOC122341598 NA coding upstream 86 2341531 ~ 2349689 (+)
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding upstream 9682 2323700 ~ 2340093 (+)
LOC122333376 NA coding upstream 53730 2293303 ~ 2296045 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding upstream 79311 2267588 ~ 2270464 (+)
LOC122341668 LOC107755616,LOC107672923 coding upstream 82267 2261610 ~ 2267508 (+)
LOC122341575 LOC107678271,LOC107553656 coding downstream 578081 3269593 ~ 3272366 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding downstream 585657 3277169 ~ 3280555 (+)
LOC122333486 LOC107695665,LOC107601563 coding downstream 709914 3401426 ~ 3407130 (+)
cbx2 cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561 coding downstream 718265 3409777 ~ 3415087 (+)
tmem100a tmem100a,LOC107601598,LOC107710980,LOC107696362,LOC107695692,LOC107718941,LOC107567563 coding downstream 794640 3486152 ~ 3490051 (+)
G16240 NA non-coding upstream 47647 2242286 ~ 2302128 (+)
LOC122341670 NA non-coding upstream 95120 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 104843 2243357 ~ 2244932 (+)
G16246 NA non-coding upstream 106640 2192086 ~ 2243135 (+)
G16218 ddx39ab,LOC107563749,LOC107755611,LOC107672936,LOC107708265,LOC107691101,LOC107563747 non-coding upstream 199290 2143869 ~ 2150485 (+)
G16492 LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606 non-coding downstream 7768 2699280 ~ 2702201 (+)
G16529 NA non-coding downstream 584887 3276399 ~ 3276980 (+)
G16549 NA non-coding downstream 687769 3379281 ~ 3379545 (+)
G16556 NA non-coding downstream 693036 3384548 ~ 3476586 (+)
G16575 NA non-coding downstream 848904 3540416 ~ 3540798 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 29637 2024348 ~ 2320138 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 184082 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 235436 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 483990 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 484546 1619312 ~ 1865229 (+)
G16530 LOC107601546 other downstream 591478 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 629308 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 818564 3510076 ~ 3526914 (+)
LOC122332297 NA other downstream 1117658 3809170 ~ 3813344 (+)
G16667 NA other downstream 1256111 3947623 ~ 3985611 (+)

Expression


Co-expression Network