LOC122341575 (LOC107678271,LOC107553656)



Basic Information


Item Value
gene id LOC122341575
gene name LOC107678271,LOC107553656
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3269593 ~ 3272366 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043235036.1
TAATGACCCACGTTAGACTTAAACAAGTGATTGATCCGCCCATGTGCGCAGTAGATTTCTCTGACTATGGCTATAACAGAAGCGTTACTCTTGCAGGGCTCTGGGATAGGTACTGTATTTGGTGCCCTGCTGTTGTGTTTGGTTATTTATCTGTTCTCCATCAGCTCCAGGTCTAAGGATGACGGAAATAAGTATCCCCCAGGACCCAAACCTCTGCCACTTCTGGGGAACCTGCACACGCTCGACCTCAAGAAAACCTACCTGAGCCTTTGGGAGCTGTCAAAACAGTATGGGTCGGTTTACACGGTGCACATGGGCCCCAGAAAGGTGGTGATATTGTCAGGATACAAGGCTGTCAAGCAGGCGCTAGTACACCTTTCAGAGGAGTTTGGAGACCGAGATGTTACTCCCATATTTCATGATTTCAACAAGGGATATGGGATTGCATTTTCCAACGGTGAAAACTGGAGGGAAATGAGACGCTTTGCTCTTTCAAGCCTGCGAGACTTTGGAATGGGCAAGAAAAGAAGCGAAGAGATTATCATTGAAGAATCGCAATGCTTAAAAGAGGAATTTGCGAAATATATGGGAAAACCATTTGAAACAACTCTACCGATGGCCATGGCTGTCTCAAACGTCATCTCTGCCATTGTCTACAACACCAGATTCGAATATAGCAACACTAATCTACATCGCATGGTTAAACGATCTTATGAAAACATGAGGTTAACCGGATCAGCTTCAGTTCAGCTCTACAACATGTTTCCTTGGATCCGTCCTCTTGTGGCGAATCGGAAACGCATCGTGAGCAACGTCAATGAAACCATAAGGCAAAATGAGGAAATAATAAATGGCCTGAGGAAGACTATAAACCCTCAGGACCCCAAAGGAATCGCTGAATGTTTCCTGATACGACAGCAAAAAGACAAGGAATCTGGCAAAACAGACTCTTTCTACAATTCGATGAATTTATACTATACAATGAACAACATATTTGGTGCTGGTACCGACACCACGGCCACAACACTGCGCTGGGGTCTTCTGCTCATGGCCAAATACCCTGAAATACAAACTAAGGTCCACAATGAGATTGACCAAGTGATCGGTGGACGTCAGCCAGTGGTGGAAGACAGGAAGAACTTACCATATACAGATGCTGTGATCCATGAAACTCAGAGATTTGGAAATATATCACCCATCGGTTCCCCGCGTCGCACCACCTGTGATGTTCACCTGAACGGATATTTCATAAAGAAGggtacCAGTGTGTGGCCTCTATTGGTATCTGTACTTATGGATGAAAATGAGTGGGAAACTCCTGACCGCTTCAACCCAGGACACTTCCTAAATAAGCAGGGCCAGTTTGTCAAAAAGGACGCCTTCTTGCCCTTCTCTGCAGGTCGCAGGGTTTGTCTTGGAGAGGGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACCTCCCTTCTTCAGCATTTCCGCTTCACTCCTCCTCCTGGAGTGTCTGAAGATGATCTGGATCTCAAACCAGTCGTGGGCTTCACCCTGAACCCGGCCCAACACAAACTGTGCGCAGTCAAGCGGTCTTAACCTGCTATATTTGCTACACTTTATGTCTGGTTTGCTTTCGTTTTGTTCGCTTGTATACCGCATTTGCTCATTTAGCTTTCCACTGAAAGCACATtcagtgttcattactttttAGATGATACCTATAGTGCCTTTGCTTTTCTCTACAAAAGCGTGTAAATACATCTGTCAATTTAAaatcatgcaaatatattttgtaaaacttaTGATAGCGCTTAAATTGCATTGCCTACAGATGCTTCCTAAAAGATGACGGATATTCAATAATACAatgcttaaataaatgaacttttctaca

Function


NR:

description
PREDICTED: cytochrome P450 2K1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043235036.1 True 1885 mRNA 0.44 9 3269593 3272366
Loading

Neighbor


gene id symbol gene type direction distance location
LOC122341572 LOC107751626,LOC107565147,LOC107696345 coding upstream 578081 2349775 ~ 2691512 (+)
jpt1b hn1,LOC107696352,LOC107751437,LOC107677345,LOC107751632,LOC107565162,LOC107728178 coding upstream 610647 2647489 ~ 2658946 (+)
gga3b gga3,LOC107751623,LOC107677341,LOC107751620,LOC107696338,LOC107573175 coding upstream 642473 2617272 ~ 2627120 (+)
LOC122341564 LOC107569685,LOC107751621,LOC107696336,LOC107573174 coding upstream 653620 2609239 ~ 2615973 (+)
LOC122333418 NA coding upstream 684615 2579542 ~ 2584978 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding downstream 4803 3277169 ~ 3280555 (+)
LOC122333486 LOC107695665,LOC107601563 coding downstream 129060 3401426 ~ 3407130 (+)
cbx2 cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561 coding downstream 137411 3409777 ~ 3415087 (+)
tmem100a tmem100a,LOC107601598,LOC107710980,LOC107696362,LOC107695692,LOC107718941,LOC107567563 coding downstream 213786 3486152 ~ 3490051 (+)
tmem220 tmem220,LOC107570714,LOC107579199 coding downstream 557283 3829649 ~ 3831319 (+)
G16492 LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606 non-coding upstream 567392 2699280 ~ 2702201 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding upstream 602334 2660875 ~ 2667259 (+)
G16357 NA non-coding upstream 635213 2631795 ~ 2634380 (+)
G16358 NA non-coding upstream 667056 2601838 ~ 2602537 (+)
G16344 NA non-coding upstream 703750 2564488 ~ 2565843 (+)
G16529 NA non-coding downstream 4033 3276399 ~ 3276980 (+)
G16549 NA non-coding downstream 106915 3379281 ~ 3379545 (+)
G16556 NA non-coding downstream 112182 3384548 ~ 3476586 (+)
G16575 NA non-coding downstream 268050 3540416 ~ 3540798 (+)
G16576 NA non-coding downstream 268591 3540957 ~ 3541640 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 622837 2641146 ~ 2646756 (+)
G16347 NA other upstream 700594 2568084 ~ 2568999 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 949455 2024348 ~ 2320138 (+)
G16530 LOC107601546 other downstream 10624 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 48454 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 237710 3510076 ~ 3526914 (+)
LOC122332297 NA other downstream 536804 3809170 ~ 3813344 (+)
G16667 NA other downstream 675257 3947623 ~ 3985611 (+)

Expression


LOC122341575(LOC107678271,LOC107553656) Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
End of interactive chart.

LOC122341575(LOC107678271,LOC107553656) Expression in each Bioproject

Bar chart with 2 bars.
LOC122341575(LOC107678271,LOC107553656) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network