atg4db (LOC107677346,LOC107696340,LOC107751629,LOC107571953,LOC107741356)


Basic Information

Item Value
gene id atg4db
gene name LOC107677346,LOC107696340,LOC107751629,LOC107571953,LOC107741356
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2501588 ~ 2509106 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235039.1
GGCGGAGTTAAAGCCAGGCAGCGACATCTATTCGGTGGCGTCGCGGTGTGTTTGTACTGCGCAAAGTTTCCAGCCAAATATTGCCATATTCACAATGACATGACAGTTAGAGCACCCTTTAAGCTTCTCTGGCAGTCCAGAAGAGTCACAGCGGCTCGCTTCCCTTCTCTGATTGGACAGCGGGGATTCATCGCCATGGCAaccgtatcctgatcatcccATCATGGATGTGAGTGATGAGCGTGACGGCGCGACGGAGGCCGCAGATGACCTCGCGTCGTTTGAGGTGGTCAACCTGTCGAACCCGGGCCCGCGGGATCTGGGCTCAGACGTCGACGGACGCCTCCAGGAGCCAAAGGACAAGACCAAACTCAAAACCAAACTCATTTCAGCGTGGAACAACGTCAAATATGGAGGCTGGTCTCTGAAGAGCAagcgtgtgtgtctgctgggaCAGTGCTATCAGCTGAGCTACAGTGgAGAGCGGGAGAGCTTCCGGCGGGCgttctcctctcttctctggatGACCTACAGGAGAGGTTTCCCGCCGCTGGACGGCACGGTCCTCACGTCTGACGCGGGATGGGGCTGCATGCTCCGCAGCGCACAGATGCTGTTAGCTCACGGGCTGATGCTGCACACGATGCCCGCGGGCTGGACGTGGCCTGCGGCGCACCATCAGACCAAAGACGACCTGGAGGTGCTGGACGCTCACATGCTGGAGGACTCCTTCAGAGAGGGCAAGGCTCGCAGATGCAGCCTGGGAACGGCTCTGGACTGCCCTGCTCAGGAGGAGCGCTCTCACAGGAGGGTGGTGTCCTGGTTCGGTGACCTGTCCTCCGCTCCGTTCGGTCTGCACCGGCTGGTGGAGCTGGGCAGGGCCTCGGGGAAGAGAGCGGGCGACTGGTACGGACCGGCCATCGCTGCTCACATACTGCAGAAGGCCGTGGCAGCGTCCGAGGTGTCCGATCTGGCGGTGTACGTGGCACAGAACTGCACAGTGTATGTGGGAGACGTGTTGGACCTGTGCGGGACGCCCCGTACCGACCTCTCCGCGAGGCGCAGGTCCGGCTGGAGGTCGCTGGTTCTGCTGGTGCCTGTGCGTTTGGGCTCGGATGTGTTGAATCGGGCCTACACCGGGTGTGTGAAGAGGCTGCTGGAGCTGCGGTGCTGCGTGGGGATCATCGGAGGGAAACCCAAACACTCGCTGTTTTTCGTGGGATTCCAGGGCGATCAGCTGATTTATTTGGATCCTCATTACTGTCAGGCCGCTGTTGATGTCCAGCAAGACAACTTCCCTTTAGAGTCGTTCCACTGTAAAACGGTCAGGAAGATGCCGTTTAGCCGCATGGACCCGAGCTGCGCCGTGGGTTTCTACGCCGGAAGCAGAGAGGACTTCCAGGCTCTGTGTTCAGACGTCACCAAGGCTCTGACGTCATCCGAGGAGAAGTACCCCATCTTCACGTTTGTGGAGGGTCGCAGCGAGGAGGAAATGAGCTTCACGTCAGACTCGGCCGCTCGTGTACAAAAAATAGATGGACCGGGCCGAACCAAAAACAAGAGCAGTTTGGAGGAGTTTGTGCTCTTGTGACTTCCTCCAGTTACAGTCATCTGATCATGAATGTAGGTGCTGTTGCTCTTTGTGGGTCTTTTTTAAAGACGgctgctgttgttttcttgtcTGTGTGTAAGGAGAACGCGAGGAGCTCGCTGAGCAGGTGGCTAAGCATATTACATGCGTCTGGTGTGACGCTAATGACAGCAGACAGGACAGATGAGAGGCGCAGACGTTACTCTTTGACAGGCTAACATGGGATTAGGCTGCTGTTAACACTGTGATTTAGTCGCCGTTTATCCGTTTGGCTGTTCGGACTGTTATATAAATggagagcttttattttgatgttaatgTTTCGTAGATAAAGCAAAAAGTGTACCGTCACACACATTTCTATCCAAGTTCTTATGACGTACGCTTCCATTACCAGTACTTTTGAGGTGTTTAATTtcctgtttttcagtgttttgttttttggaagtATTGACgttttttttagatgtatgATGACCAATAAAACTTTTCTGGTTAGGCAACATATCCGCTGTTTACACACGCGATTACTGACAATCAATATCAATTtcttttatgaatattaattccTTAATGGtcttattataaatatgcaaataaagtttatttgtttttta

Function

NR:

description
PREDICTED: cysteine protease ATG4D-like

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235039.1 True 2208 mRNA 0.53 12 2501588 2509106

Neighbor

gene id symbol gene type direction distance location
LOC122341595 NA coding upstream 572 2497983 ~ 2501016 (+)
mast1b mast1b,LOC107741348,LOC107677342,LOC107571949,LOC107696309,LOC107567212 coding upstream 26590 2449475 ~ 2474998 (+)
junbb junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 coding upstream 78038 2422071 ~ 2423550 (+)
LOC122341566 LOC107741349,LOC107677340,LOC107696333,LOC107575050,LOC107567211 coding upstream 130952 2357686 ~ 2370636 (+)
LOC122341598 NA coding upstream 151899 2341531 ~ 2349689 (+)
evplb evplb,LOC107741346,LOC107677338,LOC107567223,LOC107696334,LOC107751618 coding downstream 4115 2513221 ~ 2542538 (+)
LOC122342193 NA coding downstream 55781 2564887 ~ 2564955 (+)
LOC122333418 NA coding downstream 70436 2579542 ~ 2584978 (+)
LOC122341564 LOC107569685,LOC107751621,LOC107696336,LOC107573174 coding downstream 100133 2609239 ~ 2615973 (+)
gga3b gga3,LOC107751623,LOC107677341,LOC107751620,LOC107696338,LOC107573175 coding downstream 108166 2617272 ~ 2627120 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding upstream 67076 2426408 ~ 2434512 (+)
G16227 NA non-coding upstream 127510 2314300 ~ 2374078 (+)
G16310 NA non-coding upstream 145517 2296867 ~ 2356071 (+)
LOC122341670 NA non-coding upstream 246933 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 256656 2243357 ~ 2244932 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding downstream 7406 2516512 ~ 2546903 (+)
G16344 NA non-coding downstream 55382 2564488 ~ 2565843 (+)
G16358 NA non-coding downstream 92732 2601838 ~ 2602537 (+)
G16357 NA non-coding downstream 122689 2631795 ~ 2634380 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding downstream 151769 2660875 ~ 2667259 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 181450 2024348 ~ 2320138 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 335895 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 387249 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 635803 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 636359 1619312 ~ 1865229 (+)
G16347 NA other downstream 58978 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 132040 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 773884 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 811714 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1000970 3510076 ~ 3526914 (+)

Expression


Co-expression Network