junbb (junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104)


Basic Information

Item Value
gene id junbb
gene name junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2422071 ~ 2423550 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235048.1
GATTCCGATCCACGCGAACAAGCGCAACAGAGCGAATCAAACGAGCATCGTTCCCAAAGAGCGTTCCCTCGCAACATCGCGCTATTCCTTGGGACGCCTTCGAGAGGAGCATCGAAGCAGAGTTTCGTCTTTTATCTCACGCTCGAACCCCAGAAGAACTCTATGAGCACGAAAATGGAGCAGCCGTTCTACCACGACGACTCGTTTCTGTTGGGTTACGGCCACAGCGACGCGGCACTGCACGACTACAAACTCCAGAAAGCGGGCATGAACTTGAACCTGACCGAGCCCTATCGGAACCTCAAATCGGATCTGTATCAGACCGGCGGCGTCGATATGGGCTCGCTCAAGCTGGCCTCGCCGGAGCTGGAGAGGCTCATCATCCAGAACAGCAACGGGGTGCTGACGACGCCCACCCCGGGCCAGTACCTCTACGGCCGGGGCATCACCGACGAGCAGGAGGGCTTCGCGGAGGGCTTCGTCAAGGCTCTGGACGATCTCCACAAGATGAACCAGATGCCCCCGCCCAACGTGTCGATTGGAGCCGGCGGCGTGACGACGTGCTCGACGACCGCGTCCGTCTTTGGCTCCTCCCTGCAGTCTGAGCCTCCCATTTACACGACGCTGAACGCGTACTGCCCGGCAGCGCCCAGCCACCCGTCCGCCACCATCAGCTACCTGCCGCCGCAGAGCCAGCACCCGGAACCCGCGCAGGCGTTCCAGCACTCCGGCGTCCTCCCGCAGCGCTTCGCGAACTTGAAAGAGGAGCCCCAGACCGTTCCCGACATGCACAGCAGCGACGGCTCGCCGCCCATGTCTCCGATCGACATGGAGAGCCAGGAGCGCATCAAGGCGGAGCGCAAGAGGCTCCGGAACCGACTGGCGGCCACCAAGTGCCGGCGGCGCAAGCTCGAGCGCATCGCGCGGCTGGAGGAGAAGGTCAAGGTGCTCAAGTCCGACAACGCCGGGCTGTCCAACACGGCCTCCGTGCTGCGGGACCAGGTGGCCCAGCTCAAACAGAAGGTCCTGAGGCACATGAACAGCGGCTGTCAGCTGATGTTGACCAGCAAGATGGAAGCGTTTTAAGCGCGCTCGGACCCTTACGCGGATGCAACACTGGAAATCGTTTGTGTTCCTCGGCCGAACGGAAGCCGAGAGCCTTCGGACGCGTTCTGGGTTCCGAATAAAACGAACGGAGCGTGACGGAACGGACTCCGAGCCCCCCGGAGACGGACGGGGGTCACGGGCGAAGCGGGAAGGCCGGTCTCGGTatcaacaatgtgtttttttcgtCATGATCAACTGCATTTGATCACGAGAACGCATCTGATATTGTCGTGCAGTTCCAGAACTCATAACTTATTGTACTGATCGGGTTGATCCCGACGCCGTGTGTTAACGATGTCACATGTTTACAAtgtctctctttatttttttatgtgtgcgatttgtttatttaagtaAAGGTTTTGAAATACGA

Function

symbol description
junbb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within fin regeneration and lymph vessel development. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including Kupffer's vesicle; fin; nervous system; optic vesicle; and pectoral fin bud. Orthologous to human JUNB (JunB proto-oncogene, AP-1 transcription factor subunit).

NR:

description
PREDICTED: transcription factor jun-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031101 fin regeneration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09028 JUNB; transcription factor jun-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235048.1 True 1480 mRNA 0.59 1 2422071 2423550

Neighbor

gene id symbol gene type direction distance location
LOC122341566 LOC107741349,LOC107677340,LOC107696333,LOC107575050,LOC107567211 coding upstream 51435 2357686 ~ 2370636 (+)
LOC122341598 NA coding upstream 72382 2341531 ~ 2349689 (+)
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding upstream 81978 2323700 ~ 2340093 (+)
LOC122333376 NA coding upstream 126026 2293303 ~ 2296045 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding upstream 151607 2267588 ~ 2270464 (+)
mast1b mast1b,LOC107741348,LOC107677342,LOC107571949,LOC107696309,LOC107567212 coding downstream 25925 2449475 ~ 2474998 (+)
LOC122341595 NA coding downstream 74433 2497983 ~ 2501016 (+)
atg4db LOC107677346,LOC107696340,LOC107751629,LOC107571953,LOC107741356 coding downstream 78038 2501588 ~ 2509106 (+)
evplb evplb,LOC107741346,LOC107677338,LOC107567223,LOC107696334,LOC107751618 coding downstream 89671 2513221 ~ 2542538 (+)
LOC122342193 NA coding downstream 141337 2564887 ~ 2564955 (+)
G16227 NA non-coding upstream 47993 2314300 ~ 2374078 (+)
G16310 NA non-coding upstream 66000 2296867 ~ 2356071 (+)
G16240 NA non-coding upstream 119943 2242286 ~ 2302128 (+)
LOC122341670 NA non-coding upstream 167416 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 177139 2243357 ~ 2244932 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding downstream 2858 2426408 ~ 2434512 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding downstream 92962 2516512 ~ 2546903 (+)
G16344 NA non-coding downstream 140938 2564488 ~ 2565843 (+)
G16358 NA non-coding downstream 178288 2601838 ~ 2602537 (+)
G16357 NA non-coding downstream 208245 2631795 ~ 2634380 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 101933 2024348 ~ 2320138 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 256378 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 307732 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 556286 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 556842 1619312 ~ 1865229 (+)
G16347 NA other downstream 144534 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 217596 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 859440 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 897270 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1086526 3510076 ~ 3526914 (+)

Expression


Co-expression Network