LOC122341598


Basic Information

Item Value
gene id LOC122341598
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2341531 ~ 2349689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235064.1
CAGAGCTGTTGAGTGTCTGTCTCTCCGTGTAAAATGGCAGAAGCCAGAATTTCTCAGGATGAGTTCTTGTGTGCAGTGTGTCTGGATCTCCTGAAGGATCCAGTGACTACTTCCTGTGGACACAGTTACTGTAAGAGCTGTATTACAGACTGCTGGGATCAAGAGGATCAGAAGAGAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTAGCTAGAAACACCATGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGATGACTGTTACGCCGGAGATGGAGATGTTCAGTGTGACGTCTGTACTGGAAGAAAATACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCAGAATCACCTCGAGCAACGAGGTTGGAAGAAACACAATCTGACCGAAGCCACTGGACAACTGCAGGAGATGATCTGCCAGAAACATCAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAGAAGTGTATATGTGGGCTGTGTAGGATGGGTGAACATAAAAACCACGACACTGTATCAGCTGCAGACCAGAGGACAGAGAAACAGAAAGAGTTAGAAGCGACAGAGATGTCGTGTCAAAAGCTGATccaggagcgagagagaggtcACCGGGAACTCAGAGAAGCTGTGAAGCTGCTTACAAGTTCAGCGCTAGAGACCATGGAGGACGTCGAGAAGGTCTTCACCGAGCTCATCTGCTCTCTGGAGAAGAAACGCTCTGAAATTAAAGAGCAGATCAGAGTTCAGGAGAAGGCTGAGATCGATCGAGCAGAGGAACTTCACGAACATCTGGATCAAGAGCTGGCAGAACTcagaagaagacaaaaaaagatcAAGGAGCTTCTGACTAGTGATGACCCAATCCAGAATCTGAAGAGCTgccagtctgtgtgtgttttacccaCCTTTGAAGGCGGCATCACTCAACACACTCACctgttttttaaagacatttcagTCACAATGTTTAAGGAGGTTTTGGAGGACGTGTGTCAACAGCAAACTGCCAGAATATTCAGAGAAGtgtcaaatgtcTATGTCACAAACCCTCCAGAGCCAAAGACCGTGCATGATTTTTTGCAATACATCTGCGAGCTTCACTTGGATCTAAACACTGCGCACAGAAACATCAAACTGTCGCAAGACAACAGGAAAATATCATCTACTTTAAAGGCTCAGCAATATCCAGATCAACCAGAGCGGTTTAATGAGCGTCCCTATGTCTTGTCTAGAGACGGTTTGTCTGGTCGCTTTTACTGGGAGGTCAAATGCACAGGGAACGAATGGGCTGTTGGAGTTTGTTACAAAGGAATCAGGCGTAAAGGAAGCACTCTCGACTGCATACTTGGCTTCAACAAAATGTCGTGGAGACTGGGTTATTTTCTGCAGGAATTCGGTTTTTATCACGCTCAACAAAAAGTCCCGGTCCCTGTCGCCTCTAGAATAGGAGTGTATCTGGATCACAGAGCAGGGACTCTGGccttcttcagcgtctctgaTACAATGACTCTCCTTCACAGAGTCCAGACCACTTTCACCGAACCCTTATACCCTGCGTTTAAGGTAGGAGCCGGTTCATCTGCCAGGATCATAGAGCTGAAAAAAGACCAGTTTTGCACTGCGGACGAAAGCTTGTATGCGGACACAACTTTTCTTTACGAACGCATGAGATTTTTTCTTCAAGGGACTTCCTAGTGAAATGAAAATAGCATGATAACAGTAAAAAGTTTGCAATATGAAGCAGGCTAATTTTGTACAAGCTAAGTAAATGGAGCACCAGAAGCCAAGCGCATTTAAgttagaaatgtaataaaataaataaaataggaaaaggtggataaaaaaacaacaccaacaaAGAAATGTATAACGTAATTTAACTgatctaattaaaaaatgcGAAAGGTCATGCAGGGTACCGCTTTTCCTACATTAAatctcttttaataataaaagtttattgTTATTGGTTATGCTAAATCATTAATCATGATGGAAATCAGTATTTGTtagataagtttttttttttttttttaaataacaatgattGGTTTCAGATTTGTgttaataaatttcattttaaatacaaggTTTGTATACAAATAAtggattttgatttaaatgacgAAATGTGATTTTTGGAATTAATGTGCCCATAATTTTGcttgcatttttatcatttagtttttatatcattacaatcatttctttacattttaaacattttaatcattttttattttttcattatttatcacaACATGGAGGTCAGTTCATTTGGACCTCAGCTCATAGTCTCTCTATCATGCTGTTATTATGACATTCCTTCCTATCATCCAGTGATTTACCTAAATGATATATGTTTTAAGatcaataataatagttaaatgATGCTCTGTGATcgattgtataaaataaataaatgaacaaacattt

Function

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0002274 myeloid leukocyte activation biological_process
GO:0002376 immune system process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235064.1 True 2484 mRNA 0.41 7 2341531 2349689

Neighbor

gene id symbol gene type direction distance location
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding upstream 1438 2323700 ~ 2340093 (+)
LOC122333376 NA coding upstream 45486 2293303 ~ 2296045 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding upstream 71067 2267588 ~ 2270464 (+)
LOC122341668 LOC107755616,LOC107672923 coding upstream 74023 2261610 ~ 2267508 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding upstream 200710 2131218 ~ 2140821 (+)
LOC122341572 LOC107751626,LOC107565147,LOC107696345 coding downstream 86 2349775 ~ 2691512 (+)
LOC122341566 LOC107741349,LOC107677340,LOC107696333,LOC107575050,LOC107567211 coding downstream 7997 2357686 ~ 2370636 (+)
junbb junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 coding downstream 72382 2422071 ~ 2423550 (+)
mast1b mast1b,LOC107741348,LOC107677342,LOC107571949,LOC107696309,LOC107567212 coding downstream 99786 2449475 ~ 2474998 (+)
LOC122341595 NA coding downstream 148294 2497983 ~ 2501016 (+)
G16240 NA non-coding upstream 39403 2242286 ~ 2302128 (+)
LOC122341670 NA non-coding upstream 86876 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 96599 2243357 ~ 2244932 (+)
G16246 NA non-coding upstream 98396 2192086 ~ 2243135 (+)
G16218 ddx39ab,LOC107563749,LOC107755611,LOC107672936,LOC107708265,LOC107691101,LOC107563747 non-coding upstream 191046 2143869 ~ 2150485 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding downstream 76719 2426408 ~ 2434512 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding downstream 166823 2516512 ~ 2546903 (+)
G16344 NA non-coding downstream 214799 2564488 ~ 2565843 (+)
G16358 NA non-coding downstream 252149 2601838 ~ 2602537 (+)
G16357 NA non-coding downstream 282106 2631795 ~ 2634380 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 21393 2024348 ~ 2320138 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 175838 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 227192 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 475746 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 476302 1619312 ~ 1865229 (+)
G16347 NA other downstream 218395 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 291457 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 933301 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 971131 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1160387 3510076 ~ 3526914 (+)

Expression


Co-expression Network