Item | Value |
---|---|
gene id | axin1 |
gene name | axin1,LOC107727128,LOC107703383,LOC107745589,LOC107674664 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056701.1 |
NCBI id | CM032070.1 |
chromosome length | 30200998 |
location | 16957962 ~ 16998780 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
axin1 | Predicted to enable protein homodimerization activity. Involved in several processes, including negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; positive regulation of MAPK cascade; and regionalization. Acts upstream of or within several processes, including embryonic morphogenesis; fin regeneration; and regionalization. Part of beta-catenin destruction complex. Is expressed in forebrain; habenula; head; and midbrain. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human AXIN1 (axin 1). |
description |
---|
PREDICTED: axin-1 isoform X1 |
id | name | namespace |
---|---|---|
GO:0043547 | positive regulation of GTPase activity | biological_process |
GO:0090244 | Wnt signaling pathway involved in somitogenesis | biological_process |
GO:0038032 | termination of G protein-coupled receptor signaling pathway | biological_process |
GO:0021797 | forebrain anterior/posterior pattern specification | biological_process |
GO:0001743 | optic placode formation | biological_process |
GO:0055001 | muscle cell development | biological_process |
GO:0007257 | activation of JUN kinase activity | biological_process |
GO:0046330 | positive regulation of JNK cascade | biological_process |
GO:0021881 | Wnt-activated signaling pathway involved in forebrain neuron fate commitment | biological_process |
GO:0008219 | cell death | biological_process |
GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
GO:0071407 | cellular response to organic cyclic compound | biological_process |
GO:0045599 | negative regulation of fat cell differentiation | biological_process |
GO:0009950 | dorsal/ventral axis specification | biological_process |
GO:0048320 | axial mesoderm formation | biological_process |
GO:0031101 | fin regeneration | biological_process |
GO:0007368 | determination of left/right symmetry | biological_process |
GO:0031122 | cytoplasmic microtubule organization | biological_process |
GO:0048048 | embryonic eye morphogenesis | biological_process |
GO:0060272 | embryonic skeletal joint morphogenesis | biological_process |
GO:0060823 | canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation | biological_process |
GO:0030910 | olfactory placode formation | biological_process |
GO:0005881 | cytoplasmic microtubule | cellular_component |
GO:0005886 | plasma membrane | cellular_component |
GO:0005938 | cell cortex | cellular_component |
GO:0030877 | beta-catenin destruction complex | cellular_component |
GO:0014069 | postsynaptic density | cellular_component |
GO:0005096 | GTPase activator activity | molecular_function |
GO:0070016 | armadillo repeat domain binding | molecular_function |
GO:0042803 | protein homodimerization activity | molecular_function |
GO:0004871 | obsolete signal transducer activity | molecular_function |
GO:0019901 | protein kinase binding | molecular_function |
GO:0008013 | beta-catenin binding | molecular_function |
id | description |
---|---|
K02157 | AXIN1; axin 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043235070.1 | False | 4290 | mRNA | 0.50 | 10 | 16957962 | 16986760 |
XM_043235071.1 | False | 4398 | mRNA | 0.50 | 11 | 16957962 | 16986758 |
XM_043235072.1 | False | 4554 | mRNA | 0.50 | 11 | 16957962 | 16998294 |
XM_043235073.1 | True | 4792 | mRNA | 0.50 | 11 | 16957962 | 16997612 |
XM_043235075.1 | False | 4349 | mRNA | 0.50 | 11 | 16957962 | 16998780 |
XM_043235076.1 | False | 4267 | mRNA | 0.50 | 10 | 16957962 | 16986751 |
XM_043235077.1 | False | 4287 | mRNA | 0.50 | 10 | 16957962 | 16986760 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
elfn1a | elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 | coding | downstream | 328806 | 16542348 ~ 16629156 (-) |
LOC122341848 | LOC101886504,LOC101886427 | coding | downstream | 506919 | 16449554 ~ 16451043 (-) |
nudt1 | nudt1,LOC107703398,LOC107592807,LOC107758325,LOC107674605 | coding | downstream | 585523 | 16368873 ~ 16372439 (-) |
ttyh3a | ttyh3a,LOC107581706,LOC107591862,LOC107703399 | coding | downstream | 600430 | 16308421 ~ 16357532 (-) |
grifin | grifin,LOC107758328,LOC107592780,LOC107592523 | coding | downstream | 712559 | 16243653 ~ 16245403 (-) |
pla2g10 | zgc:92162,LOC107727130,LOC107703381,LOC107745603,LOC107674667,LOC107564700,LOC107568924 | coding | upstream | 21644 | 17020424 ~ 17023995 (-) |
rmi2 | rmi2,LOC107674720,LOC107703341 | coding | upstream | 46320 | 17045100 ~ 17047481 (-) |
mslna | LOC107703339,LOC107727132 | coding | upstream | 50135 | 17048915 ~ 17060502 (-) |
LOC122341315 | NA | coding | upstream | 61362 | 17060142 ~ 17077420 (-) |
ubfd1 | ubfd1,LOC107564687,LOC107745602,LOC107674700,LOC107703338,LOC107727120 | coding | upstream | 84499 | 17083279 ~ 17089129 (-) |
G20781 | NA | non-coding | downstream | 11759 | 16945754 ~ 16946203 (-) |
LOC122341878 | NA | non-coding | downstream | 81881 | 16874664 ~ 16876081 (-) |
G20753 | NA | non-coding | downstream | 172754 | 16784990 ~ 16785208 (-) |
G20752 | NA | non-coding | downstream | 174137 | 16783204 ~ 16783825 (-) |
G20717 | NA | non-coding | downstream | 258540 | 16691165 ~ 16699422 (-) |
G20854 | NA | non-coding | upstream | 60711 | 17059491 ~ 17070363 (-) |
G20877 | NA | non-coding | upstream | 159616 | 17158396 ~ 17198716 (-) |
G20895 | NA | non-coding | upstream | 459226 | 17458006 ~ 17458330 (-) |
LOC122342167 | NA | non-coding | upstream | 501158 | 17499938 ~ 17501443 (-) |
G20933 | NA | non-coding | upstream | 570788 | 17569568 ~ 17570455 (-) |
uncx | uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 | other | downstream | 83975 | 16862725 ~ 16873987 (-) |
mafk | mafk,LOC107703391,LOC107674662 | other | downstream | 228273 | 16715721 ~ 16729689 (-) |
LOC122341847 | NA | other | downstream | 502483 | 16453074 ~ 16455479 (-) |
G20680 | LOC101886504,LOC101886427 | other | downstream | 506162 | 16451140 ~ 16451800 (-) |
atp5mf | atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 | other | downstream | 1357614 | 15598770 ~ 15600348 (-) |
snn | snn,LOC107564698,LOC107703342 | other | upstream | 40407 | 17039187 ~ 17042414 (-) |
h3f3a | h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 | other | upstream | 664725 | 17663505 ~ 17691250 (-) |
LOC122340174 | LOC107710648,LOC107674639,LOC107565762 | other | upstream | 707953 | 17706733 ~ 17718609 (-) |
G21010 | NA | other | upstream | 922168 | 17920948 ~ 17921707 (-) |
LOC122333861 | eci1,LOC107568619,LOC107690250,LOC107733832,LOC107590612,LOC107685938 | other | upstream | 1036730 | 18035510 ~ 18044587 (-) |