xpo6 (xpo6,LOC107715628,LOC107718574)


Basic Information

Item Value
gene id xpo6
gene name xpo6,LOC107715628,LOC107718574
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4963561 ~ 4983738 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235088.1
CACTTCCGTTAGTTTAATGGGCAGAGGAGAGGAAGCTGCGAGAGGCCTGCACGCAAACAGCGATCCCACCAACCCAAGGAGTGGCTCTGTCAGTCTTCCGAGGGCTCAAAATAAAGCACCGAGCCCCGCACAGGGCTCCCGCCGCGCGAGACGTAAACAACAGAGTCGCGACATTTTTTTTAACGCCGCTGTTGCGTTGCTCTTCTCTCCGTTTCGCAGTAGTTTTGTGCGGTTTGCCGCCGCGTATCCGGCCAGCGTCGGCTCCAGCCTCTGTCCCTTTAGGCTCTCGCTAGATCGACAGTAATAACAAGTGTTCCGGAGCCAGTGACCGGGGTCCGCCGGTTGCGTGCGGGACAGCGATGCGGAATTTCGGTGCTTCCAGATGAAACGCAGAGGCCCCAGAGGAAGCATGAGCGAGCAGAACCAGATTCATCTCATAGTATAGCCGCATAAAAGCTCAGAGGCCTGGCATGGCGTCAGAGGAGGCCTCCTTACGGGCCCTGGAGAGTCTTATGACAGAGTTTTTCCACAGCTGCACCACCAATGACCGCAAGAGAGAGATTGaAGAGCTGCTGAACAGTTTTGCGGGTCAGCCCGGCTCGTGGAGGCACTGCCTCTACTTCCTCTCCAACAGCAGAAATGAATACGTCATGATGTACAGCCTTACTGTGTTTGAGAATCTTGTGAACAAGATGTGGGTCGGTGTAGCCAGTGAGGACAAAGCAGAGCTCCGTAGCTGTTTGCCCAAGCTTCTgctttcccagcatgctctgcTGCCTTTCTTCATCAGAAACAAGCTGTGCAAAGTCATCGTGGACATCGGACGCCAGGACTGGCCGATGTTCTACCATGACTTCTTCAGCAACACCTTACAGTTGGTGCAGTCACCGTCTCTCGCGCCGCTGGGGTTAGTTCTGCTCAAGATGACCTCAGAAGAGCTGGTCTGTCCGAGAGAAGACTTGAGCGTTTCTCGTAAAGAGGAGCTGAAGAAACTCCTGCTGGATCAGATCCCCACCGTGCTGAACCTTCTGACTGGTATTTTGGAGACGGTATGGGACAAACACAGTGTTACGGTCACCACTCCCCCTCCGTCCCCTACGTCTAGAGAGTCAGGCATTCTTTCAGGCGACAGCACACCGATGGTTCTGGAAGCTGAAAGTGCCGCTCTGTGTCTGCTAGCGTTGGAATGCTTGGCTCATCTCTTCAGCTGGATCCCTCTCTCCTCTTCCATCACTCCATCCCTCCTCGCTTCGATTTTCCACTTCGCCCGCTTCGGATGCCAGCAGCCAATCAAAACGAAACCTCTGCCCACTTCCAACGGAGACTCCGCCCCCGGAAGCCTCCCGGCCAATGGCGGCGGCGGCGGGGGCCACGGCAGGACTGGTCAGATGGTGGGCCACGCCGAGCGCGCCAGGCTGGGCGTCATGGCCATGAACTGTATTAACGAGTTAATGTGCAAAAACTGCGTCCCGGTGGACTTCGAGGAGTTTCTGCTCCGCATGTTTCAACAGACTTTCTACCTGCTGCAAAGACTCACAAACACGCACTCGCACACCAACACGCACACTATCAAAAGCAGGTTGCAGGAATTAGACGAAAGCTATGTGGAAAAGTTCACAGATTTCCTCAGGCTGTTTGTTAGTGTTCATCTGCGGAGGATCGAATCTAACGCCCAGTTTCCTCTAGTGGAATTTCTAGCTTTGCTCTTCAAATACACCTTTAACCAGCCGAATCATGAGGGTTATCTGGCCTGTCTGGATATCTGGAGCATATTCCTGGACTACCTGACCACCAAGATCAGAAGCCGATTGGCTGACAGCGACAGTGTCATTAACAGGTATAAAGACGCTCTAGTTCTGCTGCTTCGTGAAGTTCTTAACAGGATCCAGTTCAGGTTAAACCAGAGTCAGCTAGAAGAACTCGACGACGAGACCCTTGACGATGATCAACAGACGGAATGGCAGCGATACCTGCGTCAGAGTTTGGAAGTGGTTGCCAGGGTAATGGAGCTGCTGCCATCCCAGACCTTTTCAGTTCTGtttccTGTGCTGCAGGAGGATCTGGACATTTATCTTGGGCTGCAGCAGTTTATCGTGAGATCAGGAACAAGTCGCAGGCTGAACATTACAGCGGAGGCCGACTGCAGAAAGCTGCACTGCGCTCTCAGAGACCTGAGCTCTCTTCTGCAGGCCGTGGGACGTCTGGCCGAGTTCTTCACAGGGGACGTTTTCACCGCTCGCTCTAACGACGCCCTCGCCATCGTACGGAGATTAGTGGAAGTGTCTTGTTACGGTTCTCAGATCAGCCTGTATGATGTAGAAATGGCTGTACCTTCAGTGCTCAAACCGGACCTTATAGACGTCCATGCGCAGTCATTGGCTGCTCTGCAGGCGTACTCTCATTGGCTGGCACAGTTTTGCGGCGAGGTGCAGCGACAACAGGATCAAACGCAATTTGTGGACCTCATCACGTCGAGCATGGCCGCCACGACCCCTCTCATCAATGCCAAGGTTCCAGAGAAACTCCTCTTATCTGCGTGTCATCTCCTGGTCTCCATGGCGACCACCGTGCGGCCGGTGTTCCTGGTGTCGCTGCCGGCGGTGCAGAACATCTTCAACCTGATCACAGAGAATCATAACCACAGATTACCTCAGGAGGCTCACGTCCTCGTGTGTCGAGCTCTGTCAAACATGTTGCTGCTGCCGTGGCCCAGTCTGCCGGAGGCGGAGCAGCAGTGGCAGAGCCGCTCAGCCAATCATGCGCGGCTTCTCAGCAGTCTCACGCAGCAGTACCGCCTCCTGCCCCGCCCACCCAGCCATCACCCCAACAGTAAAGCGGTCATCCAgcagactctgtgtgtgttgaGGGATCTGGTGGACAGTATATCAGGAGAGGCCACCAAATCACGTCAGATCTGTTACCACAGTCTGCAGGAGTCTGTCCAGGTCACGCTCGCGCTCTTCCCTCTCTTCATCCAGCAGCCAGATGTGACGGATGAGATGCTGAGTTTCTTCCTCACGCTGTTTCAAGCGCTGCGTGTGCAGATGGGTGTGGCCTTCACGGAGCAGATCATCCAGACCTTCCTCAGCATGTTCACCAGGGAGCAGCTGGCGGTGAGCATCTTACAGGAGGGCAGCTCTGGCTCCAAAGTGGTTCAGAAGTTTCTCAAGATTCTGCAGGTGGTGGTTCAAGAACCTGGTCAGACTTTCAAACCTCTGTTACCCAGCATCCTCAGCCTTTGTTTGGATCAGGTTTACCCAATAGTGGCAGAGCGCTCCTGTCCAGATGTGAAAGCAGAGATGTTCGAGCTGCTCTTCCAGATTCTCCATCAGAACTGGAGGTTCTTCTTCAAGAGCTCAGTGTTGAGCAGCATTCAGAGAACCGGAGCCGAAGAGCTGATGGAGAACCAAGCGCAGTTCATTGCTGCCATGCAGGCCTTCGGTCAGTCTTTTCTGCAACCAGACATTCACATCTTCAAGCAAAATTTGAGTTACCTCGAGGTCCTGAACACCAAACACAAGCTGTACCACAGgAAGCTGTTCCGGAACGCCATGCTGTTCCACTTCATAAATGTTCTCCTTCAAGTTCTCCTGCACAAGAGCCACGACCTTCTCCAGGACGACATCACGCTGGCGCTCTACAACATGGCGGCTGTGGATTTCTCAGCGTTTTACTCTTCCTTCTTGCCAGAGTTCCTCAATGGCTGCCAAGGCCTCGACCCTCACCAACGCACAACGCTTGCCCGAAACTTCACGCCAGAGAGGGACCTGCCGTCGTTTTCTCAAGGAGTGTATCGTATCGTGAACGACCTGCGCTTCTACAGACTGTGCAATGGAAGCCTTCCTCCGGGAACCTTGAAGCTATAGCAGCGCTCAGCCAAACCGCGGCCCATCCCTCTCCGGGACGCCGACCGCTGCTTCGGCGCTCATGCCTTTCGCCCGAGACCTCGGCGGTGGTGGTGGCGGCGCGATCCGAGAGCAGCTTCTTCTATGTTTATCTCAGC

Function

symbol description
xpo6 Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in cytoplasm and nucleus. Orthologous to human XPO6 (exportin 6).

NR:

description
exportin-6 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K25204 XPO6, RANBP20; exportin-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235088.1 True 4003 mRNA 0.54 25 4963561 4983738

Neighbor

gene id symbol gene type direction distance location
antkmt fam173a,LOC107553674 coding upstream 1581 4958012 ~ 4961980 (+)
si:dkey-282h22.5 NA coding upstream 5702 4952501 ~ 4957859 (+)
LOC122341982 zgc:112320,pde6g,LOC107718621,LOC107660259,LOC107661785,LOC107553649 coding upstream 26821 4908351 ~ 4936740 (+)
LOC122341832 NA coding upstream 68954 4892115 ~ 4894607 (+)
LOC122341768 coa1,LOC107600219,LOC108428892 coding upstream 133080 4827437 ~ 4830481 (+)
nme4 nme4,LOC107715653,LOC107695718,LOC107718576,LOC107661657,LOC107553633 coding downstream 3702 4987440 ~ 4991394 (+)
gadd45gip1 LOC107553677,LOC107661658,LOC107735399,LOC107715629,LOC107550245 coding downstream 255835 5239573 ~ 5241326 (+)
swsap1 LOC107550247 coding downstream 296441 5280179 ~ 5282321 (+)
LOC122341561 LOC107711124,LOC107659564,LOC107550256,LOC107718588,LOC107656793,LOC107579440 coding downstream 425861 5409599 ~ 5413133 (+)
LOC122331179 LOC107550260,LOC107659569 coding downstream 567458 5551196 ~ 5556139 (+)
LOC122341984 NA non-coding upstream 49068 4912694 ~ 4914493 (+)
LOC122333539 NA non-coding upstream 60282 4898839 ~ 4903279 (+)
G17018 LOC107715650,LOC107550229 non-coding upstream 96243 4865208 ~ 4867318 (+)
G17003 NA non-coding upstream 169527 4792546 ~ 4794034 (+)
LOC122341099 NA non-coding upstream 314390 4647091 ~ 4649171 (+)
G17026 NA non-coding downstream 8258 4991996 ~ 5035379 (+)
LOC122341773 NA non-coding downstream 223506 5207244 ~ 5211693 (+)
G17059 NA non-coding downstream 224918 5208656 ~ 5208867 (+)
G17061 NA non-coding downstream 235912 5219650 ~ 5220372 (+)
G17056 NA non-coding downstream 270762 5254500 ~ 5257752 (+)
G16981 NA other upstream 56595 4905656 ~ 4906966 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 416994 4470732 ~ 4546567 (+)
G16979 NA other upstream 501287 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 525360 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 558177 4357032 ~ 4405384 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 326755 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 432020 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 573270 5557008 ~ 5565974 (+)
G17302 NA other downstream 613361 5597099 ~ 5598232 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 973665 5957403 ~ 5962888 (+)

Expression


Co-expression Network