coil (LOC107601265,LOC107654481,LOC107721510,LOC107688104,LOC107719984,LOC107590393,LOC107716599)


Basic Information

Item Value
gene id coil
gene name LOC107601265,LOC107654481,LOC107721510,LOC107688104,LOC107719984,LOC107590393,LOC107716599
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13978194 ~ 13982211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235135.1
TTCCACACCAACAGAGAGCAGCAGAGTGTTTGACAAGCCCTGTTTAAAACAGTGAGCGCCTCCATCATCCTCGTTGACGATACACGGCTCAGGCATGGCCACCTCCAGCCTCAATTCTGTCAGGGTTAGATTGTACTTCGACTATCCTCCTCCCGCGACACCTGAGTGTCGGATGTGTTGGTTGCTGGTGGACTTAAACAAATGCCGAGTTGTCGCAGATCTTTCCAGCATCATAAAGGAAAAGTTTGGCTACAGCCGCAGGACTGTTTTAGACTTGTTCATTGAGGACTGCTACCTGCCTTCCACAGAAAGTATTTATATAGTACGTGATAATGATAGCGTAAGGGTGAAGGCTTCCAGTGCTGTTTATATTAATGGAGCAGAGGTTTGCCAAAACTCTGACGCGCAAAACCCAAAGACCAAGAAAAGAGGGAGAGATGATGAGACGCAGATCTGTGAAGgtctaagtaaaaaaaagaaacccgAAGATGTGCAGATCAATGGCTCGGCACCAGCTGAGGAggccaagaagaagaagaaaaagaaaaagaaagagtctGCCACCCCTCAAAAAACCATTGAAACCCCATCTCctactaaaaacaaaagaaaaagcatttctgCTGTCCCTACCAGTGACAAAACAACTCGTGCAAAGATTCGCCAACCGATGTCAAGTTCTTCAGACAGCAGTGAGGATGAGTCTCACGTTAAGGCTCTTCCACTGAAACCCAAACAGAATGGCGCCGCCAAAAAGCCACAGAGAGTAAGATCACCTCCGGATGACACAGCGAAACCCAACAGCAGCGCTCCTGTACAGCCGCTTCTGGTTACACCTAAACTGTCTAGCAAAACCTCAAAACTTCCACTGCAGACCCCAACACGCAGAGAGAGCTCCACAGATtcgtcttcctcttcctcttcgtCATCGCTCAGCCAAGCCAGAACTACAGCTAAGAAATCGCAAGAAGCAGCTCAGCCCTCCTCAGCTAAAGTTCAGGCTGTCTCGTCTTCTGTGTCCAAAAAGCCCGGGGATAACACCGGGAGCTCAGACTCTGAGGACAGTGAGATAGAGCTTGTGATTAAGAAACCTAACCTGCACGGGATGGGATTGAAAATCGCTGGTTTGAGCCCCGGTGTTAGTGAAGCAACCGGCAGGGACCGAGGAAACACGAGAGGTCAGGAGAGAGGCAGAGGCCGGGGGGCCAACCGAGGCAGTGGCAGGGGAGGTTTTGGTAGGGCCAAGGGAACACCGTGGAAACAAGACTTTCACTACAACTATGACAATGGTGAACGGCAGAAACAGAACGATTCTCTGACTAATGAAAGTTTTATTCTGCAGAATCCACCTGAAATAGCTCCCAGACGGGACTATGCAGCTTTACCCTTGCTGGCAGCTCCCCCGGCAGTGGGCCAAAAAATGGCCTTTAAGCTTTTGGAGCTGACTGAGAACTACACACCGGAGGTGTCTGATTATAAAGAAGGGAAGATTATTGCATTCAATCCTCAAACAAAAGTGATGGAGCTTGAACTTCTTTCTCAACCTCAAGCTCCAGCTGAACCTGGCAAGTTTGACCTGGTATATGAGAACCCTGATGGATCTGAGAGAGTAGAGTATGCTGTCACACATGGATCACAGCTGACTGAGCGTTGGGATTCTCTTTTGGAGCCCCGGCTCATTGTGGAGAATGTTGGATGATGGTCATACAAAACATGTCATCTGAGCCAGACCTTCATggacaacctttttttttttttttttttttaacgctgtTTGTTGAAACAGCCGATTTCCATATCgtattaacttttaattttattctcaatgtcagtcaaataaatatagtttgttttttttatttgggagTAGAGgtgattgatttattattagagtGTGTTCGTACAGCGAGTGCAAATAGCCAACAGTGTTGGCCTAGGCTGTTTTTACTTGCTATAGAGAGAGAGGTTTAGGTTTTAGTATGATTCGCATAATTCCTTTTTAATCATTGTGTGAGTTTCAACTTTCACAATTTGCATTTAGTGTAAACTAGTTTCTACTTGTTGCTTTTGAGAAGGACATTTTAGTGTTAATTCAATAG

Function

NR:

description
PREDICTED: coilin isoform X2

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0030576 Cajal body organization biological_process

KEGG:

id description
K13150 COIL, CLN80; coilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235135.1 True 2099 mRNA 0.46 7 13978194 13982211

Neighbor

gene id symbol gene type direction distance location
rab11fip4a rab11fip4a,rab11fip4,LOC107601264,LOC107654480,LOC107719982,LOC107688103,LOC105899936,LOC108436969,LOC107721471 coding downstream 1310 13938088 ~ 13976884 (-)
suz12a LOC107721513,LOC107601261,LOC107688101,LOC107654477,LOC107719980,LOC107590398 coding downstream 65741 13902654 ~ 13912453 (-)
caskin1 caskin1,LOC107721515,LOC107654476 coding downstream 93413 13808307 ~ 13884781 (-)
dctn5 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding downstream 205804 13770651 ~ 13772390 (-)
ndufab1b ndufab1,LOC107601258,LOC107654464,LOC107721527,LOC107580109,LOC107720092,LOC107688150,LOC102794063,LOC107725395 coding downstream 211126 13765232 ~ 13767068 (-)
engase engase,LOC107654484,LOC107601267,LOC107719983,LOC107590436 coding upstream 4865 13987076 ~ 13994375 (-)
csnk1da csnk1d,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC103024472,LOC108259482,LOC104935249 coding upstream 21128 14003339 ~ 14026070 (-)
gps1 gps1,LOC107654488,LOC107721507,LOC107688111 coding upstream 54109 14036320 ~ 14043502 (-)
rac3a rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding upstream 62097 14044308 ~ 14048699 (-)
prkar1aa prkar1aa,prkar1a,LOC107654492,LOC107721504,LOC107590390,LOC106606198,LOC108274040 coding upstream 67271 14049482 ~ 14056722 (-)
LOC122342150 NA non-coding downstream 47917 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 79262 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 344409 13633559 ~ 13633785 (-)
G19811 NA non-coding downstream 620405 13357579 ~ 13357789 (-)
G19726 NA non-coding downstream 848586 13125521 ~ 13129608 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding upstream 77370 14059581 ~ 14060492 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 237874 14220085 ~ 14221797 (-)
G20202 NA non-coding upstream 403150 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 451494 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 467264 14449475 ~ 14451028 (-)
G19933 NA other downstream 172216 13805368 ~ 13805978 (-)
gng13b NA other downstream 185592 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 910004 13005996 ~ 13068190 (-)
G19700 NA other downstream 930700 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 1215104 12681990 ~ 12763090 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 220719 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 452936 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1138595 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 1159606 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1616559 15598770 ~ 15600348 (-)

Expression


Co-expression Network