scpep1 (scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106)


Basic Information

Item Value
gene id scpep1
gene name scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13982254 ~ 13986772 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235136.1
TGAAGTCATATGATACCGAGCCTCACATCACGGTGTCCAGAGGACTGTATTTGAGTACTTATAGCCGGTGGTGGGTCCAAACACAGCCCATGTGGCAGGCTGCTTGAGAGAGAGCTTGAGGTCGATAATAATGGCGCGCTCGTGGACTGGCATGCTAGCTGTGCTGCTATTTGCTGCGAGCTTTTATGTAGGTAGTTGTGTTCCTGTTCAAGCCAAAGAGTCGTGGGGATATGTGGATGTCCGTGATGGAGCTCATATGTTCTGGTGGCTGTACTACGCCAACAGCTCCAGCGCCAGTTATAAAGATCTACCTCTGGTTATGTGGCTGCAGGGAGGCCCTGGTGGATCTAGCTGTGGTTTTGGCAATTTTGAGGAAATTGGACCCCTTGACAGAGACCTTAAGCCTAGAGAAACCTCTTGgGTGCGTGCTGCCAGTGTGCTATTTGTGGATAACCCAGTGGGCACCGGATACAGTTACACAGACACTGAAGATGCCCTCACCAAGGACGTTTCAATGGTGGCATCCGACATGATGGTCCTTCTCAAGAGCTTTTTCTCTCTAAAGACAGAGTTTCAaAGTACTCCCTTCTATATATTTTCGGAGTCTTATGGTGGCAAAATGGCAGCAGCTATTTCCTTCGAACTCACAAAGGCAGTTCAAGCTGGTACAATCAAATGCAACTTTGCTGGGGTGGCTTTGGGAGACTCCTGGATCTCTCCTATAGaTTCAGTCATCACATGGGGTCCTTATCTTTACAGCACATCTCTGTTGGATGACAATGGGCTGGGCGAGGTGACTAAAGCAGCAAAGGCAGTGCTGGAAGCAGTGAGACAGGGCCAGTACCAAAGAGCCACAGACTTGTGGTCCATCACAGAGAATGTAGTGGAACAGAACACAAATGGTGTGAACTTCTATAACATCCTCGCACAAAACTCAGACGAGATGGTGAAGACCGGTTCGGATCAAAACAATGGATTTCTCTCCTCGCTGAAACGTCGCCACATTCAACCTTTGCACCGTCAGTCCCTTTCAGAGTTAATGAATGGTCCAATCAGGCAGAAGCTTGGTGTCATACCAAAGAATGTCACATGGGGAGGACAAGCTGGGGCAGTGTTTGGAAGCATGGCAGGAGATTTCATGAAGCCTGTGGTGGACATTGTAGATCAGCTTTTGGCTGCAGGGGTCAATGTTACCGTCTATAATGGCCAGCTGGATCTCATTGTGGACACAATGGGTCAGGAGTTGTGGGTGAAACAGCTGAAATGGGACGGACTCCAATACTTCAGCAAAATGAAATGGACAGCACTGGAGGACCCACAAACAGAGAGCCAGACTGGAGCTTTCTACAAGACCTACAAGAACTTTGCCTTCTACTGGATCCTCAAAGCTGGACATATGATCCCGTCTGACCAGGGGCCAATGGCTCTGCGGATGTTGAAGATGGTGACTCAGCAGGAGTGATGGATACAAACTGGAATTGCTTGCTAAACACTTTTAGACAATCAACACTCAAATTTTACCAAAACATGACAATTTTCTTTGagatcttcatttttttttttttttcaatgcctGTGTCTTGTAACATTTGTAAATCTGAATGCCTGCAAACAATAAAGTCataattttttatacagtttgaA

Function

symbol description
scpep1 Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in several structures, including digestive system; immature eye; nervous system; optic primordium; and yolk syncytial layer. Orthologous to human SCPEP1 (serine carboxypeptidase 1).

NR:

description
PREDICTED: retinoid-inducible serine carboxypeptidase-like, partial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004185 serine-type carboxypeptidase activity molecular_function

KEGG:

id description
K09646 SCPEP1; serine carboxypeptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235136.1 True 1644 mRNA 0.47 13 13982254 13986772

Neighbor

gene id symbol gene type direction distance location
trnat-cgu NA coding upstream 68560 13913623 ~ 13913694 (+)
crlf3 crlf3,LOC107688102,LOC107654479,LOC107721514,LOC107719981 coding upstream 79665 13888940 ~ 13902589 (+)
traf7 traf7,LOC107601260,LOC107719978,LOC107590399,LOC107654453,LOC107721517 coding upstream 174072 13796853 ~ 13808182 (+)
rpusd1 rpusd1,LOC107720093,LOC107654465,LOC107590456,LOC107688151 coding upstream 212309 13767191 ~ 13769945 (+)
LOC122339456 LOC107590441,LOC107721518,LOC107654452,LOC107719974,LOC107688138,LOC107601257 coding upstream 217882 13718936 ~ 13764372 (+)
dus1l dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391 coding downstream 42733 14029505 ~ 14036025 (+)
zgc:86896 zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990 coding downstream 70872 14057644 ~ 14062454 (+)
wipi1 wipi1,LOC107721503,LOC107654490,LOC107688112,LOC107590389,LOC107719990 coding downstream 76501 14063273 ~ 14073404 (+)
slc16a6b slc16a6b,LOC107721502,LOC107719991,LOC107688113,LOC107654485,LOC107590388 coding downstream 89430 14076202 ~ 14084506 (+)
rgs9a rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993 coding downstream 115243 14102015 ~ 14111321 (+)
G19963 NA non-coding upstream 38763 13940616 ~ 13943491 (+)
LOC122342149 NA non-coding upstream 61985 13913926 ~ 13920269 (+)
G19891 NA non-coding upstream 164032 13815353 ~ 13818222 (+)
G19890 NA non-coding upstream 189699 13787833 ~ 13792555 (+)
G19788 nsfa,LOC107689618,LOC107709994,LOC107601245 non-coding upstream 538676 13409739 ~ 13443578 (+)
G20009 NA non-coding downstream 113401 14100173 ~ 14101904 (+)
G20057 NA non-coding downstream 161692 14148464 ~ 14150958 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding downstream 316378 14303150 ~ 14304893 (+)
G20146 NA non-coding downstream 392852 14379624 ~ 14457906 (+)
G20166 NA non-coding downstream 630490 14617262 ~ 14618834 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 271389 13698537 ~ 13710865 (+)
si:dkey-204f11.64 LOC105898698 other upstream 867398 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 994341 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 1453451 12519837 ~ 12528803 (+)
G19326 NA other upstream 1468533 12511926 ~ 12513721 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 9189 13995961 ~ 14002378 (+)
G19973 NA other downstream 62718 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 131695 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 133413 14120185 ~ 14123128 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 268718 14255490 ~ 14273309 (+)

Expression


Co-expression Network