ppfia3 (ppfia3,LOC107551161,LOC107563979,LOC107732887,LOC107729434)


Basic Information

Item Value
gene id ppfia3
gene name ppfia3,LOC107551161,LOC107563979,LOC107732887,LOC107729434
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10885698 ~ 10920560 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235138.1
agagagagagagagagagactggggTTGTCTGTGGATAGGTGTAACGTTTGCTCGCTCGGTGCCGTCGTTACATGTGTGAGGAAGAGGGAAGGGGGGAGGCTGATAACTGGGCACCCAAAAGCGCTGCTCTCCGATGGGGTCGACGGGGatgaaatgatgatgatgatgatgtctaCCGTTTACTCTCGACGATGACAACGCTCTCCTTTACTTGACGTTCGAACCCATTGGGTAGAAGACTTTCCTCCATGCCCACCCTTCCTTTTACCCAATCCAGTCCCTGCGACCCGGCGACTTTCCCCTCCTACTTTCTCCTGCCACTTTTGTCCCACCTGAGACCACGTCCTGCTGCTCCACCCAAATGCACCCAAGCCAAGGATATTGAACAGCACATTCTAAGAGCCAATCAGGAGCCTTGAAGCCATTCAGGAAATAGCAACACAACTCACGAATCTACCTGAgcactgaggaaaaaaataaaggcaagGAAGCTGTGGATAATAAACTCATTGTCAAGGAGACAACTCAGATAAACTGGCAGTACGTGTCCACCTTTGAAGAAGAGCACAGCAATTAGGAGTTTCCACAAAGAAATTGAGGGTGAATTCAAAAACTGAGGGACAAGATTTAggtgaaaagaaagagagaacaaGTGCACGCATAATATAACATATCTGCAATACTCACATTCCCACACACATTACAGACTGTTAAGGCACACGTTCTTCACCCTAGAAACCCGCATATGAATGACAAGTTGTTTATCTCCTTGCCGTAGGCTCTCAGGCACGCAAACGCCGTCGGATTCGCAGTCCCACACTGTGATTCCTTGCAAACTTGTAGGGCcgagacacatacacacactcacccttAAACACTCGCACCTGTTCACGGCCTCAAGATGATGTGTGAGGTGATGCCCACCATCTCGGAGGACGGGCGGGGTGGTGGTGGAGGAGGCCCGTCCTCTCCTGCCGGAGGTGGTGGGGGTATGGGCGGCGCAGGGGGCATGGGTGGTGGCTATGGGGGCCGGGAGGCCCGCGGCGGGGACGAGGGCGGGAGCACTGGAAATCTGGAGTCTCTGATGGTGAACATGCTGACGGAGAGAGAGCGGCTGCTGGAGAGTCTCAGAGAGACCCAGGAGAGTCTCGGCACAGCACAGCTACGTCTGCGAGAGCTGGGTCACGAGAAGGACTCGCTACAGAGACAACTCTCCATCGCGCTGCCTCAGgagTTTGCGGTGTTGACCAAAGAGCTGAATGTATGTCGGGAGCAGCTGCtggagagagaagaggagattGCTGAGCTCAAGGCGGAGAGGAACAATACACGGCTGCTGCTGGAGCATCTGGAGTGTCTGGTGTCTCGTCACGAGCGCTCTCTGAGGATGACTGTGGTGAAGAGGCAGGCCCAGTCACCTGCTGGAGTCTCCAGCGAGGTGGAGGTGCTCAAGGCCCTCAAGTCTCTGTTCGAACACCATAAAGCCCTGGACGAAAAGGTGCGTGAGAGATTGCGTGTGGCTTTAGAGCGAGTTGCTGTTCTAGAGGAAGAGCTGGAAGCGTCCACAAATGAGGTTCTGTCTTTACGGGATCAGATTAAAAGGAGAGAGCGGGGTTTGGACAATGGAAAGGAGCGGCTCCCGAATGGCCCTTCCTCCATCTTGGATGATGGCGAGattgacagacagagagagggagagatagagagacagagagcagagCTTTCACAGTTAAAAGAAAGACTGGCACTCATGTGCAGACAGGTTGGAGAGATCGAGGAGCAGCTCACTACCGCCAGGAGGGAATTAGCTAAATCTGAGGAAGCCAATCAGAAGCTTCAGAGGGACGTGAAAGAGGCGCTATGTCAAAGAGAGGACATGGAGGAAAGAATCACCACCTTAGAGCGCAGgTACCTCAGTGCCCAGAGGGAGGCAACCTCTCTCCATGACATCAAAGACAAGCTGGAGAACGAGCTTGCCAGCAAAGAGTCTTTATACAGACagAGTGAAGAGAAGAACAGGCAGCTCCAGGAGCGTCTAGACGATGCTAAACAGAAGCTGCAGCAAACCCTCCAGAGGGCCGAGACGCTGCCCGAGATCGAGGCTCAGCTCGCCCAGAGGGTGGCGGCGCTCAACAAGGCGGAGGAGCGTCATGGCAACTTTGAGGAGAGACTGAGACAGTTGGAGGCACAACTTGAAGAGAAAAATCAGGAGCTACAGAGGGCGAGGCAGAGGGAGCGGATGAATGACGAACACAACAAGCGTCTCTCAGACACGGTGGACAAGCTTCTGTCAGAGTCCAATGAGAGACTGCAGCTGCACCTGAAGGAGAGAATGGCTGCCCTGGAGGAGAAGAATGCTCTCTCTGAGGAACTCGCTAACATGAAGAAGATCCAAGATGATCTCTTAGCGAACAAGGATCAACTGATTGCAGAGCTGGAGAGGCTTCAACTAGAGCTAGACCAGCTGAGAGGAAGACCGGGTTCCTCTTACTCACGGTCTCTGCCAGGAAGCGCTCTGGAGCTGAGGTACTCCCAGGGAGGAGGGTCACTTCCTGCTGGCTCCACCACTCACCTAGACCATTATGGAAACACAGGCACTGGAGGCGTGGTTAGACGGGCTCATCGTGGCCGCTGGGGCGGGGCAAGGGAGGACCCTAGCAAATATGGCGACTGGGACGGACCTTTGCTGGGTACTGGGTTCGAGGGCGGCGTGGAGGACAGGTGTTCTGATGATGAAGAGGATCGCGAGACACTCTTCGGATCAGAGTTGCTCTCACCAAGTGGCCAGACAGATGTGCAGACTCTCGCTATCATGCTGCAGGAGCAGCTGGAGGCCATCAACAAAGAGATTAAgCTGATTCAGGAAGAGAAGGAGAGCACAGAGCTTCGTGCTGAAGAAATCGAGAGCAGAGTCAGCAGCGTGGCTCTGGACGGCCCTCCAGTCCCCCCGACCTCTCTGGGACGGGACAGCACAGGCCGTGGcttcatccctccatccctcaCATCCTCCACCCTGGCATCACCCTCTCCACCCAGCTCCGGGCACTCCACCCCCCGCCTGCCCCACTCCCCAGCTcgcgagacagacagacagAACAACAAAGATGACGACAGGTCCCTGGCCCTTCTGGACTCCACCCCTCCTCCTACACCTCGCGCGCTGCGACTGGACAGGATGACGCACACTCACCCCGGTGCAATGTTGGATGACAGTCGCGAGTTCCGCAGCCTCTCTGCTGATGGCAGCAGCTCAAACAGCAGCCAGGACTCCCTCCACAAGGCcagcaaaaagaaaagcatCAAGTCTTCCATCGGTCGGCTCTTTGGGAAGAAGGATAAGGTCCGGATGGGTCAGCCTGGACGCGAGTCAGCATCTCTTGCCTCGACCCCTTCAGATGACCTGGGCTCTGTGGATCCCCTCGGACTCACTAAGATGGCCGGTCCGGTGGACAAGGATCGTCGCAGcaagaaaaaGCATGAGCTGCTGGAGGAGGCATGCCGACAGGGCCTACCCTTTGCATCTTGGGATGGACCCACTGTTGTTTCCTGGCTGGAGctgtGGGTGGGCATGCCGGCATGGTACGTGGCAGCCTGTCGTGCTAACGTGAAGAGTGGAGCCATCATGGCTAACCTGTCAGACACAGAGATCCAGAGAGAGATCGGCATCAGTAACCCTCTGCACCGCCTCAAACTGAGACTGGCCATTCAAGAGATGGTGTCCCTGACCAGCCCCTCGGCCCCTGCCAGCACACGCTCCTCGACCAGTAACGTGTGGATGACCCACGCTGAGATGGAGTCCCTGACCGCAGCCACCAAACCAGAGCTGAAAGAGATTAGCTGGGATCAGATCCTGGCTTATGGAGATATGAACCATGAGTGGGTGGGCAATGATTGGTTGCCCAGTCTGGGTTTGCCCCAGTACAGAAGTTACTTCATGGAGTCTCTGGTGGACGCCCGCATGTTGGACCATCTGACCAAGAAAGAGCTGCGAGGACAGCTAAAAATGGTGGACAGTTTCCACAGGGTGAGCCTGCATTATGGAATCATGTGCCTGAAGCGCCTCAATTATGACCGCAAGGAgctggagaggaggagagatgaGAGCCAGCACCAGAataaagATGTGATGGTGTGGTCAAACGAGCGAGTGATGTGCTGGGTGCAGTCCATCGGTTTGAAGGAGTATGCGGATAACCTGACCGAGAGCGGGGTGCATGGTGCCCTGCTCGCCCTGGACGACACCTTCGATTACACCGACCTCGCCCTGCTCCTTCAGATACCCAATCAGAACACACAGGCACGACAACTTCTGGAGAAGGAATACAACTCTCTCATCGCCATGGGAACAGAGAGGAGGCCAGACGAGGATGGCACTAAGACGTTCACCCGCTCCCCTTCATGGAGGAAGATGTTCCGGGAGAAAGATCTGAGGGGCGTGACCTCTGACTCCTCAGAGACCTTGCCTGCTAACTTCCGTGCCTCAGCCATCTCTACCCCCTCAGTCACCCTGAGGAAGGTCCAGAGCGATGCATCTCCAAGGGCAGAGTCTGGCTCAGTGAGGACCTACTCCTGTTGAGGGACTGCAAAGGAGGCGCCGTTGTCAGAGAGCTGGAACCGGCTTTACATTTCATTCACGGGGAGGAGGGGGGATAAGCAGAAAAAAGCaatgaatatatacatttataaatataactcTACTGGTCTGACCATTCTGCAATAACAGAAGAgggatggagaaagagaaaaaaaaagagcaaactaaaaaaaggacaaaagacATGAAGAATGTACGACACGGGAGAGTGGTAAGAGATGGGATGGTTGGAGGAATCGGATGACtgtttaatttttctttctgtcGTTCTCTCTTCTCACTTCCTGTGTCTGTGCTGATGGGACATCTGTAGATGAACTCTCTCGTCTTTCCATCCTTCGTTTCAATGGCGCTGCCCGCAGCCCTAAGTTCCTCAGAATGGCTTTCGTTGACCGTCTGCAATTTGGTCTCTCGAGTCTCTCGATAGCAAAGGATGTTTGTGGCAACTCAACCTGGACTTCAGGGATGTTTACATACGGTAAGGTTCAGAGGAAGTGTACTTAAGAGCACAGTCGACGGGCCAGGCTGTGTGAGGCCAAGACTTCGCTGTACGTGTTTCTCAATCAGCACAAGCTGAGAAAGACCGCAGCGAGATCTACCCCGCGAGGCTGCCAGGGGCACATTTCTTGCTCAATTACTactaggtgttttttttttccaatcttcAAACATTTAGATTAAAAGGCTAAAGgtcagcagagagagagagtcagcaAATGAAGGGAAGCTGGTGGtggcagatagatagatgcttGCGGACAAAGGCAAGTGACCAGCAGACATGAGTCCTGATGGACAGAATCATTCTAACAACGCAAGCCATAAAAAAGACGACAAGAGGTGAaccgaggaggaggagaggaggagaaacgGGGGGACGGGGTGGGAGAAAACGTTTAGCTTCTGTGTTGCGATGCATGTCAAACAACCAAGACGACAACGAACTAAAACCTTCGGGGAATAAGACAATatgaagttaaaaataaaaaattatgtgtaCATTAACATATGAGGTTAAGAGCTTGGGGAAcaatttgtaaaatgtgtgtattttcatttttattttttatttttatgataactatatttattttctttatgtatgTATTGAATAACTGTATGTAcatgttcatttaataattctgactgtaatttaattttatctagTTTAAAGcgtaaatatgaaatattacaaaaaaaaaacatggtcaTTAAAAATATGCTACTTGTATGTGTAAATTTTGACAAAATTGtgttatgatttaaaaacaaaccattaCTGTTGATGAGGATGACAGTGATTCAAATTGAAAATGAtgtctgcaaaaataaacaataatgataatgatgataatgatgaaaatcaaaataaaataaagtgttcctAATGGTC

Function

symbol description
ppfia3 Acts upstream of or within vasculature development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA3 (PTPRF interacting protein alpha 3).

NR:

description
PREDICTED: liprin-alpha-3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235138.1 True 5988 mRNA 0.51 33 10885698 10920560

Neighbor

gene id symbol gene type direction distance location
slc1a9 slc1a9,LOC107729473,LOC107551162,LOC107680867,LOC108434930 coding downstream 19826 10847468 ~ 10865872 (-)
fgf21 LOC107561365,LOC107551145,LOC107729479,LOC107687650 coding downstream 39782 10842633 ~ 10845916 (-)
bcat2 bcat2,LOC107687634,LOC107729480,LOC107680854,LOC107561362 coding downstream 51221 10822448 ~ 10834477 (-)
grna NA coding downstream 68458 10805061 ~ 10817240 (-)
rundc1 LOC107729555,LOC107551167,LOC107687639,LOC107680882,LOC107561358 coding downstream 81866 10798013 ~ 10803832 (-)
nucb1 nucb1,LOC107687629,LOC107729549,LOC107732899,LOC107563981,LOC107680880 coding upstream 5599 10926159 ~ 10931641 (-)
ccndx si:ch211-152f23.5,LOC107687630,LOC107551158,LOC107732861,LOC107680849,LOC107563982,LOC107729433 coding upstream 11938 10932498 ~ 10935994 (-)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107680857,LOC107732891,LOC107563983 coding upstream 19644 10940204 ~ 10947278 (-)
zgc:195001 zgc:195001,LOC107732852,LOC107687625,LOC107680858,LOC107551159,LOC107729506,LOC107577587 coding upstream 34732 10955292 ~ 10964925 (-)
emc10 emc10,LOC107729566,LOC107551156,LOC107732902,LOC107563984,LOC107687623,LOC107680884 coding upstream 49605 10970165 ~ 10973445 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 116300 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 188159 10689164 ~ 10697539 (-)
LOC122334019 NA non-coding downstream 190194 10689419 ~ 10695504 (-)
G18771 NA non-coding downstream 207118 10677457 ~ 10678580 (-)
G18745 NA non-coding downstream 306558 10574167 ~ 10579140 (-)
G19108 NA non-coding upstream 413196 11333756 ~ 11335800 (-)
G19117 NA non-coding upstream 489775 11410335 ~ 11410716 (-)
G19375 NA non-coding upstream 849162 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 923454 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 946447 11867007 ~ 11871906 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 489357 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 675082 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 1422793 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 1747609 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 1878255 8992714 ~ 9007443 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 91376 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 491425 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 773712 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 792260 11712820 ~ 11728001 (-)
G19383 NA other upstream 933188 11853748 ~ 11880959 (-)

Expression


Co-expression Network