LOC122341641 (LOC107729475,LOC107687632,LOC107551163)


Basic Information

Item Value
gene id LOC122341641
gene name LOC107729475,LOC107687632,LOC107551163
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10874237 ~ 10885623 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235139.1
GCTGTTGTCCCCTCACCGCCTTTCATGAAGATACCTTACCTTACTTCAGCACTCTAACCTTCTCGGCGCGAGAATTTCggcattcactttttttttttttttttaccttcatttCGGATCAAACTTCGCTCATTTACAGCTTAAAGTCTGCCATTTGTGATCTGACTGCTGGAAAAGTAGAGTTGACGCTAATGCTCGCAGTGTCAGAGGTGTATTACTGCTCATGTTGTTCACCGCTTGCATGCCAATCCTCCAGAAACTCGCGCGTAAAGAACGACCTGAGATTAAAAGGCGCGTTTTAAACAGATAAGCGTGGAAGTACAACTCGACGTGGACCTTCTCAGACTGGACGTTGGAGATGATATGGGAGGCTTCTGCCGTTTCAACTACGTGAATCAAGAGTTCTTCTGGACATTTCGTTGATTTTGCGTGAAACTGACAGACTGTATTATCAATGTGGTTTTCGCCGAAGATACGCGTGGCCCGAGACTCACCTAAACGTTGACACGTCTTGGGAGTGATGCACTGGCTTCCCCTGGTTGCCATGGTGATCGCCTCGGCCCTGCCTTTCCCTCAAAGTCCTGTGCCCAGGCTTGTTGCCGCAATGATAGAGCCTGGcagaaacaacagcaacagcagcagcgtCCCAACAGCTAACATCAGCATGCCGACCAACTCCTCAGTGGACCACGACTCTTCTCACAACAACTACAGCACACAAGACAGAACAGAAGCTCCTCACAGAACAGACGATAAGCAGAGCACAATTGAGGAGGACCGTATATCCAAAGGTAGAGAAAATCTTCTAACAGGTAGGACTACCGGAGCAGATGCCTCCAGGCCGCATTATTCTAGGAaatacaaatcacaaaaaatagCCAGTTCCCAAAGCAACGATATTCTCAAGGACTATCAGCTTGAACCTAGTCAGTTCCATGAACAAAGCAGTATTGAGGCAGAgacttttcttaaaaatgacagGAGCGCAAGAAGTGAACTGAAAGATGGGCCTCTTGAAGGTCCGAGCTCTCCAGGGCAGGAACATCTGGATGAAGCTCAGACAAATGCAAAAGAGTTGCTGCAGCAATCTGGAGGCTTTGGGTTTGATGACATAGGCCTTCGAGAAGAAGATCAGCTGCTTTTGCTGGACGCCCATCCACGGGTGCTCTTCTCCCCAGCCCTTTCCCCACCCAAACACCCGCCACTGCTCTTAATGCTAGAGTTGGGCTTATTGGCCGATGACGTTGAGGACGAGGAAAGCCACATGATGGATGCTACCACGTCTGGTCACGGAGGCGACAAAGAAACATACAGGAACTTACTCTTGGGTCTCTCTGATTCTGACGGCCCCATTCCAGGGGTCCGGCGCAAGCGTCAGGCCGCCCACAGCGCACAGGGCATCGAACGCTCCGTCTGCGAGGCCGAAAGCGGGTGGGTGACCAACAAGAGGACGGCGGTGGACTTCCGGAGCAACACAGTCACTATTCTGCAAGAGATCCAAACCCAGACGGGACCTCTCAAGCAGTATTTCTACGAAACAAAATGTCGTAAGCCTGATCCAAATAGGAAAGGTGAAGTGCAAGCGGTGGAGGGAGCCGGCTGCTTGGGGGTGGATAAGAAACACTGGATGAGCAGGTGCGAAACCAAGCAGTCATACGTACGTGCGCTCACCTCGGATGAAACCAAGAGAATAGGGTGGAGGTGGATCCGTATTGACTCCTCCTGCGTTTGCGTGCTGCTCACTAGAGGAACGTACTACACTGAGAAGAAGTTGGAGAGGGGAAGAGAGCGAGAAGGCAGAAGGTACCGATAGCTCAGACTGTCTGAATAAAGGATTGACGCGGAGTTGAAAGATCATATGAATTAAGGAGCGTTTAAGGGAGTGTATCTGTTCTGGTCCACTGTGTGggggatattttttttccagatgttCCTGCATCTCGCTTGACAATCTCCCTGTGTCTCACTGAGGGATAGTCATAAaatcaccctcatgttgctcaaaacctgtatgatttattttttttcctgtggaacacaaatgaatacAGTGGAGTTTTTTTGGACACTAAGTCACTCTTAAAGATGTTTGAATTTCATTGCATATACTGAAAATCAAACCAATTGGCATCTGCAAACAAATATTGgagttcatttaaataacatatatgACGTTATATATGATGTTACTCAGAGTTTGACTCCCAAAAGGACTTTTTGTTCtggttttaaacaaaatttaaagATCAATAACCAAGACTAGCGTGCATgtgggattaaaaaaaaaaataacctcgttttgatattttttttaacatgcaatgcaaaaaaaaaaaagatatttttaaatgtggcttaagtgtccaaatactttatatttagtgCATTTTATACAACAAAGCCTGCTGACTTTCAAGTTGTCACGCTTCAAAAAAGTACTATTAAAATGGTCCACGGATATGAAATGCATCAAAGTCCCTTTTAAGGATAATAAGTTCACTCTGCAGCCATATTTTCAATGCCTTAAGGTGGatgttttaaaggattattTCAattccagaataaaaaaattcctGAAATTGTACTTATCCCAGTGTAACTCAAGATGTtcgtgtctttctttcttcagttgaaAAGAAATTCTTTCTTCAGTTGAAAAgatttttgaggaaaacattccaggattttCCTCCATAATGGACTTAAATGGGAATGAACGGTTTAGATTCTAAAATGCAGCTTGAAAGATCTAGTGCCGATCTCATGCATAATTTTTTACCCTACCCTACCtttttaaactaaagcacacagacaaaaaacTAACCATGTGTGTCCATTCCAATTACCTAATGCGCATTtgtggttaatttttttttttttcttagaaaaagacttttttagttttgctaGATAAGACCCTTGTTTCGTGGCAGGGATCATGATGCAAAGATCTGCCACTTCATGGCttaaaatgttttcctcaaaaaccttcatttcttttcgactgaagaaagaaagacatgaacatcttggatgacatgggggtgagtacATTATGAGGAAAATTTTATTCTTGAAGTTAACTAATCCTAAAGGTATGCAAGACCAGCTCTTACCTATGTGAACAGGAAAATAACTGgcaaattaacaattaattaatatactttaagACATGAACCGTCCCATCAATGCTGTTTTTAAGGCActataaagcatattttaaaggTTGGTCCTGATCTCACATTCATATGAAAAACAGGTTCATAGCTACCATTCGTAGCAATAAAAGTGAACTGTCTAGGGTAATAATATACAGTCTTTGGTGAAATTCCAAGTTTTCTGAAGTCATGTAAGCATGAGGTTTAAATTGAAGTCGTTCACTTGTTTTTATCTAGGTGCGTTCACTGTAACCTATTTGGCGTTTCAAGAAACAGTATACGGGTTTGAAGTGAAATGAGGTGGCGATGAGTTCCTCCGCGTACACGTCTCGCTAGGCCAGTGTGTAAACTCACACAAACAAGAAAACCTCAATACTGAgatcaattcttttttttcgtatatattgttgcatttgttttattgtatctATAGTATACAGACAATAAGTTATTACTGTTGAATTAGCACGTAAGCGTAAGTActtgatattaatatatttctgtacaATATGTGAAACATATACATCATGCAAATATGTGCGTATTTATAATAACCAAAAAGGAACCGAGCTGTATAGAGGTCAGCAGAATTTGTAATCGCAGACGAGGGCTTTCTCATAAGTGTCCTTCAAACGCCTGTCTCAAAACATGTGCCTCTTCAGATTCAGTGTCAGCTGCCATGGTTCACCCATGTACTGTTCACTCAGAAAATGTTACAGAAATACAGTCAAAATATGAAATGTCCCCGGTTACTGTATTAAGAAAGCTGTGGAAGTCAGAACACGGGGTTTGATGTCATTTTTCACATTGAGTCATTGTAATAAAGTATTATGTAATCTTTGTAAGGTAGATACTtttgtatatgattttttttttactaagtaGACGGAAGAGCAAGAGGGCCTTAtacaaagtaaaatatatgaatatgtgaTTGTAgttctatttgttttataataaaaaaaaacaggaagta

Function

NR:

description
PREDICTED: uncharacterized protein LOC107729475

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235139.1 True 4134 mRNA 0.41 2 10874237 10885623

Neighbor

gene id symbol gene type direction distance location
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding upstream 53290 10817730 ~ 10820947 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding upstream 104840 10711327 ~ 10769397 (+)
eif3d eif3d,LOC107732884,LOC107690232,LOC107680878 coding upstream 195556 10672523 ~ 10678681 (+)
sstr3 sstr3,LOC107690333,LOC107551151,LOC107680846,LOC107561344,LOC107732886 coding upstream 213153 10645904 ~ 10661084 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding upstream 235641 10626162 ~ 10638596 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding downstream 63055 10948678 ~ 10954729 (+)
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 92526 10978149 ~ 11006634 (+)
cldni LOC107729510 coding downstream 393114 11278737 ~ 11281741 (+)
prf1.9 LOC107729509,LOC107583107,LOC107658427 coding downstream 419702 11305325 ~ 11308557 (+)
prf1.1 prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016 coding downstream 423059 11308682 ~ 11313369 (+)
G18828 NA non-coding upstream 45402 10827078 ~ 10828835 (+)
G18817 NA non-coding upstream 61451 10811824 ~ 10812786 (+)
G18807 NA non-coding upstream 84571 10787355 ~ 10789666 (+)
G18794 NA non-coding upstream 171431 10702294 ~ 10702806 (+)
G18790 si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107680847,LOC107732904 non-coding upstream 172601 10700787 ~ 10701636 (+)
G18847 NA non-coding downstream 34737 10920360 ~ 10920871 (+)
G18824 NA non-coding downstream 46748 10932371 ~ 10970464 (+)
LOC122333718 NA non-coding downstream 126586 11012209 ~ 11018702 (+)
G18879 NA non-coding downstream 135705 11021328 ~ 11096418 (+)
G18894 NA non-coding downstream 191421 11077044 ~ 11078732 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 31730 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 175697 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 770776 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 1074441 9798815 ~ 9799796 (+)
G18491 NA other upstream 1124357 9739796 ~ 9749880 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 448118 11333741 ~ 11335825 (+)
G18949 NA other downstream 483270 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 887577 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 1000032 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 1141526 12027149 ~ 12049422 (+)

Expression


Co-expression Network